Sequence Description Alias PCC hrr AMTR_s00148p00040560 evm_27.TU.AmTr_v1.0_scaffold00148.20 0.9639626883006992 1 AMTR_s00046p00089870 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).PRPF8/SUS2 protein component EMB33, SUS2, EMB177, EMB14, evm_27.TU.AmTr_v1.0_scaffold00046.46 0.9630196338150668 2 AMTR_s00022p00114710 RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Brr2 RNA helicase emb1507, evm_27.TU.AmTr_v1.0_scaffold00022.105 0.9481067548763513 3 AMTR_s00040p00210200 RNA processing.RNA 3-end polyadenylation.Cleavage Factor II (CF-IIm) complex.Pcf11 component evm_27.TU.AmTr_v1.0_scaffold00040.222 0.9431384682594647 4 AMTR_s00122p00094620 RNA biosynthesis.transcriptional repression.LUG transcriptional co-repressor LUG, RON2, evm_27.TU.AmTr_v1.0_scaffold00122.38 0.938557383573975 11 AMTR_s00010p00207960 Nitrate regulatory gene2 protein OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00010.201 0.9356490622716914 6 AMTR_s00068p00181410 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic subunits.subunit 2 EMB1989, RPB2, NRPB2, evm_27.TU.AmTr_v1.0_scaffold00068.139 0.933868356101389 12 AMTR_s00003p00122400 Lipid metabolism.lipid degradation.fatty acid degradation.alternative beta-oxidation.monofunctionial hydroxyacyl-CoA dehydrogenase IBR3, evm_27.TU.AmTr_v1.0_scaffold00003.89 0.9328480040576468 14 AMTR_s00067p00089960 COP1-interacting protein 7 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00067.66 0.9317508922124151 9 AMTR_s00010p00226160 evm_27.TU.AmTr_v1.0_scaffold00010.253 0.9297230741467808 10 AMTR_s00025p00181800 Pumilio homolog 5 OS=Arabidopsis thaliana PUM5, APUM5, evm_27.TU.AmTr_v1.0_scaffold00025.219 0.9288678523399251 11 AMTR_s00002p00269880 Nutrient uptake.sulfur assimilation.sulfate assimilation.sulfite reductase SIR, evm_27.TU.AmTr_v1.0_scaffold00002.562 0.928367336170504 12 AMTR_s00182p00016710 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.AOD group histone demethylase activities.LDL3 lysine-specific demethylase LDL3, evm_27.TU.AmTr_v1.0_scaffold00182.5 0.927368195885678 13 AMTR_s00003p00020850 Mitochondrial Rho GTPase 1 OS=Arabidopsis thaliana MIRO1, emb2473, evm_27.TU.AmTr_v1.0_scaffold00003.6 0.926958675895565 26 AMTR_s00061p00204480 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.HECT E3 monomeric ligase UPL1 0.9263286679094722 15 AMTR_s00024p00250820 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA decapping complex.DCP5 regulatory component DCP5, evm_27.TU.AmTr_v1.0_scaffold00024.336 0.9262271423033209 16 AMTR_s00016p00255950 RNA biosynthesis.transcriptional activation.MYB superfamily.MYB-related transcription factor evm_27.TU.AmTr_v1.0_scaffold00016.338 0.9247611393848981 17 AMTR_s00019p00148170 Vesicle trafficking.Coat protein II (COPII) coatomer machinery.Sec16 Sar1-GTPase-regulating protein evm_27.TU.AmTr_v1.0_scaffold00019.136 0.9246530320321704 22 AMTR_s00045p00076020 RNA biosynthesis.transcriptional activation.SBP transcription factor SPL1, evm_27.TU.AmTr_v1.0_scaffold00045.66 0.9244310974050473 30 AMTR_s00086p00132870 evm_27.TU.AmTr_v1.0_scaffold00086.75 0.9236729851902338 20 AMTR_s00060p00130340 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).inner ring.NUP155 scaffold nucleoporin NUP155, evm_27.TU.AmTr_v1.0_scaffold00060.71 0.9229894848556315 21 AMTR_s00004p00128400 Phytohormones.abscisic acid.synthesis.abscisic