Sequence Description Alias PCC hrr AMTR_s00032p00226710 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.coproporphyrinogen III oxidase activities.HemF oxygen-dependent coproporphyrinogen III oxidase ATCPO-I, LIN2, HEMF1, evm_27.TU.AmTr_v1.0_scaffold00032.243 0.937625051804806 1 AMTR_s00031p00204460 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.cpSRP54 component 54CP, SRP54CP, CPSRP54, FFC, evm_27.TU.AmTr_v1.0_scaffold00031.99 0.9322612790092543 13 AMTR_s00096p00107320 Coenzyme metabolism.phylloquinone synthesis.1,4-dihydroxy-2-naphthoyl-CoA synthase ECHID, DHNS, evm_27.TU.AmTr_v1.0_scaffold00096.66 0.9318670642464411 5 AMTR_s00089p00093330 Protein biosynthesis.aminoacyl-tRNA synthetase activities.lysine-tRNA ligase OVA5, ATKRS-2, evm_27.TU.AmTr_v1.0_scaffold00089.48 0.9263708812371841 4 AMTR_s00027p00142670 Pyridoxal reductase, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00027.43 0.9249658160942686 26 AMTR_s00003p00257280 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00003.320 0.924831606986291 18 AMTR_s00002p00128010 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP9/FSD2 component FSD2, evm_27.TU.AmTr_v1.0_scaffold00002.85 0.9243864314407557 7 AMTR_s00077p00156540 Serotonin N-acetyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica ATNSI, NSI, evm_27.TU.AmTr_v1.0_scaffold00077.160 0.9223572087755434 8 AMTR_s00175p00037000 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase ATATH8, evm_27.TU.AmTr_v1.0_scaffold00175.11 0.921688482545086 12 AMTR_s00070p00106620 DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00070.53 0.9204763442554103 15 AMTR_s00049p00107230 evm_27.TU.AmTr_v1.0_scaffold00049.81 0.9198263776205243 36 AMTR_s00053p00158610 Coenzyme metabolism.tetrahydrofolate synthesis.folyl-polyglutamate synthetase FPGS2, ATDFC, DFC, evm_27.TU.AmTr_v1.0_scaffold00053.107 0.9179365651853987 12 AMTR_s00136p00085920 Pentatricopeptide repeat-containing protein At1g10910, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00136.44 0.9168807629827297 26 AMTR_s00031p00061040 Uncharacterized protein At5g03900, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00031.26 0.9154531286527416 16 AMTR_s00001p00253330 evm_27.TU.AmTr_v1.0_scaffold00001.328 0.9149719669696048 30 AMTR_s00004p00107700 Protein modification.peptide maturation.plastid.EGY protease EGY1, evm_27.TU.AmTr_v1.0_scaffold00004.86 0.9142755835563265 24 AMTR_s00068p00065660 evm_27.TU.AmTr_v1.0_scaffold00068.27 0.9133213902083902 17 AMTR_s00028p00245370 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM2-type splicing factor ATCFM2, CFM2, evm_27.TU.AmTr_v1.0_scaffold00028.138 0.9109202259736643 47 AMTR_s00001p00259120 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL5 component evm_27.TU.AmTr_v1.0_scaffold00001.365 0.9106868078781206 19 AMTR_s00001p00080980 Amino acid metabolism.biosynthesis.glutamate family.histidine.ATP phosphoribosyl transferase HISN1B, ATATP-PRT2, ATP-PRT2, evm_27.TU.AmTr_v1.0_scaffold00001.55 0.9104332615353767 20 AMTR_s00017p00132450 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic110 component TIC110, ATTIC110, evm_27.TU.AmTr_v1.0_scaffold00017.54 0.9075075115968293 72 AMTR_s00007p00156370 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.chlorophyll synthase ChlG CHLG, G4, ATG4, evm_27.TU.AmTr_v1.0_scaffold00007.117 0.9071231842343963 24 AMTR_s00010p00251120 evm_27.TU.AmTr_v1.0_scaffold00010.357 0.9065671866531536 23 AMTR_s00058p00181770 Protein EXECUTER 2, chloroplastic OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00058.172 0.9064335917619553 24 AMTR_s00029p00193780 Fructokinase-like 1, chloroplastic OS=Arabidopsis thaliana FLN1, evm_27.TU.AmTr_v1.0_scaffold00029.262 0.906348891802513 41 AMTR_s00068p00029180 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.ZDS zeta-carotene desaturase PDE181, ZDS, SPC1, evm_27.TU.AmTr_v1.0_scaffold00068.6 0.9063203760512026 58 AMTR_s00009p00265580 DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00009.383 0.9057966792566079 30 AMTR_s00049p00226280 Chloroplast sensor kinase, chloroplastic OS=Arabidopsis thaliana CSK, evm_27.TU.AmTr_v1.0_scaffold00049.272 0.9045029941542726 