Sequence Description Alias PCC hrr AMTR_s00099p00018620 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN5 regulatory component RPN5B, evm_27.TU.AmTr_v1.0_scaffold00099.5 0.9300349160378465 7 AMTR_s00058p00175640 Protein modification.lipidation.Cys-linked prenylation.type-I protein prenyltransferase complex.subunit beta ERA1, ATFTB, WIG, evm_27.TU.AmTr_v1.0_scaffold00058.165 0.9280432546475557 2 AMTR_s00014p00250090 Vesicle trafficking.clathrin coated vesicle (CCV) machinery.AP-1 trans-Golgi network cargo adaptor complex.AP1M medium mu subunit HAP13, evm_27.TU.AmTr_v1.0_scaffold00014.130 0.9241030200207399 3 AMTR_s00007p00259060 Suppressor of mec-8 and unc-52 protein homolog 2 OS=Arabidopsis thaliana SMU2, evm_27.TU.AmTr_v1.0_scaffold00007.316 0.9227138246175677 9 AMTR_s00057p00039750 Protein modification.phosphorylation.CMGC kinase superfamily.cyclin-dependent kinase families.CDKD/CDK7 kinase CDKD1;1, CAK3AT, AT;CDKD;1, evm_27.TU.AmTr_v1.0_scaffold00057.19 0.9160943630375423 14 AMTR_s00109p00121860 evm_27.TU.AmTr_v1.0_scaffold00109.121 0.9160745477938768 17 AMTR_s00006p00256440 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF2 Met-tRNA binding factor complex.eIF2-gamma component EIF2 GAMMA, evm_27.TU.AmTr_v1.0_scaffold00006.192 0.9143390407854909 29 AMTR_s00131p00040500 Small RNA degrading nuclease 3 OS=Arabidopsis thaliana SDN3, evm_27.TU.AmTr_v1.0_scaffold00131.25 0.9120601977479336 64 AMTR_s00110p00121530 Pentatricopeptide repeat-containing protein At1g26460, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00110.96 0.9111657796288637 9 AMTR_s00051p00218610 Protein modification.dephosphorylation.tyrosine protein phosphatase (PTP) superfamily.dual-specificity phosphatase families.PTEN lipid phosphatase PEN2, ATPEN2, evm_27.TU.AmTr_v1.0_scaffold00051.97 0.911127490311303 10 AMTR_s00149p00026500 Cytoskeleton.actin and tubulin folding.CCT chaperonin folding complex.CCT2 beta subunit evm_27.TU.AmTr_v1.0_scaffold00149.8 0.9110920188897965 25 AMTR_s00014p00247240 evm_27.TU.AmTr_v1.0_scaffold00014.121 0.9105592250117235 12 AMTR_s00016p00227740 Cell cycle.mitosis and meiosis.meiotic recombination.meiotic crossover.RTR Holliday junction dissolution complex.RMI1 non-catalytic component ATRMI1, BLAP75, RMI1, evm_27.TU.AmTr_v1.0_scaffold00016.214 0.9088167550236093 13 AMTR_s00059p00212210 evm_27.TU.AmTr_v1.0_scaffold00059.248 0.9082529110879255 35 AMTR_s00175p00061780 Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis thaliana PTB3, evm_27.TU.AmTr_v1.0_scaffold00175.34 0.9082294530089091 15 AMTR_s00023p00210090 External stimuli response.biotic stress.pathogen-associated molecular pattern (PAMP).PTI (pattern-triggered immunity) network.fungal elicitor response.PBL27/RLCK185 kinase evm_27.TU.AmTr_v1.0_scaffold00023.153 0.9079748440489882 16 AMTR_s00106p00025830 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF3 mRNA-to-PIC binding complex.eIF3k component ATTIF3K1, TIF3K1, EIF3K, evm_27.TU.AmTr_v1.0_scaffold00106.7 0.9067007356622274 17 AMTR_s00102p00095780 Vesicle trafficking.clathrin coated vesicle (CCV) machinery.AP-2 cargo adaptor complex.AP1/2B large beta subunit