Sequence Description Alias PCC hrr AMTR_s00061p00131900 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA decapping complex.VCS scaffold component VCS, evm_27.TU.AmTr_v1.0_scaffold00061.110 0.927368195885678 13 AMTR_s00111p00143180 Vesicle trafficking.Coat protein II (COPII) coatomer machinery.coat protein complex.Sec31 scaffolding component evm_27.TU.AmTr_v1.0_scaffold00111.123 0.9216986089026359 3 AMTR_s00025p00214350 Polyadenylate-binding protein 2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00025.288 0.9132480725897621 9 AMTR_s00061p00204480 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.HECT E3 monomeric ligase UPL1 0.9059411434408509 36 AMTR_s00046p00089870 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).PRPF8/SUS2 protein component EMB33, SUS2, EMB177, EMB14, evm_27.TU.AmTr_v1.0_scaffold00046.46 0.9051404149669933 99 AMTR_s00068p00181410 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic subunits.subunit 2 EMB1989, RPB2, NRPB2, evm_27.TU.AmTr_v1.0_scaffold00068.139 0.9050571677576758 99 AMTR_s00004p00111480 RNA processing.RNA decay.exosome complex.associated co-factors.RRP6L exoribonuclease evm_27.TU.AmTr_v1.0_scaffold00004.91 0.9044152355083162 8 AMTR_s00010p00226160 evm_27.TU.AmTr_v1.0_scaffold00010.253 0.9042349811427886 38 AMTR_s00069p00204310 evm_27.TU.AmTr_v1.0_scaffold00069.223 0.9034319078372168 74 AMTR_s00063p00087380 Chromatin organisation.chromatin remodeling complexes.ATPase core components.SSO1653-like group.SHPRH chromatin remodeling factor evm_27.TU.AmTr_v1.0_scaffold00063.12 0.9031716428910235 24 AMTR_s00086p00132870 evm_27.TU.AmTr_v1.0_scaffold00086.75 0.902701178371046 25 AMTR_s00040p00210200 RNA processing.RNA 3-end polyadenylation.Cleavage Factor II (CF-IIm) complex.Pcf11 component evm_27.TU.AmTr_v1.0_scaffold00040.222 0.9017896767066378 77 AMTR_s00071p00142490 RNA processing.RNA decay.Nonsense-Mediated mRNA Decay (NMD).UPF1 effector protein UPF1, ATUPF1, LBA1, evm_27.TU.AmTr_v1.0_scaffold00071.128 0.9005207095209704 20 AMTR_s00053p00201040 DnaJ protein P58IPK homolog OS=Arabidopsis thaliana TPR16, evm_27.TU.AmTr_v1.0_scaffold00053.155 0.8995729295046961 16 AMTR_s00009p00244590 evm_27.TU.AmTr_v1.0_scaffold00009.231 0.8986852621539099 52 AMTR_s00682p00010920 Chromatin organisation.histone chaperone activities.FACT histone chaperone complex.SPT16 component SPT16, evm_27.TU.AmTr_v1.0_scaffold00682.1 0.8970548455327446 61 AMTR_s00046p00223780 Protein degradation.peptidase families.metallopeptidase activities.M3 protease evm_27.TU.AmTr_v1.0_scaffold00046.160 0.8959158898926972 54 AMTR_s00045p00114550 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM3-type splicing factor evm_27.TU.AmTr_v1.0_scaffold00045.110 0.8955901612758134 27 AMTR_s00022p00128600 RNA biosynthesis.transcriptional activation.ARID transcription factor evm_27.TU.AmTr_v1.0_scaffold00022.121 0.8955514682557593 46 AMTR_s00044p00137040 Solute transport.channels.GLR ligand-gated cation channel GLR3.3, ATGLR3.3, evm_27.TU.AmTr_v1.0_scaffold00044.128 0.8947896730226377 72 AMTR_s00024p00250820 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA decapping complex.DCP5 regulatory component DCP5, evm_27.TU.AmTr_v1.0_scaffold00024.336 0.8938591786361122 49 AMTR_s00057p00189360 Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00057.205 0.8935266673873754 27 AMTR_s00061p00084390 Vesicle trafficking.Coat protein II (COPII) coatomer machinery.coat protein complex.Sec23/24 cargo adaptor