Sequence Description Alias PCC hrr AMTR_s00002p00210720 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL19 component evm_27.TU.AmTr_v1.0_scaffold00002.217 0.9639999253288248 1 AMTR_s00020p00012640 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea evm_27.TU.AmTr_v1.0_scaffold00020.3 0.9509248777277459 3 AMTR_s00066p00198600 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.VIPP protein PTAC4, VIPP1, evm_27.TU.AmTr_v1.0_scaffold00066.264 0.9414390323872622 4 AMTR_s00078p00084050 evm_27.TU.AmTr_v1.0_scaffold00078.57 0.9396991824922873 4 AMTR_s00041p00009900 evm_27.TU.AmTr_v1.0_scaffold00041.2 0.9330781846388008 5 AMTR_s00061p00196800 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group evm_27.TU.AmTr_v1.0_scaffold00061.232 0.9299840921168708 26 AMTR_s00009p00072720 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor SIGF, SIG6, SOLDAT8, ATSIG6, evm_27.TU.AmTr_v1.0_scaffold00009.21 0.9281813004743267 9 AMTR_s00010p00237980 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase ATATH13, OSA1, ATH13, ATOSA1, evm_27.TU.AmTr_v1.0_scaffold00010.293 0.9257878480578532 25 AMTR_s00044p00143330 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.LPA3 protein LPA3, evm_27.TU.AmTr_v1.0_scaffold00044.141 0.9217519034668455 17 AMTR_s00039p00096400 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.7-hydroxymethyl chlorophyll(ide) a reductase evm_27.TU.AmTr_v1.0_scaffold00039.54 0.9211706640564624 14 AMTR_s00049p00176170 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.regulation.CbbY xylulose-1,5-bisphosphate phosphatase evm_27.TU.AmTr_v1.0_scaffold00049.168 0.9210296948750637 20 AMTR_s00071p00149740 Photosynthesis.photophosphorylation.photosystem II.photoprotection.MPH1 protein evm_27.TU.AmTr_v1.0_scaffold00071.135 0.9201995638999627 46 AMTR_s00058p00147520 Probable 2-carboxy-D-arabinitol-1-phosphatase OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00058.114 0.9192456343246004 16 AMTR_s00004p00107700 Protein modification.peptide maturation.plastid.EGY protease EGY1, evm_27.TU.AmTr_v1.0_scaffold00004.86 0.9192380194647694 16 AMTR_s00054p00095350 Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-II histone deacetylase ATHDA14, hda14, evm_27.TU.AmTr_v1.0_scaffold00054.32 0.9190214674033659 29 AMTR_s00019p00236430 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.transfer phase.NFU1/2/3 component ATCNFU3, NFU3, evm_27.TU.AmTr_v1.0_scaffold00019.332 0.9186190989159244 16 AMTR_s00103p00115980 Protein TAB2 homolog, chloroplastic OS=Arabidopsis thaliana ATAB2, evm_27.TU.AmTr_v1.0_scaffold00103.69 0.9145564239917765 17 AMTR_s00142p00060790 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.transfer phase.HCF101 component HCF101, evm_27.TU.AmTr_v1.0_scaffold00142.34 0.9145534525693376 24 AMTR_s00004p00145140 evm_27.TU.AmTr_v1.0_scaffold00004.142 0.914493328943934 19 AMTR_s00099p00023240 evm_27.TU.AmTr_v1.0_scaffold00099.10 0.9136047589547408 20 AMTR_s00107p00035950 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL1 component evm_27.TU.AmTr_v1.0_scaffold00107.14 0.9133699070623138 24 AMTR_s00038p00072170 Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00038.31 0.9129473328596065 22 AMTR_s00049p00107230 evm_27.TU.AmTr_v1.0_scaffold00049.81 0.9115874741084949 49 AMTR_s00021p00213260 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group.TPT phosphometabolite transporter TPT, APE2, evm_27.TU.AmTr_v1.0_scaffold00021.188 0.9109301973586813 24 AMTR_s00045p00116920 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecA1 component SECA1, AtcpSecA, AGY1, evm_27.TU.AmTr_v1.0_scaffold00045.113 0.9103273327426461 48 AMTR_s00006p00252810 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp90 family.Hsp90 protein EMB1956, Hsp88.1, HSP90.5, AtHsp90.5, CR88, evm_27.TU.AmTr_v1.0_scaffold00006.165 