Sequence Description Alias PCC hrr AMTR_s00008p00202090 RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00008.120 0.9391130317830624 3 AMTR_s00075p00091010 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.uroporphyrinogen III decarboxylase HEME1, evm_27.TU.AmTr_v1.0_scaffold00075.28 0.9371095255642666 7 AMTR_s00003p00257280 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00003.320 0.9275697232375479 15 AMTR_s00038p00234220 Haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00038.234 0.9273165509302808 4 AMTR_s00007p00156370 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.chlorophyll synthase ChlG CHLG, G4, ATG4, evm_27.TU.AmTr_v1.0_scaffold00007.117 0.9271676906073477 7 AMTR_s00010p00259870 evm_27.TU.AmTr_v1.0_scaffold00010.430 0.9219722352437305 18 AMTR_s00048p00223180 Protein biosynthesis.aminoacyl-tRNA synthetase activities.serine-tRNA ligase ATSRS, OVA7, SRS, evm_27.TU.AmTr_v1.0_scaffold00048.210 0.9193959154136714 15 AMTR_s00216p00022320 Coenzyme metabolism.phylloquinone synthesis.1,4-dihydroxy-2-naphtoate-phytyltransferase ABC4, evm_27.TU.AmTr_v1.0_scaffold00216.3 0.9175363346228681 9 AMTR_s00022p00249930 emb2738, evm_27.TU.AmTr_v1.0_scaffold00022.381 0.9156559044374014 32 AMTR_s00058p00167600 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst ATCYP38, CYP38, evm_27.TU.AmTr_v1.0_scaffold00058.152 0.9146102217179265 16 AMTR_s00044p00116170 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00044.90 0.9143017955231956 11 AMTR_s00136p00085920 Pentatricopeptide repeat-containing protein At1g10910, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00136.44 0.9138489839801675 39 AMTR_s00001p00220750 evm_27.TU.AmTr_v1.0_scaffold00001.229 0.9128090864799754 60 AMTR_s00013p00209880 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL18 component evm_27.TU.AmTr_v1.0_scaffold00013.145 0.9124544378000513 14 AMTR_s00120p00054610 evm_27.TU.AmTr_v1.0_scaffold00120.17 0.911261071142395 15 AMTR_s00006p00260480 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp60 family.Hsp60 protein evm_27.TU.AmTr_v1.0_scaffold00006.222 0.9099161401285342 22 AMTR_s00012p00077460 Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum evm_27.TU.AmTr_v1.0_scaffold00012.34 0.9095440403884117 17 AMTR_s00023p00232870 Pentatricopeptide repeat-containing protein At5g02830, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00023.190 0.9094249095918565 22 AMTR_s00133p00054340 PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00133.19 0.9084003879971118 19 AMTR_s00010p00141760 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.dehydroascorbate reductase (DHAR) DHAR3, evm_27.TU.AmTr_v1.0_scaffold00010.104 0.9073807100810886 20 AMTR_s00031p00061040 Uncharacterized protein At5g03900, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00031.26 0.9070710746283592 23 AMTR_s00101p00041820 evm_27.TU.AmTr_v1.0_scaffold00101.13 0.9062736936023598 24 AMTR_s00058p00093170 evm_27.TU.AmTr_v1.0_scaffold00058.50 0.9031398327936168 35 AMTR_s00081p00136350 Protein biosynthesis.organelle translation machineries.peptide deformylation.PDF formylmethionine deformylase ATDEF1, PDF1A, evm_27.TU.AmTr_v1.0_scaffold00081.52 0.9027722497440168 51 AMTR_s00061p00142700 RNA processing.organelle machineries.RNA editing.plastidial RNA editing.CP31 RNA editing factor ATRBP31, CP31, ATRBP33, RBP31, evm_27.TU.AmTr_v1.0_scaffold00061.123 0.902655023432334 25 AMTR_s00021p00119000 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL34 component evm_27.TU.AmTr_v1.0_scaffold00021.66 0.9025643811845407 