Sequence Description Alias PCC hrr AMTR_s00044p00032580 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP4/FSD3 component FSD3, evm_27.TU.AmTr_v1.0_scaffold00044.9 0.9614650598545881 2 AMTR_s00013p00241300 evm_27.TU.AmTr_v1.0_scaffold00013.201 0.9388348314264272 4 AMTR_s00057p00182130 Acyl-CoA-binding domain-containing protein 6 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00057.193 0.9271317653459789 10 AMTR_s00100p00087410 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris evm_27.TU.AmTr_v1.0_scaffold00100.26 0.9231847452351412 7 AMTR_s00046p00228230 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL13 component emb1473, evm_27.TU.AmTr_v1.0_scaffold00046.169 0.921953566839548 32 AMTR_s00114p00128980 evm_27.TU.AmTr_v1.0_scaffold00114.59 0.921279388366313 21 AMTR_s00122p00097060 Solute transport.carrier-mediated transport.BART superfamily.BASS family.BAT 2-keto acid transporter evm_27.TU.AmTr_v1.0_scaffold00122.40 0.9209859803385961 17 AMTR_s00012p00255170 Enzyme classification.EC_2 transferases.EC_2.7 transferase transferring phosphorus-containing group evm_27.TU.AmTr_v1.0_scaffold00012.285 0.9175752052882753 8 AMTR_s00016p00225920 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst ATCYP20-2, CYP20-2, evm_27.TU.AmTr_v1.0_scaffold00016.208 0.9163311801573096 9 AMTR_s00061p00116100 Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00061.92 0.9132146324069905 10 AMTR_s00013p00039290 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL27 component RPL27, evm_27.TU.AmTr_v1.0_scaffold00013.7 0.9091061266089205 12 AMTR_s00009p00241540 RNA processing.organelle machineries.ribonuclease activities.RNase J endoribonuclease emb2746, evm_27.TU.AmTr_v1.0_scaffold00009.218 0.9090198772780682 30 AMTR_s00077p00031710 Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00077.15 0.9086600370129853 13 AMTR_s00109p00045690 Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00109.32 0.9018474679874766 43 AMTR_s00004p00110090 Protein modification.phosphorylation.TKL kinase superfamily.LRR-VI kinase families.LRR-VI-1 kinase evm_27.TU.AmTr_v1.0_scaffold00004.89 0.9012896633614103 63 AMTR_s00147p00104660 evm_27.TU.AmTr_v1.0_scaffold00147.61 0.9004640938354792 19 AMTR_s00071p00072250 Probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00071.42 0.9003421634269502 45 AMTR_s00040p00213060 Protein translocation.chloroplast.inner envelope TIC translocation system.TIC-20 complex.Tic100 component emb1211, evm_27.TU.AmTr_v1.0_scaffold00040.228 0.8983716917375342 93 AMTR_s00065p00129700 Enzyme classification.EC_2 transferases.EC_2.3 acyltransferase evm_27.TU.AmTr_v1.0_scaffold00065.84 0.8971331784607449 19 AMTR_s00006p00253660 Cell cycle.organelle machineries.DNA replication.type-Ia DNA topoisomerase evm_27.TU.AmTr_v1.0_scaffold00006.171 0.8966797372295816 59 AMTR_s00002p00244810 RNA processing.RNA modification.pseudouridylation.Pus10-type tRNA pseudouridine synthase evm_27.TU.AmTr_v1.0_scaffold00002.325 0.8930729325982195 28 AMTR_s00010p00055110 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psPSRP3 component evm_27.TU.AmTr_v1.0_scaffold00010.27 0.8925932897330247 51 AMTR_s00012p00255190 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase evm_27.TU.AmTr_v1.0_scaffold00012.286 0.8902520138466492 23 AMTR_s00085p00102880 Disease resistance protein RPM1 OS=Arabidopsis thaliana RPP13, evm_27.TU.AmTr_v1.0_scaffold00085.63 0.8889905292382202 35 AMTR_s00065p00129790 Lecithin-cholesterol acyltransferase-like 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00065.85 0.8874679657844522 25 AMTR_s00106p00119930 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp60 family.Hsp60 protein CPN60B, LEN1, evm_27.TU.AmTr_v1.0_scaffold00106.91 0.8874138813571442 26 AMTR_s00033p00066570 RNA processing.RNA splicing.DBR1 intron-lariat-RNA degrading enzyme ATDBR1, DBR1, evm_27.TU.AmTr_v1.0_scaffold00033.28 0.887199577289207 27 AMTR_s00002p00252090 Pentatricopeptide repeat-containing protein At1g32415, mitochondrial OS=Arabidopsis thaliana 0.8871841399817135 28 AMTR_s00026p00112660 Nucleotide metabolism.purines.phosphotransfers.adenylate kinase evm_27.TU.AmTr_v1.0_scaffold00026.52 0.886074040419007 78 AMTR_s00011p00258380 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor ATSIG1, SIGB, ATSIG2, ABC1, SIG2, SIGA, SIG1, evm_27.TU.AmTr_v1.0_scaffold00011.182 0.8859967414156449 39 AMTR_s00031p00067070 Pentatricopeptide repeat-containing protein At5g03800 OS=Arabidopsis thaliana emb1899, EMB175, EMB166 0.8852513529598898 37 AMTR_s00006p00239950 Solute transport.carrier-mediated transport.DMT superfamily.UmamiT-type solute transporter WAT1, evm_27.TU.AmTr_v1.0_scaffold00006.115 0.8826160626953188 33 AMTR_s00063p00074060 evm_27.TU.AmTr_v1.0_scaffold00063.7 0.8803813245917677 