subcomplex.Sec24 component evm_27.TU.AmTr_v1.0_scaffold00061.60 0.8920969636521627 43 AMTR_s00079p00078710 RNA biosynthesis.transcriptional activation.TAZ histone acetylase transcription factor ATHPCAT2, HAC1, ATHAC1, PCAT2, evm_27.TU.AmTr_v1.0_scaffold00079.26 0.8909765625898186 48 AMTR_s00101p00092980 ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana FAS4, ATFAS4, evm_27.TU.AmTr_v1.0_scaffold00101.70 0.8900765785242002 88 AMTR_s00011p00240280 Protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial OS=Arabidopsis thaliana NFD5, evm_27.TU.AmTr_v1.0_scaffold00011.135 0.890054140542999 33 AMTR_s00111p00089410 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UTP10 assembly factor evm_27.TU.AmTr_v1.0_scaffold00111.60 0.8885956803963921 35 AMTR_s00007p00263470 COP1-interacting protein 7 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00007.340 0.8881885390691845 92 AMTR_s00080p00131040 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase HERK1, evm_27.TU.AmTr_v1.0_scaffold00080.56 0.8865472307501213 54 AMTR_s00007p00264760 evm_27.TU.AmTr_v1.0_scaffold00007.353 0.8856831067934061 43 AMTR_s00022p00114710 RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Brr2 RNA helicase emb1507, evm_27.TU.AmTr_v1.0_scaffold00022.105 0.8843088604136731 56 AMTR_s00001p00126200 Protein degradation.peptidase families.aspartic-type peptidase activities.pepsin-type protease evm_27.TU.AmTr_v1.0_scaffold00001.101 0.8832550810048315 49 AMTR_s00088p00170220 FRIGIDA-like protein 3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00088.145 0.8811274832285917 54 AMTR_s00056p00165600 Inactive poly [ADP-ribose] polymerase RCD1 OS=Arabidopsis thaliana SRO5, evm_27.TU.AmTr_v1.0_scaffold00056.145 0.8811097189705922 78 AMTR_s00033p00116200 KH domain-containing protein HEN4 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00033.57 0.8805502728239041 57 AMTR_s00002p00260810 DNA damage-binding protein 1 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00002.446 0.8794474281486223 100 AMTR_s00016p00110380 evm_27.TU.AmTr_v1.0_scaffold00016.72 0.8790376036486827 60 AMTR_s00175p00030950 RNA biosynthesis.transcriptional activation.MYB superfamily.MYB-related transcription factor TKI1, evm_27.TU.AmTr_v1.0_scaffold00175.7 0.8789431687153152 61 AMTR_s00029p00079800 RNA biosynthesis.transcriptional activation.HUA2 transcription factor HUA2, evm_27.TU.AmTr_v1.0_scaffold00029.74 0.8788968648517769 62 AMTR_s00019p00246290 Nucleotide metabolism.purines.ribonucleotide (RN) anabolism.formylglycinamidine RN synthase PUR4, evm_27.TU.AmTr_v1.0_scaffold00019.386 0.8775015425925706 69 AMTR_s00059p00210260 evm_27.TU.AmTr_v1.0_scaffold00059.244 0.8774946916424644 95 AMTR_s00064p00173090 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).SR140 snRNP-associated protein evm_27.TU.AmTr_v1.0_scaffold00064.75 0.8739832997129994 83 AMTR_s00078p00132750 Protein modification.phosphorylation.atypical kinase families.TAF kinase HAF01, HAC13, TAF1, HAF1, GTD1, evm_27.TU.AmTr_v1.0_scaffold00078.111 0.8725868876922548 87 AMTR_s00099p00142540 Protein degradation.peptidase families.serine-type peptidase activities.mitochondrion Clp-type protease complex.ClpX chaperone component evm_27.TU.AmTr_v1.0_scaffold00099.130 0.8724255688510074 88 AMTR_s00092p00052470 Pentatricopeptide repeat-containing protein At1g53600, mitochondrial OS=Arabidopsis thaliana 0.8723973700955023 100 AMTR_s00164p00040330 evm_27.TU.AmTr_v1.0_scaffold00164.15 0.8704968727399216 97