26 AMTR_s00145p00079180 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.lumen subcomplex L.PnsL1 component PPL2, evm_27.TU.AmTr_v1.0_scaffold00145.28 0.9015750431391262 27 AMTR_s00001p00253330 evm_27.TU.AmTr_v1.0_scaffold00001.328 0.9007150292612437 65 AMTR_s00050p00032750 evm_27.TU.AmTr_v1.0_scaffold00050.4 0.9005848325360455 29 AMTR_s00078p00106750 Phytohormones.salicylic acid.synthesis.isochorismate synthase ICS2, ATICS2, evm_27.TU.AmTr_v1.0_scaffold00078.78 0.8977166401274129 30 AMTR_s00013p00233820 evm_27.TU.AmTr_v1.0_scaffold00013.185 0.8962288077565014 31 AMTR_s00029p00083110 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF136 protein HCF136, evm_27.TU.AmTr_v1.0_scaffold00029.76 0.8956262602305974 32 AMTR_s00046p00014960 Rhodanese-like domain-containing protein 9, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00046.2 0.8952124374917119 48 AMTR_s00046p00228230 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL13 component emb1473, evm_27.TU.AmTr_v1.0_scaffold00046.169 0.8937708727281707 87 AMTR_s00049p00169350 Protein STICHEL-like 2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00049.158 0.8936631416699827 39 AMTR_s00099p00159350 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll breakdown.chlorophyll dephytylase (CLD) evm_27.TU.AmTr_v1.0_scaffold00099.158 0.8926461202949301 48 AMTR_s00071p00199450 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCD transporter evm_27.TU.AmTr_v1.0_scaffold00071.217 0.8923907254819845 93 AMTR_s00165p00016900 evm_27.TU.AmTr_v1.0_scaffold00165.3 0.8907323710781585 39 AMTR_s00016p00219550 evm_27.TU.AmTr_v1.0_scaffold00016.199 0.8906864818408846 40 AMTR_s00099p00160640 evm_27.TU.AmTr_v1.0_scaffold00099.161 0.8905768278108406 41 AMTR_s00045p00150380 Ferredoxin C 2, chloroplastic OS=Arabidopsis thaliana FdC1, evm_27.TU.AmTr_v1.0_scaffold00045.162 0.8901093774179161 42 AMTR_s00009p00265580 DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00009.383 0.8893387859263281 63 AMTR_s00043p00168880 BTB/POZ domain-containing protein At3g22104 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00043.37 0.8884593337997191 44 AMTR_s00025p00248100 Probable transmembrane GTPase FZO-like, chloroplastic OS=Arabidopsis thaliana FZL, evm_27.TU.AmTr_v1.0_scaffold00025.402 0.8880775254974166 45 AMTR_s00041p00009900 evm_27.TU.AmTr_v1.0_scaffold00041.2 0.8878495625178077 77 AMTR_s00029p00114850 evm_27.TU.AmTr_v1.0_scaffold00029.125 0.8877898664464492 84 AMTR_s00007p00031450 evm_27.TU.AmTr_v1.0_scaffold00007.11 0.8865944502299141 71 AMTR_s00071p00184210 Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00071.189 0.8864685657172412 49 AMTR_s00045p00205250 Protein biosynthesis.aminoacyl-tRNA synthetase activities.isoleucine-tRNA ligase OVA2, evm_27.TU.AmTr_v1.0_scaffold00045.272 0.8862512233717185 93 AMTR_s00010p00055110 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psPSRP3 component evm_27.TU.AmTr_v1.0_scaffold00010.27 0.8837346952061235 71 AMTR_s00106p00046740 Protein biosynthesis.aminoacyl-tRNA synthetase activities.leucine-tRNA ligase EMB2369, evm_27.TU.AmTr_v1.0_scaffold00106.25 0.8830364463660024 94 AMTR_s00003p00270950 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor CRR9 evm_27.TU.AmTr_v1.0_scaffold00003.446 0.8828941366713363 59 AMTR_s00005p00266220 evm_27.TU.AmTr_v1.0_scaffold00005.229 0.8818907039528482 55 AMTR_s00057p00193080 Protein biosynthesis.organelle translation machineries.translation termination.PrfA-type peptide chain release factor APG3, evm_27.TU.AmTr_v1.0_scaffold00057.217 0.8816281366214109 