Sequence Description Alias PCC hrr AMTR_s00010p00264770 Photosynthesis.photophosphorylation.photosystem I.LHC-I complex.LHCa4-type component CAB4, LHCA4, evm_27.TU.AmTr_v1.0_scaffold00010.505 0.9631402967469234 3 AMTR_s00061p00065790 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaG PSAG, evm_27.TU.AmTr_v1.0_scaffold00061.40 0.9592957540704757 4 AMTR_s00009p00268360 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb6-type component CP24, LHCB6, evm_27.TU.AmTr_v1.0_scaffold00009.423 0.9582245904209991 4 AMTR_s00049p00157390 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.component PsbY YCF32, PSBY, evm_27.TU.AmTr_v1.0_scaffold00049.142 0.9577298599982988 11 AMTR_s00092p00018230 Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.4 0.9571251340352547 5 AMTR_s00012p00257120 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC16 component PTAC16, evm_27.TU.AmTr_v1.0_scaffold00012.301 0.9554635472791182 6 AMTR_s00060p00116070 Nutrient uptake.nitrogen assimilation.ammonium assimilation.glutamine synthetase ATGSR1, GLN1;1, ATGLN1;1, GSR 1, evm_27.TU.AmTr_v1.0_scaffold00060.55 0.9505453131290256 7 AMTR_s00103p00041210 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaD PSAD-1, evm_27.TU.AmTr_v1.0_scaffold00103.18 0.9504319716170276 8 AMTR_s00044p00105130 evm_27.TU.AmTr_v1.0_scaffold00044.75 0.9497154948597661 9 AMTR_s00087p00141000 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaL PSAL, evm_27.TU.AmTr_v1.0_scaffold00087.44 0.9492484735321222 10 AMTR_s00001p00142570 Photosynthesis.photophosphorylation.Cytb6/f to PS-I electron carriers.plastocyanin DRT112, PETE2, evm_27.TU.AmTr_v1.0_scaffold00001.122 0.9482819070375916 15 AMTR_s00093p00107560 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor CRR3 evm_27.TU.AmTr_v1.0_scaffold00093.37 0.9468305880379236 12 AMTR_s00013p00180670 Photosynthesis.photophosphorylation.photosystem I.LHC-I complex.LHCa2-type component LHCA2, evm_27.TU.AmTr_v1.0_scaffold00013.107 0.9468196080416657 13 AMTR_s00022p00232380 Photosynthesis.photophosphorylation.ATP synthase complex.peripheral CF1 subcomplex.subunit delta ATPD, evm_27.TU.AmTr_v1.0_scaffold00022.315 0.9446007924352527 14 AMTR_s00098p00157610 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.oxygen-evolving center (OEC) extrinsic proteins.Viridiplantae-specific components.OEC16 component PsbQ PSBQ-2, PSII-Q, PSBQ, evm_27.TU.AmTr_v1.0_scaffold00098.46 0.9430694416924577 18 AMTR_s00025p00126870 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb32 protein TLP18.3, evm_27.TU.AmTr_v1.0_scaffold00025.118 0.9426032464288272 16 AMTR_s00175p00040360 Photosynthesis.photophosphorylation.photosystem I.LHC-I complex.LHCa1-type component LHCA1, evm_27.TU.AmTr_v1.0_scaffold00175.14 0.9424533378042529 17 AMTR_s00099p00139960 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb5-type component LHCB5, evm_27.TU.AmTr_v1.0_scaffold00099.124 0.9417699407685943 19 AMTR_s00058p00182650 Enzyme classification.EC_1 oxidoreductases.EC_1.3 oxidoreductase acting on CH-CH group of donor evm_27.TU.AmTr_v1.0_scaffold00058.174 0.939567186275103 19 AMTR_s00135p00117490 Lipid metabolism.fatty acid synthesis.fatty acid desaturation and elongation.fatty acid elongation.fatty acid elongation complex.KCS 3-ketoacyl-CoA synthase evm_27.TU.AmTr_v1.0_scaffold00135.68 0.9386774896885652 20 AMTR_s00149p00054540 Photosynthesis.photorespiration.glycine cleavage system.H-protein