evm_27.TU.AmTr_v1.0_scaffold00102.50 0.9064283980087673 50 AMTR_s00002p00225030 DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00002.247 0.9060090352981734 19 AMTR_s00114p00123360 evm_27.TU.AmTr_v1.0_scaffold00114.56 0.9047196949889507 20 AMTR_s00004p00166400 Protein degradation.peptidase families.cysteine-type peptidase activities.ubiquitin-specific protease UBP8, evm_27.TU.AmTr_v1.0_scaffold00004.183 0.9026109874797543 27 AMTR_s00101p00087960 Nucleotide metabolism.purines.phosphotransfers.guanylate kinase evm_27.TU.AmTr_v1.0_scaffold00101.64 0.9023432597115375 22 AMTR_s00048p00075850 RNA biosynthesis.transcriptional activation.HSF (heat shock) transcription factor HSFA1B, ATHSF3, HSF3, ATHSFA1B, evm_27.TU.AmTr_v1.0_scaffold00048.34 0.9020051056877805 23 AMTR_s00029p00106010 Pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.107 0.9015789034449277 24 AMTR_s00119p00124540 Protein translocation.mitochondrion.outer mitochondrion membrane TOM translocation system.Tom40 component TOM40, evm_27.TU.AmTr_v1.0_scaffold00119.97 0.9014702243828095 25 AMTR_s00020p00233960 Vesicle trafficking.target membrane tethering.TRAPP (Trafficking-Protein-Particle) complexes.TRAPP-I/II/III complex-shared components.BET3 component evm_27.TU.AmTr_v1.0_scaffold00020.105 0.9007815890112212 26 AMTR_s00012p00265130 Protein RETICULATA, chloroplastic OS=Arabidopsis thaliana LCD1, evm_27.TU.AmTr_v1.0_scaffold00012.368 0.8999836101375795 27 AMTR_s00071p00153630 Ran-binding protein M homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00071.142 0.899243150100539 50 AMTR_s00009p00218530 Protein biosynthesis.organelle translation machineries.mitochondrial ribosome.small subunit proteome.mtRPS9 component evm_27.TU.AmTr_v1.0_scaffold00009.156 0.8986280343224778 29 AMTR_s00027p00217440 evm_27.TU.AmTr_v1.0_scaffold00027.80 0.8985435469528772 34 AMTR_s00109p00054710 Solute transport.primary active transport.V-type ATPase complex.peripheral V1 subcomplex.subunit B evm_27.TU.AmTr_v1.0_scaffold00109.40 0.8985271120202087 34 AMTR_s00036p00225190 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.UAP56 helicase component evm_27.TU.AmTr_v1.0_scaffold00036.165 0.8983239911832853 40 AMTR_s00039p00212570 RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).core components.MAC3 component MAC3A, evm_27.TU.AmTr_v1.0_scaffold00039.183 0.8982686550896775 33 AMTR_s00001p00246890 evm_27.TU.AmTr_v1.0_scaffold00001.300 0.8979637468069813 34 AMTR_s00022p00213770 evm_27.TU.AmTr_v1.0_scaffold00022.253 0.8963018653725137 35 AMTR_s00046p00229090 evm_27.TU.AmTr_v1.0_scaffold00046.172 0.8962071872782024 36 AMTR_s00017p00083690 Peter Pan-like protein OS=Arabidopsis thaliana PPAN, evm_27.TU.AmTr_v1.0_scaffold00017.31 0.8954444367231135 38 AMTR_s00023p00230220 DNA topoisomerase 6 subunit A OS=Arabidopsis thaliana BIN5, RHL2, evm_27.TU.AmTr_v1.0_scaffold00023.183 0.8950165930262042 39 AMTR_s00016p00205550 evm_27.TU.AmTr_v1.0_scaffold00016.172 0.8933466274919675 40 AMTR_s00109p00033810 Vesicle trafficking.endomembrane trafficking.vacuolar sorting.AP-4 vacuole cargo adaptor complex.AP4B large beta subunit