99 AMTR_s00052p00157970 evm_27.TU.AmTr_v1.0_scaffold00052.66 0.8803048512598288 80 AMTR_s00002p00128010 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP9/FSD2 component FSD2, evm_27.TU.AmTr_v1.0_scaffold00002.85 0.8795236708785058 58 AMTR_s00171p00047960 evm_27.TU.AmTr_v1.0_scaffold00171.29 0.8785215356395893 60 AMTR_s00089p00093330 Protein biosynthesis.aminoacyl-tRNA synthetase activities.lysine-tRNA ligase OVA5, ATKRS-2, evm_27.TU.AmTr_v1.0_scaffold00089.48 0.8770051642188006 89 AMTR_s00095p00128730 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.Mg-protoporphyrin IX monomethylester cyclase complex.CRD1 catalytic component ACSF, CHL27, CRD1, evm_27.TU.AmTr_v1.0_scaffold00095.88 0.8760410221724854 98 AMTR_s00077p00156540 Serotonin N-acetyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica ATNSI, NSI, evm_27.TU.AmTr_v1.0_scaffold00077.160 0.8755179093486727 63 AMTR_s00024p00252900 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.MPH2 acclimation factor evm_27.TU.AmTr_v1.0_scaffold00024.352 0.8748468419884838 66 AMTR_s00148p00069790 Protein modification.phosphorylation.TKL kinase superfamily.RLCK-VIII kinase families.RLCK-VIII-sis kinase NCRK, evm_27.TU.AmTr_v1.0_scaffold00148.43 0.8745659772767393 80 AMTR_s00117p00058770 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.xanthophyll synthesis.VDE violaxanthin de-epoxidase NPQ1, AVDE1, evm_27.TU.AmTr_v1.0_scaffold00117.15 0.8719585246542556 88 AMTR_s00006p00258450 Coenzyme metabolism.phylloquinone synthesis.multifunctional phylloquinone synthesis protein (PHYLLO) evm_27.TU.AmTr_v1.0_scaffold00006.206 0.8717425013931753 85 AMTR_s00010p00259680 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease DEGP8, DEG8, evm_27.TU.AmTr_v1.0_scaffold00010.427 0.8710519065158483 76 AMTR_s00051p00066360 Cell cycle.regulation.cyclins.CYL1-type cyclin evm_27.TU.AmTr_v1.0_scaffold00051.24 0.870704752696909 77 AMTR_s00005p00062400 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.PRDA1 FSD2-interacting factor evm_27.TU.AmTr_v1.0_scaffold00005.9 0.8702735795695378 79 AMTR_s00059p00166490 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic62 component evm_27.TU.AmTr_v1.0_scaffold00059.157 0.8682323367919806 97 AMTR_s00039p00213540 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psPSRP5 component PSRP5, evm_27.TU.AmTr_v1.0_scaffold00039.184 0.8674463870365493 83 AMTR_s00145p00071320 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.PPL1 protein PPL1, evm_27.TU.AmTr_v1.0_scaffold00145.26 0.8673807201738389 85 AMTR_s00012p00251230 evm_27.TU.AmTr_v1.0_scaffold00012.252 0.8670991923555526 86 AMTR_s00024p00162030 Protein trichome birefringence OS=Arabidopsis thaliana TBR 0.865763129833657 88 AMTR_s00109p00054230 Cell wall.cellulose.synthesis.cellulose synthase complex (CSC).CSC components.CC-type microtubule-interacting component evm_27.TU.AmTr_v1.0_scaffold00109.39 0.8653564939264821 89 AMTR_s00135p00077620 evm_27.TU.AmTr_v1.0_scaffold00135.39 0.8643388515323943 91 AMTR_s00021p00220150 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS6 component evm_27.TU.AmTr_v1.0_scaffold00021.206 0.8643333299167877 92 AMTR_s00052p00167110 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.LCY-e lycopene epsilon cyclase LUT2, evm_27.TU.AmTr_v1.0_scaffold00052.77 0.8640243187141077 94 AMTR_s00048p00192820 ENH1, evm_27.TU.AmTr_v1.0_scaffold00048.152 0.8636056905522921 96 AMTR_s00077p00042300 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group evm_27.TU.AmTr_v1.0_scaffold00077.24 0.8626407787941691 100