Sequence Description Alias PCC hrr AMTR_s00031p00204460 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.cpSRP54 component 54CP, SRP54CP, CPSRP54, FFC, evm_27.TU.AmTr_v1.0_scaffold00031.99 0.9536466502780429 2 AMTR_s00017p00132450 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic110 component TIC110, ATTIC110, evm_27.TU.AmTr_v1.0_scaffold00017.54 0.9417944269404063 6 AMTR_s00070p00106620 DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00070.53 0.9391038873316219 3 AMTR_s00027p00142670 Pyridoxal reductase, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00027.43 0.9346237392088064 13 AMTR_s00049p00226280 Chloroplast sensor kinase, chloroplastic OS=Arabidopsis thaliana CSK, evm_27.TU.AmTr_v1.0_scaffold00049.272 0.9313292596730154 6 AMTR_s00047p00218860 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.FLN2 regulatory factor FLN2, evm_27.TU.AmTr_v1.0_scaffold00047.167 0.9303446658313974 9 AMTR_s00078p00161460 DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica RH39, evm_27.TU.AmTr_v1.0_scaffold00078.147 0.9295118815248672 9 AMTR_s00058p00101170 Protein biosynthesis.aminoacyl-tRNA synthetase activities.methionine-tRNA ligase OVA1, evm_27.TU.AmTr_v1.0_scaffold00058.56 0.9268140439804909 16 AMTR_s00009p00236210 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP11/MURE component MURE, PDE316, ATMURE, evm_27.TU.AmTr_v1.0_scaffold00009.196 0.9266175511969127 12 AMTR_s00010p00251120 evm_27.TU.AmTr_v1.0_scaffold00010.357 0.9255968392837273 10 AMTR_s00002p00236530 CDK5RAP1-like protein OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00002.279 0.92281772809658 26 AMTR_s00057p00143260 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease DEGP2, evm_27.TU.AmTr_v1.0_scaffold00057.128 0.921688482545086 12 AMTR_s00029p00193780 Fructokinase-like 1, chloroplastic OS=Arabidopsis thaliana FLN1, evm_27.TU.AmTr_v1.0_scaffold00029.262 0.9208029551861564 13 AMTR_s00022p00070510 Protein modification.peptide maturation.plastid.SPP stromal processing peptidase evm_27.TU.AmTr_v1.0_scaffold00022.51 0.9205652914648674 14 AMTR_s00002p00194810 Protein degradation.peptidase families.serine-type peptidase activities.chloroplast Clp-type protease complex.ClpR non-proteolytic core component CLPR4, evm_27.TU.AmTr_v1.0_scaffold00002.176 0.9193292338286204 15 AMTR_s00021p00196260 evm_27.TU.AmTr_v1.0_scaffold00021.159 0.9191081399845239 16 AMTR_s00068p00029180 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.ZDS zeta-carotene desaturase PDE181, ZDS, SPC1, evm_27.TU.AmTr_v1.0_scaffold00068.6 0.9181005985466859 29 AMTR_s00354p00009120 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP3/TAC10 component PTAC10, PDE312, evm_27.TU.AmTr_v1.0_scaffold00354.1 0.916301748811728 18 AMTR_s00028p00245370 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM2-type splicing factor ATCFM2, CFM2, evm_27.TU.AmTr_v1.0_scaffold00028.138 0.9151483103397127 35 AMTR_s00114p00128980 evm_27.TU.AmTr_v1.0_scaffold00114.59 0.9148048564877789 29 AMTR_s00049p00107230 evm_27.TU.AmTr_v1.0_scaffold00049.81 0.9137733981847594 43 AMTR_s00077p00167440 evm_27.TU.AmTr_v1.0_scaffold00077.179 0.9120277960290145 34 AMTR_s00126p00126070 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic22 component evm_27.TU.AmTr_v1.0_scaffold00126.65 