Sequence Description Alias PCC hrr AMTR_s00059p00193620 Cell cycle.interphase.DNA replication.preinitiation.TOP1 DNA topoisomerase MGO1, TOP1, TOP1ALPHA, evm_27.TU.AmTr_v1.0_scaffold00059.214 0.9544162570033162 3 AMTR_s00020p00234520 Protein degradation.peptidase families.cysteine-type peptidase activities.ubiquitin-specific protease ATUBP5, UBP5, PDE323, evm_27.TU.AmTr_v1.0_scaffold00020.106 0.9485713732796728 6 AMTR_s00014p00034060 Cell wall.callose.callose synthase GSL04, atgsl4, gsl04, ATGSL04, evm_27.TU.AmTr_v1.0_scaffold00014.10 0.9485422794263493 6 AMTR_s00004p00118340 evm_27.TU.AmTr_v1.0_scaffold00004.101 0.9470553915833996 4 AMTR_s00142p00102260 Protein modification.acetylation.NatA-type N-terminal acetylase complex.NAA15 auxiliary component EMB2753, evm_27.TU.AmTr_v1.0_scaffold00142.67 0.9463719408987464 18 AMTR_s00029p00211750 RNA processing.organelle machineries.RNA modification.tRNA adenine deamination.chloroplast-tRNA adenosine deaminase TADA, ATTADA, evm_27.TU.AmTr_v1.0_scaffold00029.309 0.9444845282799464 6 AMTR_s00033p00216940 Solute transport.carrier-mediated transport.DMT superfamily.CLT glutathione transporter CLT2, evm_27.TU.AmTr_v1.0_scaffold00033.192 0.9444729106339956 7 AMTR_s00131p00071060 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.PDS phytoene desaturase PDS3, PDS, PDE226, evm_27.TU.AmTr_v1.0_scaffold00131.42 0.9439057731028102 8 AMTR_s00080p00074320 Pentatricopeptide repeat-containing protein At4g26680, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00080.23 0.9436821281294973 9 AMTR_s00099p00147110 EMB140, evm_27.TU.AmTr_v1.0_scaffold00099.133 0.943254177414034 10 AMTR_s00070p00097310 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.transsulfuration pathway.cystathionine beta-lyase CBL, evm_27.TU.AmTr_v1.0_scaffold00070.48 0.9425810330967884 11 AMTR_s00045p00068210 RNA processing.RNA modification.rRNA/tRNA methylation.TRM7-TRM732/TRM734 tRNA cytidine/guanosine-methyltransferase complex.TRM734 component evm_27.TU.AmTr_v1.0_scaffold00045.55 0.9425285961490825 59 AMTR_s00110p00154620 Probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic OS=Arabidopsis thaliana emb2458, evm_27.TU.AmTr_v1.0_scaffold00110.130 0.9420617083567837 13 AMTR_s00009p00184050 Protein modification.ADP-ribosylation.poly(ADP-ribose) polymerase (PARP) ATPARP2, PARP2, evm_27.TU.AmTr_v1.0_scaffold00009.114 0.9417863183782196 14 AMTR_s00055p00196140 Putative DUF21 domain-containing protein At3g13070, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00055.133 0.9417626563970394 15 AMTR_s00056p00185560 RNA processing.organelle machineries.RNA editing.plastidial RNA editing.ECB2/VAC1 RNA editing factor VAC1, ECB2, ATECB2 0.9414156003193921 16 AMTR_s00021p00172560 Apoptosis inhibitor 5-like protein API5 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00021.126 0.9413002213730407 17 AMTR_s00029p00206820 RNA processing.RNA decay.exosome complex.associated co-factors.SUPERKILLER (SKI) regulation complex.SKI2 RNA helicase component evm_27.TU.AmTr_v1.0_scaffold00029.298 0.9406494021051176 18 AMTR_s00034p00235670 Cell cycle.organelle machineries.DNA replication.DNA gyrase complex.subunit B GYRB1, evm_27.TU.AmTr_v1.0_scaffold00034.119 0.9403674046026108 19 AMTR_s00085p00139780 Chromatin organisation.DNA methylation.canonical RNA-directed DNA methylation pathway.MORC-type auxilary factor evm_27.TU.AmTr_v1.0_scaffold00085.89 0.9398018476494531 24 AMTR_s00033p00135980 Protein biosynthesis.aminoacyl-tRNA synthetase