evm_27.TU.AmTr_v1.0_scaffold00109.22 0.891700122795787 41 AMTR_s00066p00145760 evm_27.TU.AmTr_v1.0_scaffold00066.147 0.8915051789908119 42 AMTR_s00019p00255470 Protein biosynthesis.translation elongation.eEF1B eEF1A-GDP-recycling complex.eEF1B-gamma component evm_27.TU.AmTr_v1.0_scaffold00019.442 0.8910282403849934 44 AMTR_s00071p00045940 Vesicle trafficking.Coat protein II (COPII) coatomer machinery.coat protein complex.Sec23/24 cargo adaptor subcomplex.Sec24 component ERMO2, SEC24A, evm_27.TU.AmTr_v1.0_scaffold00071.24 0.8908302789298542 45 AMTR_s00041p00081370 evm_27.TU.AmTr_v1.0_scaffold00041.48 0.8903597285886574 46 AMTR_s00045p00182070 DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00045.224 0.8891892826116299 48 AMTR_s00101p00134540 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.Imp4 assembly factor IMP4, evm_27.TU.AmTr_v1.0_scaffold00101.112 0.8891537192202076 49 AMTR_s00022p00147990 Cell wall.pectin.rhamnogalacturonan II.synthesis.2-keto-3-deoxymanno-octulosonic acid (KDO) synthesis.CMP-KDO synthetase KDSB, evm_27.TU.AmTr_v1.0_scaffold00022.144 0.8885730467915249 50 AMTR_s00091p00066640 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL19 component evm_27.TU.AmTr_v1.0_scaffold00091.17 0.8878940068995067 52 AMTR_s00001p00245330 DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sativa subsp. japonica RH1, ATRH1, evm_27.TU.AmTr_v1.0_scaffold00001.292 0.8869220855995945 53 AMTR_s00056p00180950 Protein modification.peptide maturation.mitochondrion.MPP mitochondrial signal peptidase heterodimer.alpha subunit evm_27.TU.AmTr_v1.0_scaffold00056.160 0.8867441962589503 54 AMTR_s00041p00192380 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-type E3 ligase evm_27.TU.AmTr_v1.0_scaffold00041.165 0.8867248500074177 55 AMTR_s00111p00056660 Enzyme classification.EC_1 oxidoreductases.EC_1.3 oxidoreductase acting on CH-CH group of donor evm_27.TU.AmTr_v1.0_scaffold00111.28 0.8865858748802874 56 AMTR_s00066p00115140 Protein biosynthesis.aminoacyl-tRNA synthetase activities.tryptophan-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00066.107 0.8844703748193162 57 AMTR_s00059p00183080 Chromatin organisation.histone chaperone activities.NASP-type histone chaperone evm_27.TU.AmTr_v1.0_scaffold00059.197 0.8842612446187667 58 AMTR_s00001p00273100 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst CYP40, SQN, evm_27.TU.AmTr_v1.0_scaffold00001.594 0.8842188960436295 59 AMTR_s00123p00060730 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPP Fe-Zn-dependent phosphatase families.PP2A phosphatase complexes.B1-type regulatory component ATB' GAMMA, evm_27.TU.AmTr_v1.0_scaffold00123.4 0.8834565259102718 60 AMTR_s00110p00064100 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.NOB1 endonuclease evm_27.TU.AmTr_v1.0_scaffold00110.28 0.881098463776905 65 AMTR_s00082p00169320 RNA biosynthesis.transcriptional activation.GeBP transcription factor evm_27.TU.AmTr_v1.0_scaffold00082.40 0.8808839338193886 66 AMTR_s00067p00020220 Protein root UVB sensitive 2, chloroplastic OS=Arabidopsis thaliana RUS2, WXR1, evm_27.TU.AmTr_v1.0_scaffold00067.5 0.8805762358764881 67 AMTR_s00057p00218370 