0.9109938920607095 24 AMTR_s00066p00198600 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.VIPP protein PTAC4, VIPP1, evm_27.TU.AmTr_v1.0_scaffold00066.264 0.9109115112348848 25 AMTR_s00032p00226710 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.coproporphyrinogen III oxidase activities.HemF oxygen-dependent coproporphyrinogen III oxidase ATCPO-I, LIN2, HEMF1, evm_27.TU.AmTr_v1.0_scaffold00032.243 0.9106589805899706 26 AMTR_s00089p00093330 Protein biosynthesis.aminoacyl-tRNA synthetase activities.lysine-tRNA ligase OVA5, ATKRS-2, evm_27.TU.AmTr_v1.0_scaffold00089.48 0.9105767418268735 27 AMTR_s00068p00065660 evm_27.TU.AmTr_v1.0_scaffold00068.27 0.910220326259766 28 AMTR_s00031p00061040 Uncharacterized protein At5g03900, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00031.26 0.9095956207103346 29 AMTR_s00058p00171240 evm_27.TU.AmTr_v1.0_scaffold00058.156 0.9087962813991117 70 AMTR_s00096p00107320 Coenzyme metabolism.phylloquinone synthesis.1,4-dihydroxy-2-naphthoyl-CoA synthase ECHID, DHNS, evm_27.TU.AmTr_v1.0_scaffold00096.66 0.908700958603773 31 AMTR_s00001p00138080 Ankyrin repeat domain-containing protein, chloroplastic OS=Arabidopsis thaliana EMB16, EMB2036, AKRP, evm_27.TU.AmTr_v1.0_scaffold00001.114 0.9085503631486641 32 AMTR_s00056p00047160 Probable inactive ATP-dependent zinc metalloprotease FTSHI 2, chloroplastic OS=Arabidopsis thaliana EMB2083, evm_27.TU.AmTr_v1.0_scaffold00056.29 0.908466525813752 33 AMTR_s00090p00120760 RNA processing.ribonuclease activities.RNase Z endoribonuclease CPZ, TRZ2, evm_27.TU.AmTr_v1.0_scaffold00090.59 0.9082338844674281 34 AMTR_s00136p00085920 Pentatricopeptide repeat-containing protein At1g10910, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00136.44 0.9060222793731407 54 AMTR_s00163p00031970 evm_27.TU.AmTr_v1.0_scaffold00163.9 0.9049790839276227 36 AMTR_s00002p00128010 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP9/FSD2 component FSD2, evm_27.TU.AmTr_v1.0_scaffold00002.85 0.9048358952473602 37 AMTR_s00040p00213060 Protein translocation.chloroplast.inner envelope TIC translocation system.TIC-20 complex.Tic100 component emb1211, evm_27.TU.AmTr_v1.0_scaffold00040.228 0.9047453741507279 78 AMTR_s00029p00114850 evm_27.TU.AmTr_v1.0_scaffold00029.125 0.9036524469054563 42 AMTR_s00071p00072250 Probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00071.42 0.9030131057101033 41 AMTR_s00153p00036670 Lipid metabolism.galactolipid and sulfolipid synthesis.plastidial UDP-glucose pyrophosphorylase UGP3, evm_27.TU.AmTr_v1.0_scaffold00153.14 0.901911957707289 42 AMTR_s00042p00221280 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen CYP97B3, evm_27.TU.AmTr_v1.0_scaffold00042.72 0.9016057371766776 68 AMTR_s00016p00206840 RNA processing.RNA modification.pseudouridylation.RluA-type RNA pseudouridine synthase evm_27.TU.AmTr_v1.0_scaffold00016.175 0.901565441067705 44 AMTR_s00175p00057810 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.4-hydroxy-3-methylbut-2-enyl diphosphate synthase CSB3, CLB4, GCPE, HDS, ISPG, evm_27.TU.AmTr_v1.0_scaffold00175.30 0.8998154139572384 45 AMTR_s00003p00257280 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00003.320 0.8994402645088755 64 AMTR_s00045p00116920 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecA1 