38 AMTR_s00056p00185560 RNA processing.organelle machineries.RNA editing.plastidial RNA editing.ECB2/VAC1 RNA editing factor VAC1, ECB2, ATECB2 0.9039547419693191 80 AMTR_s00021p00131420 Enzyme classification.EC_2 transferases.EC_2.5 transferase transferring alkyl or aryl group, other than methyl group IPT9, ATIPT9, evm_27.TU.AmTr_v1.0_scaffold00021.85 0.9012063065243366 38 AMTR_s00058p00101170 Protein biosynthesis.aminoacyl-tRNA synthetase activities.methionine-tRNA ligase OVA1, evm_27.TU.AmTr_v1.0_scaffold00058.56 0.9011161739962027 69 AMTR_s00053p00152680 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.CHL-D component V157, PDE166, ALB1, CHLD, ALB-1V, evm_27.TU.AmTr_v1.0_scaffold00053.100 0.901067413515345 33 AMTR_s00050p00111180 Carbohydrate metabolism.starch metabolism.degradation.dephosphorylation.SEX4-type phosphoglucan phosphatase ATSEX4, ATPTPKIS1, DSP4, SEX4, evm_27.TU.AmTr_v1.0_scaffold00050.23 0.9010335092770959 33 AMTR_s00001p00173820 Pentatricopeptide repeat-containing protein At2g17033 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00001.164 0.8997946525529166 39 AMTR_s00023p00218670 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL10 | mtRPL10 component evm_27.TU.AmTr_v1.0_scaffold00023.162 0.8981319062934261 36 AMTR_s00048p00223180 Protein biosynthesis.aminoacyl-tRNA synthetase activities.serine-tRNA ligase ATSRS, OVA7, SRS, evm_27.TU.AmTr_v1.0_scaffold00048.210 0.8973581154630179 48 AMTR_s00040p00213060 Protein translocation.chloroplast.inner envelope TIC translocation system.TIC-20 complex.Tic100 component emb1211, evm_27.TU.AmTr_v1.0_scaffold00040.228 0.8972938944216631 99 AMTR_s00016p00219550 evm_27.TU.AmTr_v1.0_scaffold00016.199 0.8969835364858908 39 AMTR_s00003p00212290 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS1 component RPS1, ARRPS1, evm_27.TU.AmTr_v1.0_scaffold00003.203 0.8969751180068194 51 AMTR_s00163p00031970 evm_27.TU.AmTr_v1.0_scaffold00163.9 0.8969279107902786 42 AMTR_s00131p00066980 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea evm_27.TU.AmTr_v1.0_scaffold00131.39 0.8959290418443007 53 AMTR_s00071p00072250 Probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00071.42 0.8945004100766191 63 AMTR_s00047p00218860 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.FLN2 regulatory factor FLN2, evm_27.TU.AmTr_v1.0_scaffold00047.167 0.8937014866040409 86 AMTR_s00112p00137130 Solute transport.carrier-mediated transport.MFS superfamily.SP family.hexose transporter (SGB/GlcT-type) evm_27.TU.AmTr_v1.0_scaffold00112.35 0.8935916780962752 48 AMTR_s00050p00032750 evm_27.TU.AmTr_v1.0_scaffold00050.4 0.8926796258822939 49 AMTR_s00021p00196260 evm_27.TU.AmTr_v1.0_scaffold00021.159 0.8913469441678824 51 AMTR_s00028p00227970 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCB cytochrome b6 maturation system (system IV).CCB4 component CCB4, evm_27.TU.AmTr_v1.0_scaffold00028.110 0.8911223989216639 52 AMTR_s00024p00162030 Protein trichome birefringence OS=Arabidopsis thaliana TBR 0.8902911739199723 53 AMTR_s00120p00092320 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen LUT5, CYP97A3, evm_27.TU.AmTr_v1.0_scaffold00120.41 0.8899376553787699 54 AMTR_s00110p00125590 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.amylase activities.alpha amylase AMY3, ATAMY3, evm_27.TU.AmTr_v1.0_scaffold00110.101 0.8899047601166565 55 AMTR_s00002p00194810 Protein degradation.peptidase families.serine-type peptidase activities.chloroplast Clp-type protease complex.ClpR non-proteolytic core component CLPR4, evm_27.TU.AmTr_v1.0_scaffold00002.176 0.8895097594516279 67 AMTR_s00039p00083280 Secondary metabolism.nitrogen-containing secondary compounds.glucosinolates.glucosinolate synthesis.methylthioalkylmalate isomerase.large subunit ATLEUC1, IIL1, evm_27.TU.AmTr_v1.0_scaffold00039.46 0.8881289701839095 97 AMTR_s00023p00232870 Pentatricopeptide repeat-containing protein At5g02830, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00023.190 0.8879935971345021 73 AMTR_s00017p00235750 Coenzyme metabolism.tetrahydrofolate synthesis.tetrahydrofolate (THF) interconversions.5,10-methenyl-THF synthetase evm_27.TU.AmTr_v1.0_scaffold00017.195 