Vesicle trafficking.autophagosome formation.ATG8/ATG12 conjugation system.ATG4 ATG8-maturation peptidase evm_27.TU.AmTr_v1.0_scaffold00057.280 0.8805221544745366 68 AMTR_s00021p00164610 Solute transport.carrier-mediated transport.CDF superfamily.CaCA family.cation exchanger (NCL/EF-CAX-type) evm_27.TU.AmTr_v1.0_scaffold00021.119 0.8795644067208331 69 AMTR_s00096p00019400 Pentatricopeptide repeat-containing protein At5g11310, mitochondrial OS=Arabidopsis thaliana 0.8792524593401508 70 AMTR_s00011p00262800 RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.SAWADEE transcription factor evm_27.TU.AmTr_v1.0_scaffold00011.199 0.8791142517397542 71 AMTR_s00019p00154740 RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Prp43 RNA helicase evm_27.TU.AmTr_v1.0_scaffold00019.144 0.8789174626005876 72 AMTR_s00009p00247290 Phytohormones.jasmonic acid.synthesis.acyl-CoA thioesterase evm_27.TU.AmTr_v1.0_scaffold00009.243 0.8788155539354606 75 AMTR_s00009p00263810 Acyl-CoA-binding domain-containing protein 2 OS=Arabidopsis thaliana ACBP2, evm_27.TU.AmTr_v1.0_scaffold00009.362 0.8784926753722826 74 AMTR_s00029p00103360 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).PRP40C pre-mRNA-processing protein ATPRP40C, PRP40C, evm_27.TU.AmTr_v1.0_scaffold00029.100 0.8781224198270071 76 AMTR_s00039p00228400 evm_27.TU.AmTr_v1.0_scaffold00039.211 0.878038434235059 77 AMTR_s00024p00115620 Transmembrane 9 superfamily member 2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00024.65 0.8776087083542295 78 AMTR_s00066p00171460 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF2 Met-tRNA binding factor complex.eIF2-beta component EIF2 BETA, EMB1401, evm_27.TU.AmTr_v1.0_scaffold00066.200 0.877206634804753 79 AMTR_s00057p00205760 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN3 regulatory component HAP15, EMB2719, evm_27.TU.AmTr_v1.0_scaffold00057.246 0.8768872259836704 80 AMTR_s00101p00151570 Protein biosynthesis.organelle translation machineries.mitochondrial ribosome.large subunit proteome.mtRPL4 component evm_27.TU.AmTr_v1.0_scaffold00101.126 0.8766619263303722 82 AMTR_s00002p00260390 evm_27.TU.AmTr_v1.0_scaffold00002.443 0.8758167902615566 83 AMTR_s01306p00008770 Protein modification.lipidation.Glycophosphatidylinositol (GPI)-anchor addition.GPI transamidase complex.GAA1 component evm_27.TU.AmTr_v1.0_scaffold01306.1 0.8754979213444077 84 AMTR_s00078p00100600 Solute transport.porins.VDAC voltage-gated anion channel ATVDAC1, VDAC1, evm_27.TU.AmTr_v1.0_scaffold00078.71 0.8748949361835873 88 AMTR_s00185p00050380 RNA biosynthesis.transcriptional activation.bZIP superfamily.bZIP transcription factor evm_27.TU.AmTr_v1.0_scaffold00185.20 0.872671835353327 93 AMTR_s00023p00113610 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).U2B snRNP component U2B'', evm_27.TU.AmTr_v1.0_scaffold00023.58 0.8725223343941517 95 AMTR_s00051p00090280 Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00051.36 0.8723337876149282 96 AMTR_s00046p00091860 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group.NST nucleotide sugar transporter evm_27.TU.AmTr_v1.0_scaffold00046.48 0.8720094151584292 97