Sequence Description Alias PCC hrr AMTR_s00061p00120110 Carbohydrate metabolism.starch metabolism.synthesis.ADP-glucose pyrophosphorylase ADG1, APS1, evm_27.TU.AmTr_v1.0_scaffold00061.96 0.9258523587500056 4 AMTR_s00016p00219550 evm_27.TU.AmTr_v1.0_scaffold00016.199 0.9147586607697249 5 AMTR_s00066p00198600 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.VIPP protein PTAC4, VIPP1, evm_27.TU.AmTr_v1.0_scaffold00066.264 0.9142999547537672 22 AMTR_s00068p00029180 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.ZDS zeta-carotene desaturase PDE181, ZDS, SPC1, evm_27.TU.AmTr_v1.0_scaffold00068.6 0.9113012950024043 47 AMTR_s00122p00077720 Photosynthesis.photorespiration.glycerate kinase evm_27.TU.AmTr_v1.0_scaffold00122.28 0.9081365631062731 23 AMTR_s00002p00254720 Solute transport.channels.CorA family.MRS/MGT metal cation transporter MGT10, GMN10, MRS2-11, ATMGT10, evm_27.TU.AmTr_v1.0_scaffold00002.387 0.9078911029239225 16 AMTR_s00040p00188540 Carbohydrate metabolism.starch metabolism.synthesis.starch branching enzyme SBE2.2, evm_27.TU.AmTr_v1.0_scaffold00040.184 0.9070349743029922 13 AMTR_s00048p00138430 Solute transport.carrier-mediated transport.PLGG1 glycerate:glycolate transporter evm_27.TU.AmTr_v1.0_scaffold00048.86 0.9039595073083886 8 AMTR_s00044p00143330 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.LPA3 protein LPA3, evm_27.TU.AmTr_v1.0_scaffold00044.141 0.9014174017182113 48 AMTR_s00031p00115090 evm_27.TU.AmTr_v1.0_scaffold00031.51 0.9010959244734801 19 AMTR_s00109p00097700 Malonate--CoA ligase OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00109.85 0.8994488965128371 11 AMTR_s00058p00193720 Protein modification.dephosphorylation.tyrosine protein phosphatase (PTP) superfamily.dual-specificity phosphatase families.LSF phosphoglucan phosphatase LSF1, evm_27.TU.AmTr_v1.0_scaffold00058.193 0.8988926545174941 26 AMTR_s00033p00159870 Uncharacterized methyltransferase At2g41040, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00033.105 0.8967161262634276 13 AMTR_s00078p00073300 evm_27.TU.AmTr_v1.0_scaffold00078.44 0.8966741200801532 16 AMTR_s00103p00115980 Protein TAB2 homolog, chloroplastic OS=Arabidopsis thaliana ATAB2, evm_27.TU.AmTr_v1.0_scaffold00103.69 0.8960141384947024 36 AMTR_s00021p00151130 evm_27.TU.AmTr_v1.0_scaffold00021.107 0.8953347623386462 50 AMTR_s00109p00030850 evm_27.TU.AmTr_v1.0_scaffold00109.17 0.8951915690655323 17 AMTR_s00057p00143260 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease DEGP2, evm_27.TU.AmTr_v1.0_scaffold00057.128 0.8935916780962752 48 AMTR_s00029p00107920 evm_27.TU.AmTr_v1.0_scaffold00029.111 0.8925105478488926 19 AMTR_s00117p00114400 Probable acyl-activating enzyme 16, chloroplastic OS=Arabidopsis thaliana AAE15, evm_27.TU.AmTr_v1.0_scaffold00117.48 0.890017811706871 40 AMTR_s00009p00265580 DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00009.383 0.8895558774887574 62 AMTR_s00030p00041970 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor EMB2219, evm_27.TU.AmTr_v1.0_scaffold00030.14 0.8893556432669496 88 AMTR_s00077p00156540 Serotonin N-acetyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica ATNSI, NSI, evm_27.TU.AmTr_v1.0_scaffold00077.160 0.8890888778834023 32 AMTR_s00065p00022170 RNA biosynthesis.organelle machineries.RNA polymerase activities.nuclear-encoded organellar RNA polymerase (NEP) PDE319, SCA3, evm_27.TU.AmTr_v1.0_scaffold00065.7 0.8876357436822767 74 AMTR_s00040p00143220 Protein degradation.peptidase families.metallopeptidase activities.aminopeptidase activities.M18 aspartyl aminopeptidase (DAP) evm_27.TU.AmTr_v1.0_scaffold00040.110 0.8871126341611627 31 AMTR_s00109p00098140 Lipid metabolism.fatty acid synthesis.mitochondrial Type II fatty acid synthase (mtFAS) system.malonyl-CoA synthetase (mtMCS) evm_27.TU.AmTr_v1.0_scaffold00109.86 0.8862603442315312 31 AMTR_s00014p00133450 Bifunctional nuclease 1 OS=Arabidopsis thaliana BBD1, ATBBD1, evm_27.TU.AmTr_v1.0_scaffold00014.49 0.886138649750817 27 AMTR_s00175p00057810 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.4-hydroxy-3-methylbut-2-enyl diphosphate synthase CSB3, CLB4, GCPE, HDS, ISPG, evm_27.TU.AmTr_v1.0_scaffold00175.30 0.8854705841939304 50 AMTR_s00016p00187060 Amino acid metabolism.biosynthesis.shikimate family.shikimate pathway.shikimate kinase ATSKL1, SKL1, evm_27.TU.AmTr_v1.0_scaffold00016.149 0.8843796995663814 38 AMTR_s00115p00062270 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.Y3IP1 protein AtCEST, CEST, evm_27.TU.AmTr_v1.0_scaffold00115.3 0.8828491556689918 30 AMTR_s00001p00178450 Protein modification.disulfide bond formation.chloroplast.thiol-disulfide oxidoreductase (LTO1) evm_27.TU.AmTr_v1.0_scaffold00001.171 0.8808497893451327 31 AMTR_s00069p00176780 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen CYP704A2, evm_27.TU.AmTr_v1.0_scaffold00069.157 0.879862241250971 57 AMTR_s00024p00078360 65-kDa microtubule-associated protein 6 OS=Arabidopsis thaliana ATMAP65-6, MAP65-6, evm_27.TU.AmTr_v1.0_scaffold00024.38 0.8771577465619486 36 AMTR_s00101p00064110 Lipid metabolism.galactolipid and sulfolipid synthesis.UDP-sulfoquinovose synthase SQD1, evm_27.TU.AmTr_v1.0_scaffold00101.37 0.875364637115213 95 AMTR_s00031p00027380 Cell cycle.organelle machineries.organelle fission.plastid division.FtsZ prokaryotic-tubulin filaments.FtsZ2 component FTSZ2-2, evm_27.TU.AmTr_v1.0_scaffold00031.4 0.8751903795581623 39 AMTR_s00048p00155800 Probable GTP diphosphokinase RSH3, chloroplastic OS=Arabidopsis thaliana RSH3, AT-RSH3, ATRSH3, evm_27.TU.AmTr_v1.0_scaffold00048.111 0.874998325060823 42 AMTR_s00024p00220620 Protein translocation.peroxisome.importomer translocation system.receptor polyubiquitination system.Pex10 component ATPEX10, PEX10, evm_27.TU.AmTr_v1.0_scaffold00024.216 0.87487211271516 41 AMTR_s00109p00032070 evm_27.TU.AmTr_v1.0_scaffold00109.19 0.8734389124474311 42 AMTR_s00061p00061380 Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00061.36 0.8717584183562256 44 AMTR_s00099p00159350 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll breakdown.chlorophyll dephytylase (CLD) evm_27.TU.AmTr_v1.0_scaffold00099.158 0.8715344304192804 94 AMTR_s00001p00272280 Vesicle trafficking.autophagosome formation.ATG1-13 autophagosome assembly control complex.ATG1 kinase component evm_27.TU.AmTr_v1.0_scaffold00001.512 0.8714605612679626 59 AMTR_s00001p00048980 Carbohydrate metabolism.starch metabolism.synthesis.starch branching enzyme SBE2.2, evm_27.TU.AmTr_v1.0_scaffold00001.28 0.8706903856383184 48 AMTR_s00066p00057600 Protein modification.dephosphorylation.aspartate-based protein phosphatase superfamily.CIN phosphatase PGLP1, ATPGLP1, evm_27.TU.AmTr_v1.0_scaffold00066.32 0.869611709851528 49 AMTR_s00007p00267680 