Sequence Description Alias PCC hrr AMTR_s00171p00017320 Protein degradation.peptide tagging.Related-to-Ubiquitin (RUB/NEDD8)-anchor modification (neddylation).RUB deconjugation of neddylated cullin.COP9 signalosome complex.CSN3 component CSN3, FUS11, COP13, evm_27.TU.AmTr_v1.0_scaffold00171.3 0.9300236343077083 1 AMTR_s00125p00104110 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp70 family.Hsp40 Hsp70-co-chaperone evm_27.TU.AmTr_v1.0_scaffold00125.25 0.9140058951237107 3 AMTR_s00142p00098170 DNA damage response.DNA repair mechanisms.base excision repair (BER).DNA repair protein (XRCC1) ATXRCC1, evm_27.TU.AmTr_v1.0_scaffold00142.64 0.9102659930646566 3 AMTR_s00106p00102120 Chaperone protein dnaJ 13 OS=Arabidopsis thaliana OWL1, evm_27.TU.AmTr_v1.0_scaffold00106.72 0.905421271231547 4 AMTR_s00029p00198320 Protein modification.acetylation.NatE-type N-terminal acetylase evm_27.TU.AmTr_v1.0_scaffold00029.273 0.8986778763423511 6 AMTR_s00036p00219140 evm_27.TU.AmTr_v1.0_scaffold00036.153 0.8965792350244218 14 AMTR_s00056p00107780 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL7 component evm_27.TU.AmTr_v1.0_scaffold00056.81 0.8932926947353484 16 AMTR_s00012p00240300 evm_27.TU.AmTr_v1.0_scaffold00012.213 0.8932885433654086 9 AMTR_s00072p00050030 E3 ubiquitin-protein ligase CSU1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00072.18 0.8879495507889195 9 AMTR_s00129p00094040 evm_27.TU.AmTr_v1.0_scaffold00129.66 0.8856767494297819 10 AMTR_s00086p00180250 evm_27.TU.AmTr_v1.0_scaffold00086.118 0.8843080979415094 11 AMTR_s00053p00199490 RNA processing.RNA 5-end cap adding.mRNA cap methyltransferase evm_27.TU.AmTr_v1.0_scaffold00053.152 0.883440722545261 12 AMTR_s00005p00135530 Protein modification.hydroxylation.prolyl hydroxylase AT-P4H-1, evm_27.TU.AmTr_v1.0_scaffold00005.43 0.8828695573834477 16 AMTR_s00067p00163830 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.MRG histone H3K4/H3K36 methylation reader evm_27.TU.AmTr_v1.0_scaffold00067.165 0.8806430860442955 14 AMTR_s00056p00076060 Enzyme classification.EC_3 hydrolases.EC_3.1 hydrolase acting on ester bond evm_27.TU.AmTr_v1.0_scaffold00056.55 0.877260244506793 15 AMTR_s00056p00181790 Protein degradation.peptidase families.cysteine-type peptidase activities.PPPDE-type peptidase evm_27.TU.AmTr_v1.0_scaffold00056.161 0.8732750795979272 16 AMTR_s00071p00022960 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.Sdo1 maturation factor evm_27.TU.AmTr_v1.0_scaffold00071.10 0.8724799975122179 40 AMTR_s00121p00130180 RNA processing.RNA quality control Exon Junction complex (EJC).core components.Magoh component HAP1, MEE63, MAGO, evm_27.TU.AmTr_v1.0_scaffold00121.38 0.8721925259261817 18 AMTR_s00010p00251310 Vesicle trafficking.endomembrane trafficking.protein recycling.Retromer protein recycling complex.VPS29 component MAG1, VPS29, ATVPS29, evm_27.TU.AmTr_v1.0_scaffold00010.359 0.8719785807861133 31 AMTR_s00017p00094950 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS27a component UBQ6, evm_27.TU.AmTr_v1.0_scaffold00017.35 0.8710494338442631 44 AMTR_s00031p00134850 Cell cycle.interphase.DNA replication.elongation.DNA polymerase epsilon complex.Dpb4 non-catalytic component NF-YB11, evm_27.TU.AmTr_v1.0_scaffold00031.57 0.8707168115293684 