34 AMTR_s00104p00092530 Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00104.35 0.8800579580945134 64 AMTR_s00052p00157970 evm_27.TU.AmTr_v1.0_scaffold00052.66 0.8798696398269097 84 AMTR_s00019p00227810 ACT domain-containing protein ACR11 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.297 0.8798171729258085 37 AMTR_s00051p00099980 Protein modification.phosphorylation.TKL kinase superfamily.MLK kinase families.MLK-PP2C kinase evm_27.TU.AmTr_v1.0_scaffold00051.41 0.8776616985837179 39 AMTR_s00038p00071780 Pentatricopeptide repeat-containing protein At3g26540 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00038.30 0.8767858659518356 83 AMTR_s00111p00088830 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00111.59 0.8766344364723484 41 AMTR_s00103p00092610 Lipid metabolism.phytosterols.campesterol synthesis.sterol C-24 methyltransferase SMT1, CPH, evm_27.TU.AmTr_v1.0_scaffold00103.50 0.8763361921807424 43 AMTR_s00176p00057350 Solute transport.primary active transport.P-type ATPase superfamily.P1 family.HMA P1B-type heavy metal cation-transporting ATPase PAA1, HMA6, evm_27.TU.AmTr_v1.0_scaffold00176.30 0.8750983388356562 53 AMTR_s00100p00051890 Carbohydrate metabolism.starch metabolism.synthesis.starch synthase activities.granule-bound starch (amylose) synthase evm_27.TU.AmTr_v1.0_scaffold00100.11 0.8749083684419912 45 AMTR_s00061p00163460 Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00061.158 0.8731507551370326 46 AMTR_s00058p00055710 Protein degradation.peptidase families.serine-type peptidase activities.LON protease evm_27.TU.AmTr_v1.0_scaffold00058.25 0.8720771269971647 49 AMTR_s00056p00223220 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCC transporter MRP6, ATMRP6, ABCC8, evm_27.TU.AmTr_v1.0_scaffold00056.227 0.8710039585307616 50 AMTR_s00024p00252900 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.MPH2 acclimation factor evm_27.TU.AmTr_v1.0_scaffold00024.352 0.8698920376516329 68 AMTR_s00006p00260630 Protein degradation.peptidase families.serine-type peptidase activities.SppA plastidial protease SPPA1, SPPA, evm_27.TU.AmTr_v1.0_scaffold00006.223 0.8684158497923332 63 AMTR_s00055p00224220 Carbohydrate metabolism.starch metabolism.synthesis.starch branching enzyme EMB2729, BE1, evm_27.TU.AmTr_v1.0_scaffold00055.175 0.8683130816126553 71 AMTR_s00049p00210350 Putative pentatricopeptide repeat-containing protein At3g01580 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00049.234 0.8677210941079367 82 AMTR_s00032p00091590 Coenzyme metabolism.tetrapyrrol biosynthesis.uroporphyrinogen III formation.porphobilinogen deaminase HEMC, evm_27.TU.AmTr_v1.0_scaffold00032.57 0.8671725143520339 68 AMTR_s00059p00121300 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.chlorophyll b reductase complex.NOL component NOL, evm_27.TU.AmTr_v1.0_scaffold00059.95 0.8669387399914905 91 AMTR_s00019p00211360 Cell cycle.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.APC/C E3 ubiquitin ligase complex.platform subcomplex.APC4 component evm_27.TU.AmTr_v1.0_scaffold00019.256 0.8641966907757027 59 AMTR_s00092p00126260 evm_27.TU.AmTr_v1.0_scaffold00092.90 0.8636886019758084 98 AMTR_s00058p00150890 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC7 component PDE225, PTAC7, evm_27.TU.AmTr_v1.0_scaffold00058.119 0.8631120121787142 61 AMTR_s00003p00258580 Indole-3-acetic acid-amido synthetase GH3.10 OS=Arabidopsis thaliana DFL2, GH3-10, evm_27.TU.AmTr_v1.0_scaffold00003.326 0.8618910942294511 62 AMTR_s00025p00231300 evm_27.TU.AmTr_v1.0_scaffold00025.336 0.8597116454054754 66 AMTR_s00107p00082420 DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00107.24 0.8580543037830731 69 AMTR_s00024p00220830 evm_27.TU.AmTr_v1.0_scaffold00024.217 0.856922508118422 73 AMTR_s00007p00266290 evm_27.TU.AmTr_v1.0_scaffold00007.371 0.8546149490996373 85 AMTR_s00050p00185440 Pentatricopeptide repeat-containing protein At2g41080 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00050.48 0.8539880970948084 77 AMTR_s00030p00229140 Redox homeostasis.chloroplast redox homeostasis.2-Cys peroxiredoxin activities.typical 2-Cys peroxiredoxin (2-CysPrx) evm_27.TU.AmTr_v1.0_scaffold00030.180 0.8528762959314442 80 AMTR_s00062p00065360 Photosynthesis.photophosphorylation.photosystem II.photoprotection.non-photochemical quenching (NPQ).LCNP NPQ-regulator lipocalin CHL, evm_27.TU.AmTr_v1.0_scaffold00062.38 0.8526098773237537 83 AMTR_s00001p00261720 RNA biosynthesis.transcriptional activation.bZIP superfamily.bZIP transcription factor evm_27.TU.AmTr_v1.0_scaffold00001.382 0.846166262948723 97 AMTR_s00023p00031940 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPP Fe-Zn-dependent phosphatase families.SLP phosphatase evm_27.TU.AmTr_v1.0_scaffold00023.9 0.8446260444067747 98