Sequence Description Alias PCC hrr AMTR_s00049p00227880 Protein biosynthesis.organelle translation machineries.translation elongation.EF-Tu elongation factor ATRAB8D, ATRABE1B, RABE1b, evm_27.TU.AmTr_v1.0_scaffold00049.275 0.9368746193878144 3 AMTR_s00002p00270990 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll breakdown.chlorophyllase (CLH) CLH2, ATCLH2, evm_27.TU.AmTr_v1.0_scaffold00002.603 0.9125394832321629 2 AMTR_s00048p00138890 Photosynthesis.calvin cycle.phosphoribulokinase PRK, evm_27.TU.AmTr_v1.0_scaffold00048.87 0.9119039953859602 18 AMTR_s00001p00232760 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component FTSH5, VAR1, evm_27.TU.AmTr_v1.0_scaffold00001.249 0.9111740323408802 16 AMTR_s00041p00199430 evm_27.TU.AmTr_v1.0_scaffold00041.178 0.9111257278582797 14 AMTR_s00024p00153080 Protein modification.phosphorylation.TKL kinase superfamily.G-Lectin kinase families.SD-2 kinase evm_27.TU.AmTr_v1.0_scaffold00024.107 0.9095828210892684 6 AMTR_s00012p00254790 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase evm_27.TU.AmTr_v1.0_scaffold00012.281 0.908939266932428 7 AMTR_s00049p00052690 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.GUN4 cofactor GUN4, evm_27.TU.AmTr_v1.0_scaffold00049.26 0.9079951098421227 16 AMTR_s00091p00081150 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00091.27 0.9046021847786057 22 AMTR_s00106p00108310 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component VAR2, FTSH2, evm_27.TU.AmTr_v1.0_scaffold00106.79 0.9036399222242985 36 AMTR_s00017p00136990 Cellular respiration.glycolysis.plastidial glycolysis.fructose-1,6-bisphosphate aldolase FBA2, evm_27.TU.AmTr_v1.0_scaffold00017.60 0.90263977991203 25 AMTR_s00076p00039590 Phytohormones.abscisic acid.synthesis.ABA1 zeaxanthin epoxidase ABA1, IBS3, ATABA1, ZEP, NPQ2, LOS6, ATZEP, evm_27.TU.AmTr_v1.0_scaffold00076.7 0.9020728934858403 20 AMTR_s00077p00180520 evm_27.TU.AmTr_v1.0_scaffold00077.203 0.9014179704939272 13 AMTR_s00057p00165650 evm_27.TU.AmTr_v1.0_scaffold00057.165 0.9003766809396709 14 AMTR_s00022p00205270 Phytohormones.jasmonic acid.synthesis.13-lipoxygenase ATLOX2, LOX2, evm_27.TU.AmTr_v1.0_scaffold00022.242 0.9001663799029925 19 AMTR_s00019p00244740 Protein HYPER-SENSITIVITY-RELATED 4 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.373 0.8984995507545452 16 AMTR_s00045p00209230 Protein translocation.chloroplast.outer envelope TOC translocation system.Toc90/Toc120/Toc132/Toc159 component PPI2, ATTOC159, TOC159, TOC160, TOC86, evm_27.TU.AmTr_v1.0_scaffold00045.285 0.8973839267328584 17 AMTR_s00096p00137440 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.monodehydroascorbate reductase (MDAR) ATMDAR4, MDAR4, evm_27.TU.AmTr_v1.0_scaffold00096.88 0.8973831923877362 18 AMTR_s00047p00149040 Probable acyl-activating enzyme 1, peroxisomal OS=Arabidopsis thaliana AAE1, evm_27.TU.AmTr_v1.0_scaffold00047.69 0.8959682368514138 19 AMTR_s00002p00249920 Jacalin-related lectin 3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.350 0.89537008017884 20 AMTR_s00143p00079100 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase UGT84B1, evm_27.TU.AmTr_v1.0_scaffold00143.18 0.8953526617222283 21 AMTR_s00109p00047950 Solute transport.carrier-mediated transport.TOC superfamily.TSUP transport protein evm_27.TU.AmTr_v1.0_scaffold00109.34 0.8944604446068944 22 AMTR_s00009p00233000 evm_27.TU.AmTr_v1.0_scaffold00009.187 