activities.aspartate-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00033.71 0.9394857298712548 21 AMTR_s00045p00168580 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.class I/Ez histone methyltransferase component SDG10, EZA1, SWN, evm_27.TU.AmTr_v1.0_scaffold00045.200 0.9393558765610188 22 AMTR_s00002p00268330 Enzyme classification.EC_3 hydrolases.EC_3.4 hydrolase acting on peptide bond (peptidase) evm_27.TU.AmTr_v1.0_scaffold00002.535 0.9386203624606135 36 AMTR_s00071p00175860 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic40 component TIC40, ATTIC40, PDE120, evm_27.TU.AmTr_v1.0_scaffold00071.178 0.9379258525508112 24 AMTR_s00017p00192140 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin establishment.PDS5 cohesin cofactor evm_27.TU.AmTr_v1.0_scaffold00017.112 0.9357461100123349 33 AMTR_s00003p00212560 emb1441, evm_27.TU.AmTr_v1.0_scaffold00003.204 0.9355216924060861 26 AMTR_s00003p00269470 evm_27.TU.AmTr_v1.0_scaffold00003.408 0.935143139537992 27 AMTR_s00013p00056780 MEI1, evm_27.TU.AmTr_v1.0_scaffold00013.20 0.9350793215007012 28 AMTR_s00147p00073200 evm_27.TU.AmTr_v1.0_scaffold00147.35 0.9340314486117197 29 AMTR_s00049p00011400 Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00049.2 0.9335815834969322 39 AMTR_s00110p00053630 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin loading.SCC2 adherin SCC2, ATSCC2, EMB2773, evm_27.TU.AmTr_v1.0_scaffold00110.24 0.9332552052434196 85 AMTR_s00110p00037960 Chromatin organisation.chromatin remodeling complexes.ATPase core components.SMARCAL1-like group.SMARCAL1 chromatin remodeling factor evm_27.TU.AmTr_v1.0_scaffold00110.12 0.9329833102316198 90 AMTR_s00133p00115730 Probable acyl-activating enzyme 18, peroxisomal OS=Arabidopsis thaliana AAE18, evm_27.TU.AmTr_v1.0_scaffold00133.60 0.932549887861421 33 AMTR_s00032p00063530 evm_27.TU.AmTr_v1.0_scaffold00032.40 0.9324573069138838 39 AMTR_s00197p00040880 Pentatricopeptide repeat-containing protein At2g30780 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00197.21 0.9323960015157414 35 AMTR_s00016p00180540 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT2 component evm_27.TU.AmTr_v1.0_scaffold00016.142 0.9323727616138031 36 AMTR_s00058p00177950 evm_27.TU.AmTr_v1.0_scaffold00058.168 0.9321081638417109 54 AMTR_s00049p00194600 evm_27.TU.AmTr_v1.0_scaffold00049.205 0.9317712468542606 38 AMTR_s00004p00267320 Vesicle trafficking.target membrane tethering.DSL1 (Depends-on-SLY1) complex.MIP2 component evm_27.TU.AmTr_v1.0_scaffold00004.268 0.9316213244278213 39 AMTR_s00086p00165640 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Chd3/Mi-2 chromatin remodeling factor PKL, GYM, CHR6, SSL2, CHD3, evm_27.TU.AmTr_v1.0_scaffold00086.104 0.9313762222672018 40 AMTR_s00002p00269010 evm_27.TU.AmTr_v1.0_scaffold00002.545 0.9304358327116476 41 AMTR_s00025p00031700 RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.NDX transcription factor evm_27.TU.AmTr_v1.0_scaffold00025.12 0.9301737695436497 47 AMTR_s00071p00100010 Protein biosynthesis.aminoacyl-tRNA synthetase activities.histidine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00071.77 0.9293262868165714 43 AMTR_s00058p00185710 evm_27.TU.AmTr_v1.0_scaffold00058.180 0.9292989688214249 44 AMTR_s00010p00241770 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.plastidial glucanotransferase DPE1, evm_27.TU.AmTr_v1.0_scaffold00010.311 0.9288312495219948 74 AMTR_s00106p00098180 evm_27.TU.AmTr_v1.0_scaffold00106.68 0.9288012168111008 52 