Sequence Description Alias PCC hrr AMTR_s00047p00213160 RNA processing.organelle machineries.RNA splicing.mitochondrial RNA splicing.group-II intron splicing.nMAT1/2 type-I splicing factor evm_27.TU.AmTr_v1.0_scaffold00047.154 0.9662098181902963 3 AMTR_s00148p00070910 Putative pentatricopeptide repeat-containing protein At1g13630 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00148.45 0.9590300062097155 7 AMTR_s00045p00062170 RNA processing.RNA modification.rRNA/tRNA methylation.TRM13 tRNA adenosine-methyltransferase evm_27.TU.AmTr_v1.0_scaffold00045.45 0.9426551356061729 17 AMTR_s00032p00190520 Protein degradation.ER-associated protein degradation (ERAD) machinery.PNG1 peptide:N-glycanase AtPNG1, PNG1, evm_27.TU.AmTr_v1.0_scaffold00032.172 0.9367705752695025 13 AMTR_s00001p00273020 External stimuli response.biotic stress.pathogen effector.NLR effector receptor evm_27.TU.AmTr_v1.0_scaffold00001.586 0.9358800124665321 55 AMTR_s00066p00131520 Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.125 0.9325926244220285 39 AMTR_s00095p00091200 Calmodulin-interacting protein 111 OS=Arabidopsis thaliana CIP111, evm_27.TU.AmTr_v1.0_scaffold00095.52 0.9313391977946124 35 AMTR_s00022p00212920 DNA topoisomerase 6 subunit B OS=Oryza sativa subsp. indica TOP6B, BIN3, HYP6, RHL3, ATTOP6B, evm_27.TU.AmTr_v1.0_scaffold00022.251 0.9296272122524589 73 AMTR_s00039p00125380 Cell cycle.organelle machineries.DNA replication.genome stability maintenance.MSH1 factor CHM, MSH1, ATMSH1, CHM1, evm_27.TU.AmTr_v1.0_scaffold00039.79 0.9292815496229831 73 AMTR_s00049p00181700 Vesicle trafficking.target membrane tethering.Exocyst complex.SEC6 component SEC6, evm_27.TU.AmTr_v1.0_scaffold00049.176 0.9264326173105424 24 AMTR_s00003p00270420 0.9242201529481221 25 AMTR_s00008p00266190 evm_27.TU.AmTr_v1.0_scaffold00008.227 0.9233427605892517 29 AMTR_s00197p00038370 evm_27.TU.AmTr_v1.0_scaffold00197.18 0.9192466095107508 87 AMTR_s00078p00067180 Pentatricopeptide repeat-containing protein At2g46050, mitochondrial OS=Arabidopsis thaliana EMB2261, evm_27.TU.AmTr_v1.0_scaffold00078.40 0.917164231631384 54 AMTR_s00030p00126060 Cell cycle.interphase.DNA replication.preinitiation.TSK chromatin stabilizing factor TSK, BRU1, MGO3, evm_27.TU.AmTr_v1.0_scaffold00030.75 0.9164310336539686 33 AMTR_s00067p00206040 evm_27.TU.AmTr_v1.0_scaffold00067.228 0.9163666725210243 25 AMTR_s00066p00157030 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor evm_27.TU.AmTr_v1.0_scaffold00066.162 0.9153526609167683 39 AMTR_s00008p00203110 Protein argonaute 4A OS=Oryza sativa subsp. japonica AGO4, OCP11, evm_27.TU.AmTr_v1.0_scaffold00008.122 0.9142828032424288 62 AMTR_s00002p00268800 evm_27.TU.AmTr_v1.0_scaffold00002.541 0.912537984338296 65 AMTR_s00025p00131930 evm_27.TU.AmTr_v1.0_scaffold00025.131 0.9102130884219141 91 AMTR_s00045p00091940 Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00045.85 0.9089912005111433 55 AMTR_s00109p00079620 RNA processing.ribonuclease activities.RNase P ribonuclease activities.protein-only RNase P PRORP1, evm_27.TU.AmTr_v1.0_scaffold00109.62 0.9088748280169886 45 AMTR_s00008p00203230 Protein argonaute 16 OS=Oryza sativa subsp. japonica AGO6, evm_27.TU.AmTr_v1.0_scaffold00008.123 0.9079575597254376 67 AMTR_s00012p00239180 RNA biosynthesis.transcriptional activation.MYB superfamily.MYB-related transcription factor TRP2, ATTRP2, TRFL1, evm_27.TU.AmTr_v1.0_scaffold00012.208 0.9073360944658788 33 AMTR_s00079p00185530 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.CRS1 splicing factor ATCRS1, CRS1, evm_27.TU.AmTr_v1.0_scaffold00079.106 0.9067730413376872 34 AMTR_s00095p00033450 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.ITS2 rRNA removal.LAS1 pre-rRNA cleavage factor evm_27.TU.AmTr_v1.0_scaffold00095.14 0.9066033520762212 76 AMTR_s00092p00143460 evm_27.TU.AmTr_v1.0_scaffold00092.112 0.9065213243171463 42 AMTR_s00003p00270010 Cellular respiration.oxidative phosphorylation.alternative NAD(P)H dehydrogenase activities.type-II NAD(P)H dehydrogenase activities.NDB-type NAD(P)H dehydrogenase NDB3, evm_27.TU.AmTr_v1.0_scaffold00003.424 0.906440127096439 81 AMTR_s00016p00231800 Protein modification.phosphorylation.TKL kinase superfamily.LRR-XV kinase CLI1, RPK2, TOAD2, evm_27.TU.AmTr_v1.0_scaffold00016.228 0.9059519008228842 40 AMTR_s00033p00127000 RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease ATDCL3, DCL3, evm_27.TU.AmTr_v1.0_scaffold00033.66 0.9047327916869478 