0.8920800003789016 39 AMTR_s00099p00157080 Nutrient uptake.copper uptake.reduction-based uptake.FRO metal ion-chelate reductase ATFRO6, FRO6, evm_27.TU.AmTr_v1.0_scaffold00099.153 0.8913041997268203 24 AMTR_s00002p00100650 evm_27.TU.AmTr_v1.0_scaffold00002.59 0.8902411056089425 64 AMTR_s00071p00016000 Redox homeostasis.chloroplast redox homeostasis.M-type thioredoxin ATHM2, evm_27.TU.AmTr_v1.0_scaffold00071.5 0.8894986057360413 58 AMTR_s00149p00031690 Protein biosynthesis.organelle translation machineries.translation elongation.EF-G elongation factor ATSCO1/CPEF-G, SCO1, ATSCO1, evm_27.TU.AmTr_v1.0_scaffold00149.10 0.8885585418147316 27 AMTR_s00004p00178250 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00004.203 0.888513017764308 61 AMTR_s00001p00191590 Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00001.190 0.8885000317758126 29 AMTR_s00016p00251680 Photosynthesis.calvin cycle.glyceraldehyde 3-phosphate dehydrogenase GAPA-1, GAPA, evm_27.TU.AmTr_v1.0_scaffold00016.302 0.8883241685123879 67 AMTR_s00066p00176700 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase UGT74E2, evm_27.TU.AmTr_v1.0_scaffold00066.209 0.8880048320083544 31 AMTR_s00001p00271570 Two-component response regulator-like PRR95 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00001.492 0.8876235030010643 32 AMTR_s00019p00118960 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic55 component TIC55-II, evm_27.TU.AmTr_v1.0_scaffold00019.95 0.8860583163501566 33 AMTR_s00044p00131190 Photosynthesis.calvin cycle.glyceraldehyde 3-phosphate dehydrogenase GAPB, evm_27.TU.AmTr_v1.0_scaffold00044.119 0.8856760173904205 48 AMTR_s00062p00151050 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen CYP716A1, evm_27.TU.AmTr_v1.0_scaffold00062.139 0.8856564630559233 35 AMTR_s00001p00181860 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen CYP89A5, evm_27.TU.AmTr_v1.0_scaffold00001.175 0.8856345374424592 36 AMTR_s00005p00239290 Coenzyme metabolism.thiamine pyrophosphate synthesis.thiazole synthesis.biosynthetic protein (Thi4) TZ, THI4, THI1, evm_27.TU.AmTr_v1.0_scaffold00005.125 0.8850107596207091 37 AMTR_s00022p00242510 Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00022.352 0.8847661963957102 38 AMTR_s00001p00175920 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.geranylgeranyl pyrophosphate synthase GGR, evm_27.TU.AmTr_v1.0_scaffold00001.167 0.883955490310441 39 AMTR_s00009p00163120 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo assembly.RAF1 assembly factor evm_27.TU.AmTr_v1.0_scaffold00009.90 0.8835893604308863 40 AMTR_s00032p00222720 Molybdenum cofactor sulfurase OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00032.231 0.8802213667033538 41 AMTR_s00033p00171210 Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00033.118 0.8801581739116745 42 AMTR_s00011p00245550 Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00011.144 0.8794519781758342 43 AMTR_s00044p00107090 Cytoskeleton.cp-actin-dependent plastid movement.PMI1/PMI15 cp-actin stability factor PMI1, evm_27.TU.AmTr_v1.0_scaffold00044.78 0.878572693720614 44 AMTR_s00039p00159460 evm_27.TU.AmTr_v1.0_scaffold00039.112 0.878326633243722 45 AMTR_s00060p00116070 Nutrient uptake.nitrogen assimilation.ammonium assimilation.glutamine synthetase ATGSR1, GLN1;1, ATGLN1;1, GSR 1, evm_27.TU.AmTr_v1.0_scaffold00060.55 0.8780733461857447 72 AMTR_s00092p00098850 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor evm_27.TU.AmTr_v1.0_scaffold00092.56 0.8772530873004201 47 AMTR_s00010p00216200 Photosynthesis.calvin cycle.sedoheptulose-1,7-bisphosphatase SBPASE, evm_27.TU.AmTr_v1.0_scaffold00010.221 0.876634244862036 87 AMTR_s00058p00051650 evm_27.TU.AmTr_v1.0_scaffold00058.23 0.8758970258419225 49 AMTR_s00012p00254100 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase evm_27.TU.AmTr_v1.0_scaffold00012.273 0.8750268333501358 67 AMTR_s00001p00147850 Thioredoxin-like protein CDSP32, chloroplastic OS=Arabidopsis thaliana ATCDSP32, CDSP32, evm_27.TU.AmTr_v1.0_scaffold00001.130 0.8739197799128106 51 AMTR_s00066p00165410 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen CYP81D5, evm_27.TU.AmTr_v1.0_scaffold00066.180 0.8735524387188166 52 AMTR_s00037p00025630 Peroxidase 56 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00037.6 0.8726913205486182 53 AMTR_s00140p00105610 Photosynthesis.calvin cycle.NADPH-dependent malate dehydrogenase evm_27.TU.AmTr_v1.0_scaffold00140.51 0.8715937850264648 54 AMTR_s00135p00104240 Solute transport.carrier-mediated transport.DMT superfamily.PUP organic cation transporter PUP1, ATPUP1, evm_27.TU.AmTr_v1.0_scaffold00135.60 0.8697803782849661 55 AMTR_s00048p00229560 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group.TPT phosphometabolite transporter evm_27.TU.AmTr_v1.0_scaffold00048.224 0.869756760370142 56 AMTR_s00077p00172700 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex A.NdhN component evm_27.TU.AmTr_v1.0_scaffold00077.191 0.869101397075643 72 AMTR_s00166p00060690 RNA processing.organelle machineries.RNA editing.plastidial RNA editing.CP31 RNA editing factor ATRBP31, CP31, ATRBP33, RBP31, evm_27.TU.AmTr_v1.0_scaffold00166.36 0.8687944416607781 59 AMTR_s00059p00056420 Phytohormones.brassinosteroid.synthesis.steroid 22-alpha-hydroxylase (DWF4) DWF4, SNP2, PSC1, CLM, SAV1, CYP90B1, evm_27.TU.AmTr_v1.0_scaffold00059.35 0.8685161186277909 60 AMTR_s00037p00168570 Photosynthesis.photophosphorylation.ATP synthase complex.peripheral CF1 subcomplex.subunit gamma ATPC1, evm_27.TU.AmTr_v1.0_scaffold00037.79 0.8672562137598461 61 AMTR_s00039p00160690 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb28 protein PSB28, evm_27.TU.AmTr_v1.0_scaffold00039.114 0.8668357508693982 75 AMTR_s00003p00079190 External stimuli response.temperature.temperature sensors.PHY-B temperature sensor protein HY3, OOP1, PHYB, evm_27.TU.AmTr_v1.0_scaffold00003.45 0.866206957314166 63 AMTR_s00049p00201160 Solute transport.carrier-mediated transport.PHT2 phosphate transporter PHT2;1, ORF02, evm_27.TU.AmTr_v1.0_scaffold00049.215 0.8657744078472783 64 AMTR_s00106p00037610 Cysteine-rich repeat secretory protein 38 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00106.18 0.8655772912096166 65 AMTR_s00024p00220440 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.electron donor-binding subcomplex E.NdhU component evm_27.TU.AmTr_v1.0_scaffold00024.215 0.8652801983996283 100 AMTR_s00025p00060270 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.mTERF4 splicing factor evm_27.TU.AmTr_v1.0_scaffold00025.37 0.8644887123048092 67 AMTR_s00068p00127460 Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidopsis thaliana TIC55-IV, ACD1-LIKE, PTC52, evm_27.TU.AmTr_v1.0_scaffold00068.87 0.8635183456624809 68 AMTR_s00103p00041210 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaD PSAD-1, evm_27.TU.AmTr_v1.0_scaffold00103.18 