component SECA1, AtcpSecA, AGY1, evm_27.TU.AmTr_v1.0_scaffold00045.113 0.8987011987713913 69 AMTR_s00045p00200960 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.LPA1 protein LPA1, evm_27.TU.AmTr_v1.0_scaffold00045.260 0.8985169118715696 48 AMTR_s00003p00129460 Putative GTP diphosphokinase RSH1, chloroplastic OS=Arabidopsis thaliana RSH1, ATRSH1, AT-RSH1, evm_27.TU.AmTr_v1.0_scaffold00003.96 0.8984684252687558 49 AMTR_s00109p00045690 Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00109.32 0.8982777705957814 50 AMTR_s00077p00156540 Serotonin N-acetyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica ATNSI, NSI, evm_27.TU.AmTr_v1.0_scaffold00077.160 0.8977526621444386 53 AMTR_s00011p00203340 GTPase ERA-like, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00011.71 0.8975410724220441 54 AMTR_s00017p00253090 Protein modification.acetylation.sirtuin-type lysine deacetylase SRT2, AtSRT2, evm_27.TU.AmTr_v1.0_scaffold00017.263 0.8974644184541141 56 AMTR_s00142p00090900 emb2410, evm_27.TU.AmTr_v1.0_scaffold00142.59 0.8968186586571226 57 AMTR_s00001p00080980 Amino acid metabolism.biosynthesis.glutamate family.histidine.ATP phosphoribosyl transferase HISN1B, ATATP-PRT2, ATP-PRT2, evm_27.TU.AmTr_v1.0_scaffold00001.55 0.8963558852178426 58 AMTR_s00050p00111180 Carbohydrate metabolism.starch metabolism.degradation.dephosphorylation.SEX4-type phosphoglucan phosphatase ATSEX4, ATPTPKIS1, DSP4, SEX4, evm_27.TU.AmTr_v1.0_scaffold00050.23 0.8949182740560524 59 AMTR_s00039p00224840 evm_27.TU.AmTr_v1.0_scaffold00039.204 0.8938081190379207 60 AMTR_s00123p00013920 Coenzyme metabolism.tetrapyrrol biosynthesis.uroporphyrinogen III formation.uroporphyrinogen III synthase ATDUF3, DUF3, HEMD, UROS, ATUROS, evm_27.TU.AmTr_v1.0_scaffold00123.1 0.8934990209443981 61 AMTR_s00069p00147710 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter NAP8, ATNAP8, evm_27.TU.AmTr_v1.0_scaffold00069.114 0.8928688610755875 90 AMTR_s00103p00115980 Protein TAB2 homolog, chloroplastic OS=Arabidopsis thaliana ATAB2, evm_27.TU.AmTr_v1.0_scaffold00103.69 0.8927845875798417 64 AMTR_s00090p00178540 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.ISE2 RNA helicase ISE2, PDE317, EMB25, evm_27.TU.AmTr_v1.0_scaffold00090.110 0.8926686291491809 84 AMTR_s00008p00166810 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.starch-debranching activities.isoamylase-type enzyme ATISA3, ISA3, evm_27.TU.AmTr_v1.0_scaffold00008.90 0.892556245239632 66 AMTR_s00006p00243670 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00006.123 0.8916855596769555 69 AMTR_s00058p00140100 Carbohydrate metabolism.starch metabolism.degradation.maltose metabolism.cytosolic alpha-glucan phosphorylase PHS2, ATPHS2, evm_27.TU.AmTr_v1.0_scaffold00058.104 0.8916201773800763 77 AMTR_s00028p00227970 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCB cytochrome b6 maturation system (system IV).CCB4 component CCB4, evm_27.TU.AmTr_v1.0_scaffold00028.110 0.8913560721443708 71 AMTR_s00002p00267110 Cell cycle.organelle machineries.DNA replication.single-stranded DNA (ssDNA) maintenance.OSB-type ssDNA-binding protein OSB1, evm_27.TU.AmTr_v1.0_scaffold00002.519 0.8907183982505574 72 AMTR_s00077p00105110 DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00077.90 