0.9100076541358811 29 AMTR_s00003p00212290 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS1 component RPS1, ARRPS1, evm_27.TU.AmTr_v1.0_scaffold00003.203 0.9099980059337703 30 AMTR_s00040p00174940 Flagellar radial spoke protein 5 OS=Chlamydomonas reinhardtii evm_27.TU.AmTr_v1.0_scaffold00040.165 0.909864563787377 32 AMTR_s00029p00233910 Protein modification.peptide maturation.plastid.EGY protease ATEGY2, EGY2, evm_27.TU.AmTr_v1.0_scaffold00029.376 0.9093937272285529 31 AMTR_s00077p00179590 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.Mg-protoporphyrin IX monomethylester cyclase complex.LCAA scaffolding component evm_27.TU.AmTr_v1.0_scaffold00077.201 0.9082621443609873 30 AMTR_s00099p00089660 evm_27.TU.AmTr_v1.0_scaffold00099.67 0.9078306375209233 31 AMTR_s00106p00046740 Protein biosynthesis.aminoacyl-tRNA synthetase activities.leucine-tRNA ligase EMB2369, evm_27.TU.AmTr_v1.0_scaffold00106.25 0.9075083952846534 40 AMTR_s00137p00042790 Protein biosynthesis.organelle translation machineries.translation initiation.IF-3 initiation factor evm_27.TU.AmTr_v1.0_scaffold00137.14 0.9050253391290736 33 AMTR_s00042p00221280 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen CYP97B3, evm_27.TU.AmTr_v1.0_scaffold00042.72 0.9048603553174802 57 AMTR_s00115p00062270 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.Y3IP1 protein AtCEST, CEST, evm_27.TU.AmTr_v1.0_scaffold00115.3 0.9047452741384222 35 AMTR_s00002p00256470 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00002.408 0.9045480168359182 53 AMTR_s00071p00187330 Prolycopene isomerase, chloroplastic OS=Daucus carota evm_27.TU.AmTr_v1.0_scaffold00071.196 0.9041565925142697 37 AMTR_s00048p00030920 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo assembly.RAF2 assembly factor evm_27.TU.AmTr_v1.0_scaffold00048.6 0.9028464303536385 38 AMTR_s00354p00009120 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP3/TAC10 component PTAC10, PDE312, evm_27.TU.AmTr_v1.0_scaffold00354.1 0.9027364735427272 44 AMTR_s00068p00029180 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.ZDS zeta-carotene desaturase PDE181, ZDS, SPC1, evm_27.TU.AmTr_v1.0_scaffold00068.6 0.9026185996383758 71 AMTR_s00012p00257120 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC16 component PTAC16, evm_27.TU.AmTr_v1.0_scaffold00012.301 0.9025246415142008 73 AMTR_s00012p00154880 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.ALB3 component ALB3, evm_27.TU.AmTr_v1.0_scaffold00012.92 0.9023015435733873 59 AMTR_s00001p00188890 Carbohydrate metabolism.starch metabolism.synthesis.plastidial phosphoglucomutase PGM, PGM1, STF1, ATPGMP, evm_27.TU.AmTr_v1.0_scaffold00001.187 0.9021772507005789 43 AMTR_s00078p00073300 evm_27.TU.AmTr_v1.0_scaffold00078.44 0.901689994774619 44 AMTR_s00004p00095690 RNA processing.organelle machineries.ribonuclease activities.PNP polynucleotide phosphorylase RIF10, PNP, evm_27.TU.AmTr_v1.0_scaffold00004.78 0.9012697270276812 45 AMTR_s00031p00204460 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.cpSRP54 component 54CP, SRP54CP, CPSRP54, FFC, evm_27.TU.AmTr_v1.0_scaffold00031.99 0.9011782775013738 75 AMTR_s00001p00228610 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF244 protein evm_27.TU.AmTr_v1.0_scaffold00001.239 0.9008777424111213 47 AMTR_s00029p00122880 Disease resistance protein RPS5 OS=Arabidopsis thaliana RPS5, evm_27.TU.AmTr_v1.0_scaffold00029.137 0.9007071959267118 52 AMTR_s00040p00202990 2-carboxy-D-arabinitol-1-phosphatase OS=Triticum aestivum evm_27.TU.AmTr_v1.0_scaffold00040.206 0.8996791615282852 61 AMTR_s00059p00156080 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCS cytochrome f/c6 maturation system (system II).CcsB component evm_27.TU.AmTr_v1.0_scaffold00059.142 0.8996789384143806 50 AMTR_s00004p00065250 