AMTR_s00077p00115750 Chromatin organisation.chromatin remodeling complexes.ATPase core components.SSO1653-like group.SHPRH chromatin remodeling factor evm_27.TU.AmTr_v1.0_scaffold00077.105 0.9286076841564518 70 AMTR_s00063p00142620 evm_27.TU.AmTr_v1.0_scaffold00063.36 0.9274489074926486 48 AMTR_s00024p00121650 Protein modification.phosphorylation.CMGC kinase superfamily.DYRK kinase evm_27.TU.AmTr_v1.0_scaffold00024.71 0.9272638839164015 49 AMTR_s00047p00175730 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UTP2/NOP14 assembly factor evm_27.TU.AmTr_v1.0_scaffold00047.99 0.9270244053496305 50 AMTR_s00058p00123890 evm_27.TU.AmTr_v1.0_scaffold00058.86 0.9268102777620669 51 AMTR_s00049p00226280 Chloroplast sensor kinase, chloroplastic OS=Arabidopsis thaliana CSK, evm_27.TU.AmTr_v1.0_scaffold00049.272 0.9266858692827333 52 AMTR_s00004p00115360 DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00004.98 0.9265641322843525 94 AMTR_s00009p00261910 Probable DEAD-box ATP-dependent RNA helicase 48 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00009.342 0.9265348421355988 54 AMTR_s00058p00101170 Protein biosynthesis.aminoacyl-tRNA synthetase activities.methionine-tRNA ligase OVA1, evm_27.TU.AmTr_v1.0_scaffold00058.56 0.9261724519176645 55 AMTR_s00048p00132600 Pentatricopeptide repeat-containing protein At5g27270 OS=Arabidopsis thaliana EMB976, evm_27.TU.AmTr_v1.0_scaffold00048.78 0.9261536947978689 56 AMTR_s00066p00163770 ELF9, evm_27.TU.AmTr_v1.0_scaffold00066.177 0.9260234002273453 57 AMTR_s00079p00107040 CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays EMB1865, evm_27.TU.AmTr_v1.0_scaffold00079.39 0.9258068058915946 58 AMTR_s00016p00133200 evm_27.TU.AmTr_v1.0_scaffold00016.91 0.9255327671819171 59 AMTR_s00022p00244130 Outer envelope protein 80, chloroplastic OS=Arabidopsis thaliana OEP80, EMB213, TOC75, ATOEP80, evm_27.TU.AmTr_v1.0_scaffold00022.358 0.9248857677107157 60 AMTR_s00002p00271990 evm_27.TU.AmTr_v1.0_scaffold00002.653 0.9247865204061311 94 AMTR_s00049p00223290 Putative pentatricopeptide repeat-containing protein At3g47840 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00049.264 0.9238062525957953 62 AMTR_s00092p00069380 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP5/TAC12 component PTAC12, HMR, evm_27.TU.AmTr_v1.0_scaffold00092.35 0.9235809694136863 63 AMTR_s00040p00198390 Calmodulin-interacting protein 111 OS=Arabidopsis thaliana CIP111, evm_27.TU.AmTr_v1.0_scaffold00040.199 0.9234310193833994 64 AMTR_s00017p00239150 Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana MAA3, evm_27.TU.AmTr_v1.0_scaffold00017.210 0.9232170509052108 67 AMTR_s00061p00066220 Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00061.41 0.9225862002823472 66 AMTR_s00008p00268620 Cell cycle.mitosis and meiosis.sister chromatid separation.spindle assembly checkpoint machinery.RAD17 checkpoint protein evm_27.TU.AmTr_v1.0_scaffold00008.241 0.9224482693186609 67 AMTR_s00058p00140100 Carbohydrate metabolism.starch metabolism.degradation.maltose metabolism.cytosolic alpha-glucan phosphorylase PHS2, ATPHS2, evm_27.TU.AmTr_v1.0_scaffold00058.104 0.9223253729900737 68 AMTR_s00085p00089520 Chromatin organisation.chromatin remodeling complexes.SWR1 complex.PIE1 ATPase component SRCAP, PIE1, chr13, evm_27.TU.AmTr_v1.0_scaffold00085.48 0.9221276961664118 69 AMTR_s00029p00198530 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.SMC3/TTN7 component TTN7, SMC3, evm_27.TU.AmTr_v1.0_scaffold00029.274 0.9219261849426947 70 