21 AMTR_s00077p00123980 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL36a component evm_27.TU.AmTr_v1.0_scaffold00077.117 0.8689820921682706 43 AMTR_s00041p00045860 Protein root UVB sensitive 4 OS=Arabidopsis thaliana RUS4, evm_27.TU.AmTr_v1.0_scaffold00041.19 0.8682403303800248 23 AMTR_s00009p00267300 evm_27.TU.AmTr_v1.0_scaffold00009.404 0.8680733492141205 30 AMTR_s00045p00206320 Protein biosynthesis.organelle translation machineries.mitochondrial ribosome.large subunit proteome.mtRPL29 component evm_27.TU.AmTr_v1.0_scaffold00045.273 0.8675419965651386 25 AMTR_s00114p00125610 Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00114.58 0.866569359804911 26 AMTR_s00055p00220020 Protein degradation.26S proteasome.20S core protease.beta-type subunits.beta type-6 component PBF1, evm_27.TU.AmTr_v1.0_scaffold00055.168 0.865599639448719 27 AMTR_s00067p00130250 Pentatricopeptide repeat-containing protein At3g51320 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00067.112 0.864083117442515 28 AMTR_s00071p00094030 MEE21, evm_27.TU.AmTr_v1.0_scaffold00071.69 0.8637110167303038 67 AMTR_s00061p00048280 Protein degradation.peptide tagging.Related-to-Ubiquitin (RUB/NEDD8)-anchor modification (neddylation).RUB deconjugation of neddylated cullin.COP9 signalosome complex.CSN6 component CSN6A, evm_27.TU.AmTr_v1.0_scaffold00061.24 0.8633207553976814 33 AMTR_s00045p00111810 evm_27.TU.AmTr_v1.0_scaffold00045.108 0.8622619243744175 31 AMTR_s00045p00203370 evm_27.TU.AmTr_v1.0_scaffold00045.268 0.8614657339071067 39 AMTR_s00007p00263070 evm_27.TU.AmTr_v1.0_scaffold00007.339 0.8613485542065781 33 AMTR_s00088p00173270 Protein modification.phosphorylation.STE kinase superfamily.MAP3K-WNK kinase evm_27.TU.AmTr_v1.0_scaffold00088.148 0.8610984801006256 34 AMTR_s00068p00184270 Probable ubiquitin-conjugating enzyme E2 24 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00068.144 0.8607264164644891 36 AMTR_s00228p00021360 Vesicle trafficking.Coat protein I (COPI) coatomer machinery.trafficking regulation.ERD2 K/HDEL-signature receptor ERD2B, evm_27.TU.AmTr_v1.0_scaffold00228.1 0.8586862953027525 36 AMTR_s00041p00225840 evm_27.TU.AmTr_v1.0_scaffold00041.262 0.8578541397412996 37 AMTR_s00003p00269280 Cellular respiration.oxidative phosphorylation.ATP synthase complex.membrane MF0 subcomplex.subunit d ATPQ, evm_27.TU.AmTr_v1.0_scaffold00003.405 0.8539518226526084 46 AMTR_s00003p00234980 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL18a component evm_27.TU.AmTr_v1.0_scaffold00003.236 0.8533515119685458 66 AMTR_s00070p00186600 evm_27.TU.AmTr_v1.0_scaffold00070.119 0.851970970650882 41 AMTR_s00002p00265480 Cytoskeleton.actin and tubulin folding.Prefoldin co-chaperone complex.PFD4 component PFD4, AIP3, evm_27.TU.AmTr_v1.0_scaffold00002.498 0.8514042198296854 42 AMTR_s00079p00103020 evm_27.TU.AmTr_v1.0_scaffold00079.36 0.8513890351017867 43 AMTR_s00025p00026830 evm_27.TU.AmTr_v1.0_scaffold00025.11 0.8506448896593176 55 AMTR_s00093p00102680 Vesicle trafficking.endomembrane trafficking.protein recycling.Retromer protein recycling complex.VPS26c component evm_27.TU.AmTr_v1.0_scaffold00093.33 0.8506004429229538 79 AMTR_s00012p00170560 evm_27.TU.AmTr_v1.0_scaffold00012.105 0.8499704069850728 46 AMTR_s00010p00267420 