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.MET1 protein ZKT, evm_27.TU.AmTr_v1.0_scaffold00004.48 0.8996185697466437 51 AMTR_s00049p00119540 Redox homeostasis.chloroplast redox homeostasis.F-type thioredoxin ATF1, TRXF1, evm_27.TU.AmTr_v1.0_scaffold00049.94 0.8986925387278936 52 AMTR_s00072p00084990 Photosynthesis.photophosphorylation.cytochrome b6/f complex.Rieske iron-sulfur component PetC PGR1, PETC, evm_27.TU.AmTr_v1.0_scaffold00072.37 0.8981477163976331 76 AMTR_s00024p00130820 evm_27.TU.AmTr_v1.0_scaffold00024.77 0.8979191089200516 54 AMTR_s00122p00077720 Photosynthesis.photorespiration.glycerate kinase evm_27.TU.AmTr_v1.0_scaffold00122.28 0.8966586641152812 55 AMTR_s00077p00134480 Protein modification.phosphorylation.CMGC kinase superfamily.STN kinase STN8, evm_27.TU.AmTr_v1.0_scaffold00077.129 0.8959800780331967 56 AMTR_s00029p00219050 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH7/9 component ftsh9, evm_27.TU.AmTr_v1.0_scaffold00029.331 0.8958068905218348 57 AMTR_s00029p00221060 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL4 component RPL4, evm_27.TU.AmTr_v1.0_scaffold00029.338 0.8955241086923009 58 AMTR_s00025p00127130 evm_27.TU.AmTr_v1.0_scaffold00025.119 0.8953608835749493 59 AMTR_s00010p00244200 evm_27.TU.AmTr_v1.0_scaffold00010.319 0.89532486586017 60 AMTR_s00016p00219550 evm_27.TU.AmTr_v1.0_scaffold00016.199 0.8939727155320326 61 AMTR_s00132p00112670 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll breakdown.red chlorophyll catabolite reductase (RCCR) ATRCCR, ACD2, evm_27.TU.AmTr_v1.0_scaffold00132.27 0.8939699426566594 62 AMTR_s00119p00060890 Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana VAR3, evm_27.TU.AmTr_v1.0_scaffold00119.41 0.893489197381987 63 AMTR_s00031p00061040 Uncharacterized protein At5g03900, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00031.26 0.8931735876519165 64 AMTR_s00058p00093170 evm_27.TU.AmTr_v1.0_scaffold00058.50 0.8930971553743712 65 AMTR_s00078p00161460 DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica RH39, evm_27.TU.AmTr_v1.0_scaffold00078.147 0.8925988374595196 66 AMTR_s00058p00193720 Protein modification.dephosphorylation.tyrosine protein phosphatase (PTP) superfamily.dual-specificity phosphatase families.LSF phosphoglucan phosphatase LSF1, evm_27.TU.AmTr_v1.0_scaffold00058.193 0.8925027760618165 67 AMTR_s00046p00146170 evm_27.TU.AmTr_v1.0_scaffold00046.79 0.8921294308074948 78 AMTR_s00061p00120110 Carbohydrate metabolism.starch metabolism.synthesis.ADP-glucose pyrophosphorylase ADG1, APS1, evm_27.TU.AmTr_v1.0_scaffold00061.96 0.8919367258458588 69 AMTR_s00010p00265920 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex B.PnsB4/NDF6 component NDF6, evm_27.TU.AmTr_v1.0_scaffold00010.515 0.8918798175884467 70 AMTR_s00092p00149880 Uncharacterized oxidoreductase At1g06690, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.118 0.8918210948043226 71 AMTR_s00109p00098140 Lipid metabolism.fatty acid synthesis.mitochondrial Type II fatty acid synthase (mtFAS) system.malonyl-CoA synthetase (mtMCS) evm_27.TU.AmTr_v1.0_scaffold00109.86 0.8918171847967372 72 AMTR_s00071p00199450 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCD transporter evm_27.TU.AmTr_v1.0_scaffold00071.217 0.8918164968129138 95 AMTR_s00121p00128060 Cell cycle.organelle machineries.organelle fission.plastid division.ARC5 dynamin-like protein DRP5B, ARC5, evm_27.TU.AmTr_v1.0_scaffold00121.36 0.8917359144378646 74 AMTR_s00066p00184560 Protein biosynthesis.organelle translation machineries.translation termination.PrfB-type peptide chain release factor ATPRFB, HCF109, evm_27.TU.AmTr_v1.0_scaffold00066.232 0.8917342723732093 75 AMTR_s00003p00257280 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00003.320 0.8911260937690753 91 AMTR_s00050p00111180 