AMTR_s00032p00225290 evm_27.TU.AmTr_v1.0_scaffold00032.241 0.9218563364792124 71 AMTR_s00062p00102370 Cell cycle.organelle machineries.DNA replication.DNA polymerase POP POLGAMMA2, evm_27.TU.AmTr_v1.0_scaffold00062.75 0.9215603968443664 72 AMTR_s00036p00170130 Nudix hydrolase 3 OS=Arabidopsis thaliana atnudt3, NUDT3, evm_27.TU.AmTr_v1.0_scaffold00036.84 0.9215167413302281 73 AMTR_s00155p00075220 evm_27.TU.AmTr_v1.0_scaffold00155.49 0.9214757853801342 74 AMTR_s00055p00041510 Histidine kinase 1 OS=Arabidopsis thaliana AHK1, HK1, ATHK1, evm_27.TU.AmTr_v1.0_scaffold00055.12 0.9211367578713594 97 AMTR_s00028p00237040 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00028.124 0.9208304231009676 76 AMTR_s00087p00144100 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00087.47 0.9208005811450282 77 AMTR_s00058p00120430 evm_27.TU.AmTr_v1.0_scaffold00058.82 0.9207302958122885 95 AMTR_s00052p00118920 Carbon catabolite repressor protein 4 homolog 6 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00052.39 0.9206778725562641 79 AMTR_s00011p00265800 Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidopsis thaliana EMB1270, evm_27.TU.AmTr_v1.0_scaffold00011.222 0.9202968728344251 80 AMTR_s00029p00147240 Pentatricopeptide repeat-containing protein At2g17140 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.173 0.919774937599606 82 AMTR_s00025p00243690 Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase evm_27.TU.AmTr_v1.0_scaffold00025.377 0.9197576564245001 83 AMTR_s00023p00028640 SNF2 domain-containing protein CLASSY 2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00023.6 0.9194088544435939 86 AMTR_s00046p00164820 Protein modification.acetylation.NatC-type N-terminal acetylase complex.NAA35 auxiliary component ATMAK10, MAK10, evm_27.TU.AmTr_v1.0_scaffold00046.88 0.9191698236883653 87 AMTR_s00045p00176400 Probable glutamyl endopeptidase, chloroplastic OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00045.212 0.919043208320125 88 AMTR_s00110p00073830 RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Prp2 RNA helicase ESP3, EMB2733, evm_27.TU.AmTr_v1.0_scaffold00110.39 0.9190166964248792 89 AMTR_s00053p00190690 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Swr1-like group.Ino80 chromatin remodeling factor ATINO80, INO80, evm_27.TU.AmTr_v1.0_scaffold00053.139 0.918618306488872 90 AMTR_s00056p00172610 Endoribonuclease YBEY, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00056.150 0.9182512664156817 93 AMTR_s00062p00195710 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH12 component FTSH12, EMB36, EMB156, EMB1047, evm_27.TU.AmTr_v1.0_scaffold00062.205 0.9181299360017628 94 AMTR_s00036p00162680 ATP-dependent DNA helicase SRS2-like protein At4g25120 OS=Arabidopsis thaliana SRS2, ATSRS2, evm_27.TU.AmTr_v1.0_scaffold00036.78 0.9180067780266549 96 AMTR_s00069p00133460 Suppressor of mec-8 and unc-52 protein homolog 1 OS=Arabidopsis thaliana SMU1, evm_27.TU.AmTr_v1.0_scaffold00069.97 0.9179274747860277 97 AMTR_s00003p00075520 Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GUN1, evm_27.TU.AmTr_v1.0_scaffold00003.43 0.9173467956283284 98 AMTR_s00029p00248990 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.SF3B2 component evm_27.TU.AmTr_v1.0_scaffold00029.453 0.9172758051382084 99 AMTR_s00063p00087380 Chromatin organisation.chromatin remodeling complexes.ATPase core components.SSO1653-like group.SHPRH chromatin remodeling factor evm_27.TU.AmTr_v1.0_scaffold00063.12 0.9172578518015059 100