Protein modification.protein folding and quality control.protein folding catalyst activities.Parvulin peptidyl-prolyl isomerase evm_27.TU.AmTr_v1.0_scaffold00010.536 0.8497832968368466 47 AMTR_s00044p00115050 Protein modification.N-linked glycosylation.oligosaccharyl transferase (OST) complex.OST1 component evm_27.TU.AmTr_v1.0_scaffold00044.89 0.8494095120741026 48 AMTR_s00048p00077520 Binding partner of ACD11 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00048.36 0.8474310569334822 49 AMTR_s00002p00272080 Protein degradation.26S proteasome.20S core protease.beta-type subunits.beta type-4 component PRCGB, PBD1, evm_27.TU.AmTr_v1.0_scaffold00002.660 0.8464199270452583 67 AMTR_s00057p00216750 Coenzyme metabolism.coenzyme A synthesis.dephospho-coenzyme A kinase ATCOAE, evm_27.TU.AmTr_v1.0_scaffold00057.275 0.8461304001382521 51 AMTR_s00136p00077480 evm_27.TU.AmTr_v1.0_scaffold00136.37 0.8458219770309482 52 AMTR_s00007p00136130 evm_27.TU.AmTr_v1.0_scaffold00007.89 0.8441330999722642 53 AMTR_s00116p00067970 Protein translocation.endoplasmic reticulum.co-translational insertion system.SRP (signal recognition particle) complex.SRP14 component evm_27.TU.AmTr_v1.0_scaffold00116.6 0.8430009593792739 64 AMTR_s00062p00187560 Enzyme classification.EC_3 hydrolases.EC_3.6 hydrolase acting on acid anhydride HINT 2, evm_27.TU.AmTr_v1.0_scaffold00062.187 0.8428274680893503 56 AMTR_s00077p00139260 Redox homeostasis.cytosol/mitochondrion/nucleus redox homeostasis.H-type thioredoxin ATH9, TH9, TRX H9, evm_27.TU.AmTr_v1.0_scaffold00077.137 0.84201351350402 57 AMTR_s00015p00258610 evm_27.TU.AmTr_v1.0_scaffold00015.121 0.8419772061038495 58 AMTR_s00099p00164950 evm_27.TU.AmTr_v1.0_scaffold00099.165 0.8416186252269157 59 AMTR_s00033p00148790 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U4/U6 U5 small nuclear ribonucleoprotein particle (snRNP).SNU23 component evm_27.TU.AmTr_v1.0_scaffold00033.94 0.841596442363844 92 AMTR_s00068p00034280 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.regulatory subunits.subunit 5 NRPD5, ATRPABC24.3, NRPB5, RPB5A, evm_27.TU.AmTr_v1.0_scaffold00068.11 0.8415741634261226 61 AMTR_s00012p00142410 evm_27.TU.AmTr_v1.0_scaffold00012.81 0.8410700513533568 62 AMTR_s00006p00263680 Plant cysteine oxidase 3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00006.253 0.8406020458546508 64 AMTR_s00019p00040900 evm_27.TU.AmTr_v1.0_scaffold00019.21 0.8403589323032851 81 AMTR_s00018p00200030 evm_27.TU.AmTr_v1.0_scaffold00018.119 0.8401791149224646 66 AMTR_s00048p00062300 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL9 component evm_27.TU.AmTr_v1.0_scaffold00048.24 0.8395327917633382 67 AMTR_s00030p00185140 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.NSA2 maturation factor evm_27.TU.AmTr_v1.0_scaffold00030.118 0.8394559139620535 93 AMTR_s00137p00025010 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ligase complexes.F-BOX substrate adaptor components.SKP component SKIP1, evm_27.TU.AmTr_v1.0_scaffold00137.4 0.8361898365012302 71 AMTR_s00029p00239730 RNA processing.RNA modification.tRNA N6-threonylcarbamoylation.KEOPS/EKC complex.CGI121 component 0.835651262644036 73 AMTR_s00069p00095150 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL24 component