lipoamide-containing component evm_27.TU.AmTr_v1.0_scaffold00149.34 0.9381004954102837 21 AMTR_s00131p00114510 Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00131.86 0.9366973528152622 22 AMTR_s00049p00176170 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.regulation.CbbY xylulose-1,5-bisphosphate phosphatase evm_27.TU.AmTr_v1.0_scaffold00049.168 0.9311830471639453 23 AMTR_s00072p00084990 Photosynthesis.photophosphorylation.cytochrome b6/f complex.Rieske iron-sulfur component PetC PGR1, PETC, evm_27.TU.AmTr_v1.0_scaffold00072.37 0.9288335659174021 24 AMTR_s00007p00263960 Redox homeostasis.chloroplast redox homeostasis.2-Cys peroxiredoxin activities.atypical 2-Cys peroxiredoxin (PrxQ) ATPRX Q, evm_27.TU.AmTr_v1.0_scaffold00007.343 0.9281196687497423 25 AMTR_s00062p00189550 Cellular respiration.glycolysis.plastidial glycolysis.phosphoglycerate kinase PGK1, evm_27.TU.AmTr_v1.0_scaffold00062.192 0.9276846616616202 26 AMTR_s00109p00068030 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaH PSAH-1, evm_27.TU.AmTr_v1.0_scaffold00109.52 0.9244226476716877 27 AMTR_s00027p00217960 Rhodanese-like domain-containing protein 14, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00027.81 0.9241011678254734 28 AMTR_s00045p00069900 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb1/2/3-type component LHCB1.5, LHB1B2, evm_27.TU.AmTr_v1.0_scaffold00045.58 0.9240024554728954 29 AMTR_s00010p00265990 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.lumen subcomplex L.PnsL2/PQL1 component PQL1, PQL2, evm_27.TU.AmTr_v1.0_scaffold00010.518 0.9236376058883772 30 AMTR_s00095p00128730 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.Mg-protoporphyrin IX monomethylester cyclase complex.CRD1 catalytic component ACSF, CHL27, CRD1, evm_27.TU.AmTr_v1.0_scaffold00095.88 0.9235128379377682 31 AMTR_s00001p00269430 Probable carboxylesterase 8 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00001.439 0.9223414179329241 32 AMTR_s00024p00218080 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.component PsbX evm_27.TU.AmTr_v1.0_scaffold00024.208 0.9221378052545838 33 AMTR_s00002p00271180 Carbohydrate metabolism.oxidative pentose phosphate pathway.non-oxidative phase.ribose 5-phosphate isomerase evm_27.TU.AmTr_v1.0_scaffold00002.613 0.9209642241101291 34 AMTR_s00010p00265920 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex B.PnsB4/NDF6 component NDF6, evm_27.TU.AmTr_v1.0_scaffold00010.515 0.9190379079287178 35 AMTR_s00007p00081670 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.oxygen-evolving center (OEC) extrinsic proteins.Viridiplantae-specific components.OEC23 component PsbP OE23, OEE2, PSBP-1, PSII-P, evm_27.TU.AmTr_v1.0_scaffold00007.46 0.9183525539197014 36 AMTR_s00016p00108610 Photosynthesis.photophosphorylation.linear electron flow.ferredoxin-NADP reductase (FNR) activity.ferredoxin-NADP oxidoreductase FNR1, ATLFNR1, evm_27.TU.AmTr_v1.0_scaffold00016.69 0.9183240629330884 55 AMTR_s00088p00153020 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb1/2/3-type component LHCB2.3, LHCB2, LHCB2.4, evm_27.TU.AmTr_v1.0_scaffold00088.122 0.9182519810950749 38 AMTR_s00001p00272260 Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana PTAC8, TMP14, PSI-P, PSAP, evm_27.TU.AmTr_v1.0_scaffold00001.510 0.917997232650568 39 AMTR_s00004p00065250 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.MET1 protein ZKT, evm_27.TU.AmTr_v1.0_scaffold00004.48 