0.8631046464044435 86 AMTR_s00110p00042430 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp100 protein CLPB3, CLPB-P, APG6, evm_27.TU.AmTr_v1.0_scaffold00110.17 0.8626644369573293 81 AMTR_s00046p00093500 Photosynthesis.photophosphorylation.ATP synthase complex.membrane CF0 subcomplex.subunit b_ evm_27.TU.AmTr_v1.0_scaffold00046.51 0.8609268311202465 73 AMTR_s00059p00076320 evm_27.TU.AmTr_v1.0_scaffold00059.51 0.8607428820761336 74 AMTR_s00046p00219150 Photosynthesis.photorespiration.serine hydroxymethyltransferase STM, SHM1, SHMT1, evm_27.TU.AmTr_v1.0_scaffold00046.151 0.8589800604268595 75 AMTR_s00009p00268340 Protein degradation.peptidase families.serine-type peptidase activities.LON protease evm_27.TU.AmTr_v1.0_scaffold00009.422 0.8560439776089055 77 AMTR_s00018p00243310 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.Mg-protoporphyrin IX O-methyltransferase CHLM, evm_27.TU.AmTr_v1.0_scaffold00018.150 0.8555443936497039 97 AMTR_s00012p00254690 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase RLK, evm_27.TU.AmTr_v1.0_scaffold00012.280 0.8552431385725399 87 AMTR_s00067p00206610 evm_27.TU.AmTr_v1.0_scaffold00067.230 0.8547789008356385 80 AMTR_s00165p00028990 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase evm_27.TU.AmTr_v1.0_scaffold00165.13 0.8545371624047866 81 AMTR_s00012p00255610 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase evm_27.TU.AmTr_v1.0_scaffold00012.291 0.8544968326994399 82 AMTR_s00009p00267810 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.assembly phase.SUF-D component NAP6, ATNAP6, evm_27.TU.AmTr_v1.0_scaffold00009.411 0.8530388091962917 84 AMTR_s00095p00031150 Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00095.12 0.8529665789164421 85 AMTR_s00066p00204180 RNA biosynthesis.transcriptional activation.C2C2 superfamily.BBX/DBB transcription factor STO, evm_27.TU.AmTr_v1.0_scaffold00066.276 0.8525251871861287 86 AMTR_s00024p00238750 evm_27.TU.AmTr_v1.0_scaffold00024.272 0.8517645118255712 87 AMTR_s00126p00110160 RNA processing.organelle machineries.RNA splicing.mitochondrial RNA splicing.group-II intron splicing.PMH RNA helicase PMH2, ATRH53, evm_27.TU.AmTr_v1.0_scaffold00126.53 0.8505659878164533 95 AMTR_s00078p00065110 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo assembly.BSD2 assembly factor evm_27.TU.AmTr_v1.0_scaffold00078.37 0.8489577605264603 90 AMTR_s00043p00100060 Protein modification.phosphorylation.TKL kinase superfamily.G-Lectin kinase families.SD-1 kinase CRK25, evm_27.TU.AmTr_v1.0_scaffold00043.14 0.8483271977852157 91 AMTR_s00009p00233140 evm_27.TU.AmTr_v1.0_scaffold00009.188 0.8482536512226565 92 AMTR_s00101p00116640 Cytochrome P450 94B3 OS=Arabidopsis thaliana CYP94D2, evm_27.TU.AmTr_v1.0_scaffold00101.90 0.847794113931788 93 AMTR_s00149p00080400 Amino acid metabolism.degradation.branched-chain amino acid.enoyl-CoA hydratase CHY1, evm_27.TU.AmTr_v1.0_scaffold00149.64 0.8477378291326231 94 AMTR_s00089p00043950 RNA biosynthesis.transcriptional activation.bHLH transcription factor FMA, evm_27.TU.AmTr_v1.0_scaffold00089.12 0.8474214080331002 95 AMTR_s00115p00066030 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor CRR41 evm_27.TU.AmTr_v1.0_scaffold00115.4 0.846728272262463 96 AMTR_s00046p00173940 Cell wall.pectin.xylogalacturonan.synthesis.xylogalacturonan xylosyltransferase evm_27.TU.AmTr_v1.0_scaffold00046.97 0.8466691904944494 97