RPL24A, evm_27.TU.AmTr_v1.0_scaffold00069.59 0.8353060166597429 82 AMTR_s00103p00136100 evm_27.TU.AmTr_v1.0_scaffold00103.88 0.8347903446496606 97 AMTR_s00002p00271890 Chromatin organisation.DNA methylation.canonical RNA-directed DNA methylation pathway.DNA methylation accessory complex (DDR).RDM1 component RDM1, evm_27.TU.AmTr_v1.0_scaffold00002.646 0.8344635537007996 78 AMTR_s00004p00025720 evm_27.TU.AmTr_v1.0_scaffold00004.9 0.834281236600603 79 AMTR_s00102p00065210 Cellular respiration.oxidative phosphorylation.cytochrome c oxidase complex.assembly.COX16 component evm_27.TU.AmTr_v1.0_scaffold00102.31 0.8340649188487551 80 AMTR_s00197p00027080 RNA processing.RNA splicing.spliceosome-associated non-snRNP factors.SCL28/30/33 splicing factor At-SCL28, SCL28, evm_27.TU.AmTr_v1.0_scaffold00197.8 0.8340564855063773 81 AMTR_s00023p00202890 evm_27.TU.AmTr_v1.0_scaffold00023.143 0.8332976420090816 92 AMTR_s00065p00177470 Stromal cell-derived factor 2-like protein OS=Arabidopsis thaliana SDF2, AtSDF2, ATSDL, evm_27.TU.AmTr_v1.0_scaffold00065.147 0.8332300451377528 83 AMTR_s00009p00264850 Monothiol glutaredoxin-S17 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00009.377 0.8323060718795058 84 AMTR_s00077p00121720 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF3 mRNA-to-PIC binding complex.eIF3f component EIF2, AteIF3f, eIF3F, evm_27.TU.AmTr_v1.0_scaffold00077.114 0.8316303876477588 95 AMTR_s00044p00159530 evm_27.TU.AmTr_v1.0_scaffold00044.169 0.829735736836596 86 AMTR_s00066p00069150 Enzyme classification.EC_3 hydrolases.EC_3.6 hydrolase acting on acid anhydride FHIT, evm_27.TU.AmTr_v1.0_scaffold00066.47 0.8285973582866283 87 AMTR_s00010p00093760 evm_27.TU.AmTr_v1.0_scaffold00010.52 0.8283918253364315 88 AMTR_s00003p00209480 Putative pentatricopeptide repeat-containing protein At1g02420 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00003.198 0.8274180574250742 89 AMTR_s00135p00035680 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00135.8 0.8272201956613783 99 AMTR_s00025p00070080 Protein modification.peptide maturation.endomembrane system.SPC endoplasmic signal peptidase complex.SPCs3 component evm_27.TU.AmTr_v1.0_scaffold00025.48 0.8265842301474638 91 AMTR_s00052p00194740 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF3 mRNA-to-PIC binding complex.eIF3i component evm_27.TU.AmTr_v1.0_scaffold00052.89 0.8252038459292583 92 AMTR_s00053p00163590 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL10a component evm_27.TU.AmTr_v1.0_scaffold00053.111 0.8244826068587308 100 AMTR_s00022p00215490 evm_27.TU.AmTr_v1.0_scaffold00022.257 0.8238721753378846 94 AMTR_s00871p00002780 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor evm_27.TU.AmTr_v1.0_scaffold00871.1 0.8236698613886169 95 AMTR_s00012p00103290 Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00012.56 0.8233112761600848 96 AMTR_s00051p00012470 Monothiol glutaredoxin-S15, mitochondrial OS=Arabidopsis thaliana ATGRX4, GRX4, evm_27.TU.AmTr_v1.0_scaffold00051.2 0.8232977874640259 97 AMTR_s00025p00247440 evm_27.TU.AmTr_v1.0_scaffold00025.398 0.8230884734235004 98 AMTR_s00066p00109620 evm_27.TU.AmTr_v1.0_scaffold00066.98 0.8227320437939367 99 AMTR_s00002p00108330 evm_27.TU.AmTr_v1.0_scaffold00002.66 0.8223635651267073 100