41 AMTR_s00010p00267530 Nutrient uptake.phosphorus assimilation.phosphate uptake.PHO1 phosphate transporter evm_27.TU.AmTr_v1.0_scaffold00010.539 0.9046210591884771 42 AMTR_s00052p00146690 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.SCC1 mitotic-specific Kleisin-type component ATRAD21.3, SYN4, evm_27.TU.AmTr_v1.0_scaffold00052.52 0.9046132435842511 77 AMTR_s00026p00063570 Chromatin organisation.histone modifications.histone acetylation.CBP/p300 histone acetyltransferase ATHPCAT2, HAC1, ATHAC1, PCAT2, evm_27.TU.AmTr_v1.0_scaffold00026.20 0.9043979961673552 80 AMTR_s00060p00144370 Pentatricopeptide repeat-containing protein At2g01740 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00060.86 0.9042580582271128 45 AMTR_s00011p00219510 evm_27.TU.AmTr_v1.0_scaffold00011.94 0.9041965292633964 46 AMTR_s00110p00099550 Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00110.61 0.9038007459588281 65 AMTR_s00088p00128580 DNA damage response.DNA repair mechanisms.base excision repair (BER).bifunctional DNA glycosylase/lyase (ROS1) DML1, ROS1, evm_27.TU.AmTr_v1.0_scaffold00088.93 0.9031007513037339 49 AMTR_s00003p00269660 evm_27.TU.AmTr_v1.0_scaffold00003.413 0.9006641407608166 61 AMTR_s00149p00069080 DAR GTPase 2, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00149.47 0.8994360725457897 99 AMTR_s00185p00017870 Protein MAIN-LIKE 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00185.2 0.8985103557344625 59 AMTR_s00061p00215990 Cell cycle.mitosis and meiosis.chromosome segregation.centromere assembly and maintenance.WYRD inner centromere protein evm_27.TU.AmTr_v1.0_scaffold00061.279 0.8981428979362222 99 AMTR_s00012p00226630 Chromatin organisation.DNA methylation.canonical RNA-directed DNA methylation pathway.IDN/IDP regulatory protein RDM12, IDN2, evm_27.TU.AmTr_v1.0_scaffold00012.177 0.8980723483970167 62 AMTR_s00025p00217750 Chloroplast envelope membrane protein OS=Chlorokybus atmophyticus evm_27.TU.AmTr_v1.0_scaffold00025.298 0.8974100637840545 63 AMTR_s04272p00004560 SDG18, SUVR2, evm_27.TU.AmTr_v1.0_scaffold04272.1 0.8970900997860985 65 AMTR_s00053p00126930 evm_27.TU.AmTr_v1.0_scaffold00053.75 0.8968549246695132 88 AMTR_s00109p00125940 External stimuli response.biotic stress.pathogen effector.NLR effector receptor 0.8968219706580319 67 AMTR_s00025p00159760 RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.PHD transcription factor PRHA, evm_27.TU.AmTr_v1.0_scaffold00025.181 0.8965104443048725 99 AMTR_s00012p00229720 Factor of DNA methylation 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00012.183 0.8963299437953586 70 AMTR_s00037p00234680 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Rad5/16-like group.Rad5-like chromatin remodeling factor evm_27.TU.AmTr_v1.0_scaffold00037.154 0.8960866669037931 85 AMTR_s00049p00016550 evm_27.TU.AmTr_v1.0_scaffold00049.6 0.8947459335589389 91 AMTR_s00119p00084460 Pentatricopeptide repeat-containing protein At2g27800, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00119.60 0.8936913197169021 78 AMTR_s00003p00258530 Vesicle trafficking.target membrane tethering.TRAPP (Trafficking-Protein-Particle) complexes.TRAPP-II complex-specific components.TRS130/CLUB component CLUB, AtTRS130, evm_27.TU.AmTr_v1.0_scaffold00003.323 0.8931187133730797 93 AMTR_s00008p00223790 RNA biosynthesis.RNA polymerase II-dependent transcription.PAF1C transcription initiation and elongation complex.VIP6/CTR9 component evm_27.TU.AmTr_v1.0_scaffold00008.143 0.893078010359335 81 AMTR_s00030p00222710 Protein TRANSPARENT TESTA 9 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00030.171 0.8929850173462055 82 AMTR_s00081p00144410 Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase evm_27.TU.AmTr_v1.0_scaffold00081.55 0.8928503208528916 83 AMTR_s00096p00014800 evm_27.TU.AmTr_v1.0_scaffold00096.3 0.8913350518156019 85 AMTR_s00011p00029200 evm_27.TU.AmTr_v1.0_scaffold00011.5 0.8912372275901992 86 AMTR_s00130p00090930 Pentatricopeptide repeat-containing protein At5g24830 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00130.42 0.8900592792463448 89 AMTR_s00106p00113730 DNA damage response.DNA repair mechanisms.homologous recombination repair (HR).Smc5-Smc6 complex.SMC6 component ATRAD18, SMC6B, MIM, evm_27.TU.AmTr_v1.0_scaffold00106.86 0.8900563681276011 94 AMTR_s00030p00197350 RuvB-like protein 1 OS=Arabidopsis thaliana ATTIP49A, RIN1, evm_27.TU.AmTr_v1.0_scaffold00030.129 0.8878198451466554 100