0.8903035334019676 74 AMTR_s00016p00179140 Acyltransferase-like protein At1g54570, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00016.141 0.8896518947558038 75 AMTR_s00048p00155800 Probable GTP diphosphokinase RSH3, chloroplastic OS=Arabidopsis thaliana RSH3, AT-RSH3, ATRSH3, evm_27.TU.AmTr_v1.0_scaffold00048.111 0.8892095266228075 76 AMTR_s00062p00185880 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp60 family.Hsp60 protein CH-CPN60A, CPN60A, SLP, evm_27.TU.AmTr_v1.0_scaffold00062.184 0.8890573518918884 77 AMTR_s00004p00107700 Protein modification.peptide maturation.plastid.EGY protease EGY1, evm_27.TU.AmTr_v1.0_scaffold00004.86 0.888330651549654 82 AMTR_s00058p00181770 Protein EXECUTER 2, chloroplastic OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00058.172 0.8880804876607977 81 AMTR_s00053p00158610 Coenzyme metabolism.tetrahydrofolate synthesis.folyl-polyglutamate synthetase FPGS2, ATDFC, DFC, evm_27.TU.AmTr_v1.0_scaffold00053.107 0.8877711058781846 82 AMTR_s00003p00168720 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.RH3 basal splicing factor emb1138, evm_27.TU.AmTr_v1.0_scaffold00003.145 0.8876195406162438 99 AMTR_s00012p00204440 Lipid metabolism.lipid transport.plastidial lipid import.TGD lipid importer complex.TGD2 substrate binding component TGD2, evm_27.TU.AmTr_v1.0_scaffold00012.139 0.8873331590087171 85 AMTR_s00117p00114400 Probable acyl-activating enzyme 16, chloroplastic OS=Arabidopsis thaliana AAE15, evm_27.TU.AmTr_v1.0_scaffold00117.48 0.8868807197578346 86 AMTR_s00109p00113060 Redox homeostasis.low-molecular-weight scavengers.tocopherol biosynthesis.tocopherol cyclase (VTE1/TC) ATSDX1, VTE1, evm_27.TU.AmTr_v1.0_scaffold00109.111 0.8868292810577033 87 AMTR_s00053p00152680 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.CHL-D component V157, PDE166, ALB1, CHLD, ALB-1V, evm_27.TU.AmTr_v1.0_scaffold00053.100 0.8860493775615106 89 AMTR_s00038p00234220 Haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00038.234 0.8859173645460663 90 AMTR_s00077p00140050 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.assembly phase.NFS2 cysteine desulfurase component ATSUFS, CPNIFS, ATNFS2, SUFS, ATCPNIFS, evm_27.TU.AmTr_v1.0_scaffold00077.138 0.8856641507113173 91 AMTR_s00065p00038950 evm_27.TU.AmTr_v1.0_scaffold00065.17 0.8851660091299706 93 AMTR_s00121p00128060 Cell cycle.organelle machineries.organelle fission.plastid division.ARC5 dynamin-like protein DRP5B, ARC5, evm_27.TU.AmTr_v1.0_scaffold00121.36 0.8846642688131865 94 AMTR_s00023p00232870 Pentatricopeptide repeat-containing protein At5g02830, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00023.190 0.8842378847981069 95 AMTR_s00211p00029350 Probable ribosome-binding factor A, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00211.5 0.8840951396655332 96 AMTR_s00016p00252780 Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana 0.884057648385385 97 AMTR_s00133p00020030 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.Whirly-type splicing factor ATWHY1, WHY1, PTAC1, evm_27.TU.AmTr_v1.0_scaffold00133.2 0.883797537639995 99 AMTR_s00004p00095690 RNA processing.organelle machineries.ribonuclease activities.PNP polynucleotide phosphorylase RIF10, PNP, evm_27.TU.AmTr_v1.0_scaffold00004.78 0.883678389282855 100