aldehyde oxidase ATAO, AT-AO1, AtAO1, AO1, AAO1, AOalpha, evm_27.TU.AmTr_v1.0_scaffold00004.118 0.9225610221990346 22 AMTR_s00077p00105110 DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00077.90 0.9220093596337714 23 AMTR_s00080p00131040 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase HERK1, evm_27.TU.AmTr_v1.0_scaffold00080.56 0.9218612125268468 24 AMTR_s00004p00093740 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT3/5 component evm_27.TU.AmTr_v1.0_scaffold00004.76 0.9214922292417094 42 AMTR_s00071p00142490 RNA processing.RNA decay.Nonsense-Mediated mRNA Decay (NMD).UPF1 effector protein UPF1, ATUPF1, LBA1, evm_27.TU.AmTr_v1.0_scaffold00071.128 0.9214259694589015 26 AMTR_s00028p00193460 Phytohormones.cytokinin.perception and signal transduction.AHK-type receptor AHK2, HK2, evm_27.TU.AmTr_v1.0_scaffold00028.85 0.9202965471771449 34 AMTR_s00065p00174980 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin establishment.PDS5 cohesin cofactor evm_27.TU.AmTr_v1.0_scaffold00065.145 0.9202706749444044 29 AMTR_s00009p00260060 Solute transport.carrier-mediated transport.CPA superfamily.CPA-2 family.proton:potassium cation antiporter (KEA-type) ATKEA2, KEA2, evm_27.TU.AmTr_v1.0_scaffold00009.318 0.9195784667848184 29 AMTR_s00023p00208940 RNA biosynthesis.transcriptional activation.WRKY transcription factor WRKY4, evm_27.TU.AmTr_v1.0_scaffold00023.152 0.9181544802508211 30 AMTR_s00069p00056230 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-HCa-type E3 ligase XBAT33, evm_27.TU.AmTr_v1.0_scaffold00069.34 0.9176688597214461 31 AMTR_s00013p00152000 DnaJ homolog subfamily C GRV2 OS=Arabidopsis thaliana GRV2, KAM2, evm_27.TU.AmTr_v1.0_scaffold00013.78 0.9176676152872043 32 AMTR_s00078p00190750 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp70 family.Hsp110 protein HSP91, evm_27.TU.AmTr_v1.0_scaffold00078.198 0.9164402635387544 33 AMTR_s00198p00028070 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.kinase module.MED13 component GCT, evm_27.TU.AmTr_v1.0_scaffold00198.5 0.9160161444955617 34 AMTR_s00041p00141370 evm_27.TU.AmTr_v1.0_scaffold00041.101 0.9151273378839999 81 AMTR_s00060p00196600 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.tail module.MED23 component evm_27.TU.AmTr_v1.0_scaffold00060.141 0.9142686700400258 92 AMTR_s00682p00010920 Chromatin organisation.histone chaperone activities.FACT histone chaperone complex.SPT16 component SPT16, evm_27.TU.AmTr_v1.0_scaffold00682.1 0.9140192013230232 37 AMTR_s00029p00151870 evm_27.TU.AmTr_v1.0_scaffold00029.180 0.9129512267199589 38 AMTR_s00069p00127620 evm_27.TU.AmTr_v1.0_scaffold00069.88 0.9124263663070441 39 AMTR_s00092p00098010 ATILP1, ILP1, evm_27.TU.AmTr_v1.0_scaffold00092.55 0.9119746582287942 40 AMTR_s00071p00125410 RNA processing.organelle machineries.RNA editing.MORF-type RNA editing factor evm_27.TU.AmTr_v1.0_scaffold00071.102 0.911948797069845 41 AMTR_s00138p00044110 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.THO subcomplex.THOC2/Tho2 component THO2, AtTHO2, evm_27.TU.AmTr_v1.0_scaffold00138.19 0.9106168996123013 97 AMTR_s00057p00189360 Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00057.205 0.9101322326379352 43 AMTR_s00077p00182530 COP1-interacting protein 7 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00077.207 0.9097766593488171 44 AMTR_s00105p00057070 Solute