0.887973580121406 60 AMTR_s00103p00115980 Protein TAB2 homolog, chloroplastic OS=Arabidopsis thaliana ATAB2, evm_27.TU.AmTr_v1.0_scaffold00103.69 0.8878894762902401 61 AMTR_s00007p00177920 Carbohydrate metabolism.sucrose metabolism.regulation of sucrose/starch partitioning.bifunctional 6-phosphofructo-2-kinase and fructose-2,6-bisphosphatase F2KP, FKFBP, ATF2KP, evm_27.TU.AmTr_v1.0_scaffold00007.140 0.8877290110436977 62 AMTR_s00126p00126070 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic22 component evm_27.TU.AmTr_v1.0_scaffold00126.65 0.8873348133617238 63 AMTR_s01569p00009850 Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold01569.1 0.8869433857789739 64 AMTR_s00006p00259220 Coenzyme metabolism.tetrapyrrol biosynthesis.uroporphyrinogen III formation.porphobilinogen synthase HEMB1, evm_27.TU.AmTr_v1.0_scaffold00006.214 0.8865595965391514 65 AMTR_s00010p00055110 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psPSRP3 component evm_27.TU.AmTr_v1.0_scaffold00010.27 0.8864016493741765 66 AMTR_s00058p00093170 evm_27.TU.AmTr_v1.0_scaffold00058.50 0.8859971042128508 68 AMTR_s00021p00119000 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL34 component evm_27.TU.AmTr_v1.0_scaffold00021.66 0.8847212072364061 71 AMTR_s00045p00205250 Protein biosynthesis.aminoacyl-tRNA synthetase activities.isoleucine-tRNA ligase OVA2, evm_27.TU.AmTr_v1.0_scaffold00045.272 0.8842291881611462 97 AMTR_s00033p00195130 Protein biosynthesis.aminoacyl-tRNA synthetase activities.cysteine-tRNA ligase SYCO ARATH, evm_27.TU.AmTr_v1.0_scaffold00033.156 0.8839087450429743 92 AMTR_s00133p00020030 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.Whirly-type splicing factor ATWHY1, WHY1, PTAC1, evm_27.TU.AmTr_v1.0_scaffold00133.2 0.8834790875766212 74 AMTR_s00354p00009120 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP3/TAC10 component PTAC10, PDE312, evm_27.TU.AmTr_v1.0_scaffold00354.1 0.8830176941028945 88 AMTR_s00022p00249930 emb2738, evm_27.TU.AmTr_v1.0_scaffold00022.381 0.8822928282431413 95 AMTR_s00018p00168540 DNA mismatch repair protein MSH1, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00018.94 0.881910420738349 79 AMTR_s00056p00047160 Probable inactive ATP-dependent zinc metalloprotease FTSHI 2, chloroplastic OS=Arabidopsis thaliana EMB2083, evm_27.TU.AmTr_v1.0_scaffold00056.29 0.8818414603419531 79 AMTR_s00066p00198600 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.VIPP protein PTAC4, VIPP1, evm_27.TU.AmTr_v1.0_scaffold00066.264 0.8815555289330861 100 AMTR_s00057p00193080 Protein biosynthesis.organelle translation machineries.translation termination.PrfA-type peptide chain release factor APG3, evm_27.TU.AmTr_v1.0_scaffold00057.217 0.8815003416626465 100 AMTR_s00024p00113120 evm_27.TU.AmTr_v1.0_scaffold00024.63 0.8814947309530927 84 AMTR_s00121p00128060 Cell cycle.organelle machineries.organelle fission.plastid division.ARC5 dynamin-like protein DRP5B, ARC5, evm_27.TU.AmTr_v1.0_scaffold00121.36 0.8814456652224874 86 AMTR_s00068p00165420 evm_27.TU.AmTr_v1.0_scaffold00068.119 0.8809856663573414 89 AMTR_s00004p00168690 Nucleotide metabolism.pyrimidines.catabolism.5-nucleotidase evm_27.TU.AmTr_v1.0_scaffold00004.187 0.8807514400986902 89 AMTR_s00115p00062270 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.Y3IP1 protein AtCEST, CEST, evm_27.TU.AmTr_v1.0_scaffold00115.3 0.8806293911394463 90 AMTR_s00038p00234220 Haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00038.234 0.8783706306472508 93 AMTR_s00155p00027590 Pentatricopeptide repeat-containing protein At1g30610, chloroplastic OS=Arabidopsis thaliana EMB2279, EMB88, evm_27.TU.AmTr_v1.0_scaffold00155.11 0.8780596222326847 94 AMTR_s00005p00062400 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.PRDA1 FSD2-interacting factor evm_27.TU.AmTr_v1.0_scaffold00005.9 0.8777636845153859 95 AMTR_s00109p00097700 Malonate--CoA ligase OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00109.85 0.8777202004942997 96 AMTR_s00032p00233500 Protein modification.phosphorylation.CMGC kinase superfamily.CLK/LAMMER kinase AFC1, AME2, FC1, evm_27.TU.AmTr_v1.0_scaffold00032.261 0.8761838264067534 98