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp60 family.Hsp20 Hsp60-co-chaperone CPN21, ATCPN21, CHCPN10, CPN10, CPN20, evm_27.TU.AmTr_v1.0_scaffold00007.383 0.8693372356796829 50 AMTR_s00033p00183310 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC17 component PTAC17, evm_27.TU.AmTr_v1.0_scaffold00033.135 0.868151292903773 52 AMTR_s00078p00035540 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.ascorbate peroxidase (APX) APX6, evm_27.TU.AmTr_v1.0_scaffold00078.14 0.8678913777297866 53 AMTR_s00112p00013030 evm_27.TU.AmTr_v1.0_scaffold00112.1 0.8673938766071831 54 AMTR_s00022p00127970 evm_27.TU.AmTr_v1.0_scaffold00022.120 0.86735204899418 55 AMTR_s00077p00053020 Reticulon-like protein B16 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00077.30 0.8668676936089308 56 AMTR_s00002p00241480 Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.307 0.86573618483703 58 AMTR_s00038p00207680 Probable pectin methyltransferase QUA2 OS=Arabidopsis thaliana OSU1, QUA2, TSD2, evm_27.TU.AmTr_v1.0_scaffold00038.161 0.865579551780112 78 AMTR_s00171p00047960 evm_27.TU.AmTr_v1.0_scaffold00171.29 0.8648632039585451 82 AMTR_s00068p00072270 Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00068.29 0.864704921045858 62 AMTR_s00056p00141960 evm_27.TU.AmTr_v1.0_scaffold00056.116 0.8645451434470015 63 AMTR_s00049p00119540 Redox homeostasis.chloroplast redox homeostasis.F-type thioredoxin ATF1, TRXF1, evm_27.TU.AmTr_v1.0_scaffold00049.94 0.8609171887429033 86 AMTR_s00023p00186390 External stimuli response.light.UV-A/blue light.phototropin-mediated photoperception.phototropin photoreceptor RPT1, PHOT1, NPH1, JK224, evm_27.TU.AmTr_v1.0_scaffold00023.124 0.8603848278536629 88 AMTR_s00109p00036750 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.chlorophyll b reductase complex.NYC1 component NYC1, evm_27.TU.AmTr_v1.0_scaffold00109.25 0.8602991958539133 72 AMTR_s00001p00133790 evm_27.TU.AmTr_v1.0_scaffold00001.111 0.859150824867655 73 AMTR_s00055p00209070 RNA biosynthesis.transcriptional activation.Trihelix transcription factor GT-1, evm_27.TU.AmTr_v1.0_scaffold00055.148 0.8590490642312839 74 AMTR_s00092p00119050 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease HHOA, DEG5, DEGP5, evm_27.TU.AmTr_v1.0_scaffold00092.82 0.8579313314862071 97 AMTR_s00001p00069110 Pentatricopeptide repeat-containing protein At5g42310, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00001.44 0.8575786192707087 78 AMTR_s00027p00238010 evm_27.TU.AmTr_v1.0_scaffold00027.133 0.8556287720922375 83 AMTR_s00006p00263990 evm_27.TU.AmTr_v1.0_scaffold00006.263 0.8545160353286756 88 AMTR_s00167p00056240 Lipid metabolism.lipid degradation.triacylglycerol lipase activities.diacyl-/triacylglycerol lipase activities.LIP-type lipase ATLIP1, LIP1, evm_27.TU.AmTr_v1.0_scaffold00167.23 0.8544419039257249 90 AMTR_s00017p00186830 evm_27.TU.AmTr_v1.0_scaffold00017.106 0.8543568858927086 91 AMTR_s00019p00233430 Redox homeostasis.low-molecular-weight scavengers.tocopherol biosynthesis.homogentisate phytyltransferase (VTE2/HPT) HPT1, ATHPT, TPT1, VTE2, evm_27.TU.AmTr_v1.0_scaffold00019.323 0.8536777229312801 95 AMTR_s00058p00188880 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease DEGP1, Deg1, evm_27.TU.AmTr_v1.0_scaffold00058.187 0.8532526123894448 97 AMTR_s00010p00256310 evm_27.TU.AmTr_v1.0_scaffold00010.391 0.8518657246030792 99