Carbohydrate metabolism.starch metabolism.degradation.dephosphorylation.SEX4-type phosphoglucan phosphatase ATSEX4, ATPTPKIS1, DSP4, SEX4, evm_27.TU.AmTr_v1.0_scaffold00050.23 0.8908868083716713 77 AMTR_s00001p00203320 D-ribulose kinase OS=Arabidopsis thaliana XK1, XK-1, evm_27.TU.AmTr_v1.0_scaffold00001.204 0.8907393575869007 78 AMTR_s00003p00168720 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.RH3 basal splicing factor emb1138, evm_27.TU.AmTr_v1.0_scaffold00003.145 0.8905644975891086 85 AMTR_s00023p00186390 External stimuli response.light.UV-A/blue light.phototropin-mediated photoperception.phototropin photoreceptor RPT1, PHOT1, NPH1, JK224, evm_27.TU.AmTr_v1.0_scaffold00023.124 0.8902562360051087 80 AMTR_s00058p00188880 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease DEGP1, Deg1, evm_27.TU.AmTr_v1.0_scaffold00058.187 0.889861987048558 81 AMTR_s00007p00156370 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.chlorophyll synthase ChlG CHLG, G4, ATG4, evm_27.TU.AmTr_v1.0_scaffold00007.117 0.8895777951917532 82 AMTR_s00011p00266100 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor SIGB, SIG2, SIGA, SIG1, RPOD1, evm_27.TU.AmTr_v1.0_scaffold00011.228 0.8889320266922917 84 AMTR_s00002p00197820 RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.183 0.8889207456410783 85 AMTR_s00110p00094310 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase evm_27.TU.AmTr_v1.0_scaffold00110.55 0.8884601096186318 86 AMTR_s00022p00112770 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCq component evm_27.TU.AmTr_v1.0_scaffold00022.100 0.888047890476493 87 AMTR_s00012p00252840 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.one-helix LHC-related protein group.OHP1 protein evm_27.TU.AmTr_v1.0_scaffold00012.263 0.885882962697444 88 AMTR_s00001p00271310 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.xanthophyll synthesis.carotenoid epsilon ring hydroxylase CYP97C1, LUT1, evm_27.TU.AmTr_v1.0_scaffold00001.484 0.8854916153968206 89 AMTR_s00130p00051210 evm_27.TU.AmTr_v1.0_scaffold00130.20 0.8852679629309831 90 AMTR_s00109p00113060 Redox homeostasis.low-molecular-weight scavengers.tocopherol biosynthesis.tocopherol cyclase (VTE1/TC) ATSDX1, VTE1, evm_27.TU.AmTr_v1.0_scaffold00109.111 0.8849890643075089 91 AMTR_s00039p00197260 Cytoskeleton.microfilament network.actin polymerisation.Arp2/3 actin polymerization initiation complex.ArpC1 component ARPC1B, ARPC1, evm_27.TU.AmTr_v1.0_scaffold00039.162 0.8848181995194958 92 AMTR_s00002p00128010 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP9/FSD2 component FSD2, evm_27.TU.AmTr_v1.0_scaffold00002.85 0.8840877284805846 93 AMTR_s00117p00058770 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.xanthophyll synthesis.VDE violaxanthin de-epoxidase NPQ1, AVDE1, evm_27.TU.AmTr_v1.0_scaffold00117.15 0.883114169806959 94 AMTR_s00002p00029100 Cytoskeleton.cp-actin-dependent plastid movement.KAC accessory motility factor KCA2, KAC2, evm_27.TU.AmTr_v1.0_scaffold00002.13 0.8828975015614156 95 AMTR_s00025p00248100 Probable transmembrane GTPase FZO-like, chloroplastic OS=Arabidopsis thaliana FZL, evm_27.TU.AmTr_v1.0_scaffold00025.402 0.882814007724833 96 AMTR_s00055p00165940 Protein biosynthesis.aminoacyl-tRNA synthetase activities.threonine-tRNA ligase EMB2761, evm_27.TU.AmTr_v1.0_scaffold00055.86 0.8825553766146891 97 AMTR_s00106p00108310 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component VAR2, FTSH2, evm_27.TU.AmTr_v1.0_scaffold00106.79 0.8824898476587603 98 AMTR_s00003p00268300 GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00003.397 0.8823138375359796 99 AMTR_s00059p00183340 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.HCF164 thioredoxin-like factor HCF164, evm_27.TU.AmTr_v1.0_scaffold00059.198 0.8822765613714131 100