transport.primary active transport.ABC superfamily.ABC2 family.subfamily ABCG transporter evm_27.TU.AmTr_v1.0_scaffold00105.25 0.9097338275694806 45 AMTR_s00025p00184490 evm_27.TU.AmTr_v1.0_scaffold00025.223 0.9096859868137636 46 AMTR_s00147p00036340 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease DegP7, evm_27.TU.AmTr_v1.0_scaffold00147.15 0.9095767731742316 61 AMTR_s00209p00023450 Protein biosynthesis.aminoacyl-tRNA synthetase activities.methionine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00209.4 0.9090349869865068 48 AMTR_s00069p00133460 Suppressor of mec-8 and unc-52 protein homolog 1 OS=Arabidopsis thaliana SMU1, evm_27.TU.AmTr_v1.0_scaffold00069.97 0.9089557419901017 57 AMTR_s00048p00066880 Probable E3 ubiquitin-protein ligase ARI3 OS=Arabidopsis thaliana NHL8, evm_27.TU.AmTr_v1.0_scaffold00048.27 0.9087465205715299 50 AMTR_s00001p00229100 RNA processing.RNA 3-end polyadenylation.Cleavage Stimulatory Factor (CstF) complex.CstF64/Rna15 component CSTF64, evm_27.TU.AmTr_v1.0_scaffold00001.240 0.9083184807238679 51 AMTR_s00099p00149450 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.S-methylmethionine cycle.methionine S-methyltransferase MMT, evm_27.TU.AmTr_v1.0_scaffold00099.136 0.9075930217320771 53 AMTR_s00040p00181990 Neutral/alkaline invertase 3, chloroplastic OS=Oryza sativa subsp. japonica INV-E, At-A/N-InvE, evm_27.TU.AmTr_v1.0_scaffold00040.175 0.9071292373058645 54 AMTR_s00080p00141940 tRNA ligase 1 OS=Arabidopsis thaliana ATRNL, AtRLG1, RNL, evm_27.TU.AmTr_v1.0_scaffold00080.64 0.9063976392919498 56 AMTR_s00003p00212560 emb1441, evm_27.TU.AmTr_v1.0_scaffold00003.204 0.9060124807252757 72 AMTR_s00062p00149800 evm_27.TU.AmTr_v1.0_scaffold00062.138 0.9058667314161816 58 AMTR_s00024p00216120 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UTP7 assembly factor evm_27.TU.AmTr_v1.0_scaffold00024.201 0.9057972620503638 63 AMTR_s00022p00070510 Protein modification.peptide maturation.plastid.SPP stromal processing peptidase evm_27.TU.AmTr_v1.0_scaffold00022.51 0.9051842673790705 61 AMTR_s00057p00042800 RNA biosynthesis.transcriptional activation.CAMTA transcription factor evm_27.TU.AmTr_v1.0_scaffold00057.23 0.904893334644988 63 AMTR_s00062p00040090 RNA biosynthesis.RNA polymerase II-dependent transcription.miRNA biogenesis.DAWDLE pri-miRNA-DCL1 association factor DDL, evm_27.TU.AmTr_v1.0_scaffold00062.21 0.9045643702507035 66 AMTR_s00142p00090900 emb2410, evm_27.TU.AmTr_v1.0_scaffold00142.59 0.9044066387013648 67 AMTR_s00071p00186380 Protein modification.phosphorylation.CMGC kinase superfamily.GSK kinase ATSK42, SK42, evm_27.TU.AmTr_v1.0_scaffold00071.195 0.9044032130216408 68 AMTR_s00024p00121650 Protein modification.phosphorylation.CMGC kinase superfamily.DYRK kinase evm_27.TU.AmTr_v1.0_scaffold00024.71 0.9043026076257894 92 AMTR_s00068p00188520 MACPF domain-containing protein NSL1 OS=Arabidopsis thaliana NSL1, evm_27.TU.AmTr_v1.0_scaffold00068.151 0.9040206813531867 70 AMTR_s00002p00145340 Cellular respiration.tricarboxylic acid cycle.mitochondrial NAD-dependent malic enzyme NAD-ME1, evm_27.TU.AmTr_v1.0_scaffold00002.109 0.9036680358145758 91 AMTR_s00019p00246290 Nucleotide metabolism.purines.ribonucleotide (RN) anabolism.formylglycinamidine RN synthase PUR4, evm_27.TU.AmTr_v1.0_scaffold00019.386 0.9035567699803279 72 AMTR_s00078p00187540 Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana EMB2745, evm_27.TU.AmTr_v1.0_scaffold00078.193 0.9035304962197502 73 AMTR_s00002p00270710 Phytohormones.ethylene.synthesis.ETO-type regulator protein EOL1, evm_27.TU.AmTr_v1.0_scaffold00002.595 0.9034651152335604 74 AMTR_s00059p00138250 Vesicle trafficking.autophagosome formation.ATG8/ATG12 conjugation system.ATG7 ATG8/12-activating E1 protein ATAPG7, APG7, ATG7, ATATG7, evm_27.TU.AmTr_v1.0_scaffold00059.120 0.9034544341447002 79 AMTR_s00053p00219090 Protein degradation.peptide tagging.Small-Ubiquitin-like-Modifier (SUMO)-anchor modification (sumoylation).SUMO chain-forming-ligase E4 enzyme (PIAL) evm_27.TU.AmTr_v1.0_scaffold00053.172 0.9032150347686969 76 AMTR_s00060p00033670 Multi-process regulation.TOR signalling pathway.TORC complex.TOR kinase component TOR, evm_27.TU.AmTr_v1.0_scaffold00060.9 0.902992419625971 77 AMTR_s00004p00159650 Replication factor C subunit 1 OS=Oryza sativa subsp. japonica RFC1, AtRFC1, evm_27.TU.AmTr_v1.0_scaffold00004.171 0.9019327822121712 78 AMTR_s00006p00242820 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN1 regulatory component RPN1A, ATRPN1A, evm_27.TU.AmTr_v1.0_scaffold00006.121 0.9017795891768077 89 AMTR_s00007p00263470 COP1-interacting protein 7 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00007.340 0.9013334882303287 80 AMTR_s00012p00234420 RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.CRN/MAC10 component evm_27.TU.AmTr_v1.0_scaffold00012.192 0.9005972141418441 98 AMTR_s00003p00269470 evm_27.TU.AmTr_v1.0_scaffold00003.408 0.898702507954501 84 AMTR_s00019p00231450 Protein degradation.peptide tagging.Related-to-Ubiquitin (RUB/NEDD8)-anchor modification (neddylation).RUB deconjugation of neddylated cullin.COP9 signalosome complex.CSN5 component CSN5B, CSN5, AJH2, evm_27.TU.AmTr_v1.0_scaffold00019.317 0.8982405044042362 86 AMTR_s00021p00207790 evm_27.TU.AmTr_v1.0_scaffold00021.180 0.8977634294664791 87 AMTR_s00041p00123630 RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.UPF2 component evm_27.TU.AmTr_v1.0_scaffold00041.92 0.8972804686156992 90 AMTR_s00062p00113470 DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00062.93 0.8969610526812193 91 AMTR_s00033p00059780 Protein modification.lipidation.Cys-linked S-acylation.protein S-acyltransferase TIP1, evm_27.TU.AmTr_v1.0_scaffold00033.26 0.8966799370459956 92 AMTR_s00101p00092980 ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana FAS4, ATFAS4, evm_27.TU.AmTr_v1.0_scaffold00101.70 0.8965073870114164 93 AMTR_s00111p00143180 Vesicle trafficking.Coat protein II (COPII) coatomer machinery.coat protein complex.Sec31 scaffolding component evm_27.TU.AmTr_v1.0_scaffold00111.123 0.8965073608760067 94 AMTR_s00046p00223780 Protein degradation.peptidase families.metallopeptidase activities.M3 protease evm_27.TU.AmTr_v1.0_scaffold00046.160 0.8962782234559541 96 AMTR_s00025p00127670 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-HCa-type E3 ligase DAL1, evm_27.TU.AmTr_v1.0_scaffold00025.120 0.895838299568241 97 AMTR_s00013p00226690 Nucleotide metabolism.pyrimidines.ribonucleotide anabolism.carbamoyl phosphate synthetase dimer.large subunit CARB, evm_27.TU.AmTr_v1.0_scaffold00013.174 0.8953279743139518 98 AMTR_s00021p00078920 Protein modification.phosphorylation.SCY1 kinase evm_27.TU.AmTr_v1.0_scaffold00021.35 0.8952316941517847 99