0.9170428546528957 40 AMTR_s00002p00256470 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00002.408 0.9161340447543516 41 AMTR_s00107p00150560 evm_27.TU.AmTr_v1.0_scaffold00107.45 0.9135185264254765 42 AMTR_s00101p00121540 PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00101.95 0.9123782384155203 43 AMTR_s00022p00242510 Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00022.352 0.9120488649030506 44 AMTR_s00098p00154060 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.lumen subcomplex L.PnsL3/PQL2 component PQL1, PQL2, evm_27.TU.AmTr_v1.0_scaffold00098.43 0.9116199679187368 45 AMTR_s00019p00167210 evm_27.TU.AmTr_v1.0_scaffold00019.163 0.9107448172740447 46 AMTR_s00109p00146830 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex B.PnsB3/NDF4 component NDF4, evm_27.TU.AmTr_v1.0_scaffold00109.159 0.9093284642776468 47 AMTR_s00001p00191890 Photosynthesis.photophosphorylation.cyclic electron flow.PGR5/PGRL1 complex.PGRL1-like component PGR5-LIKE A, evm_27.TU.AmTr_v1.0_scaffold00001.191 0.908918066760903 48 AMTR_s00067p00081240 Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana OTP84, evm_27.TU.AmTr_v1.0_scaffold00067.57 0.9044742008187282 49 AMTR_s00065p00210500 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex B.PnsB1/NDF1 component NDH48, NDF1, evm_27.TU.AmTr_v1.0_scaffold00065.208 0.9043317057357221 50 AMTR_s00032p00148610 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.component PsbTn PSBTN, evm_27.TU.AmTr_v1.0_scaffold00032.114 0.9042725009165645 51 AMTR_s00025p00041760 Carbohydrate metabolism.starch metabolism.synthesis.ADP-glucose pyrophosphorylase APL1, ADG2, evm_27.TU.AmTr_v1.0_scaffold00025.20 0.9037874883666415 52 AMTR_s00029p00134700 PSBQ-2, PSII-Q, PSBQ, evm_27.TU.AmTr_v1.0_scaffold00029.153 0.9031767073666814 53 AMTR_s00019p00236430 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.transfer phase.NFU1/2/3 component ATCNFU3, NFU3, evm_27.TU.AmTr_v1.0_scaffold00019.332 0.9029068228401868 54 AMTR_s00061p00059490 Photosynthesis.photophosphorylation.photosystem I.LHC-I complex.LHCa3-type component LHCA3, evm_27.TU.AmTr_v1.0_scaffold00061.34 0.9019379931126479 55 AMTR_s00099p00163300 RNA biosynthesis.transcriptional activation.NAC transcription factor ANAC034, LOV1, ANAC035, NAC035, evm_27.TU.AmTr_v1.0_scaffold00099.164 0.9004263098173422 56 AMTR_s00001p00271310 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.xanthophyll synthesis.carotenoid epsilon ring hydroxylase CYP97C1, LUT1, evm_27.TU.AmTr_v1.0_scaffold00001.484 0.8996128444121989 57 AMTR_s00025p00042290 Carbohydrate metabolism.starch metabolism.synthesis.ADP-glucose pyrophosphorylase APL1, ADG2, evm_27.TU.AmTr_v1.0_scaffold00025.21 0.899480978789168 58 AMTR_s00078p00084050 evm_27.TU.AmTr_v1.0_scaffold00078.57 0.8994689672556508 59 AMTR_s00059p00176390 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.oxygen-evolving center (OEC) extrinsic proteins.OEC33 component PsbO OEC33, PSBO-2, PSBO2, evm_27.TU.AmTr_v1.0_scaffold00059.181 0.8985067260026751 60 AMTR_s00018p00255680 Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00018.171 0.8982528283018509 61 AMTR_s00012p00254690 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase RLK, evm_27.TU.AmTr_v1.0_scaffold00012.280 0.8982163880835256 62 AMTR_s00048p00229560 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group.TPT phosphometabolite transporter evm_27.TU.AmTr_v1.0_scaffold00048.224 0.8980668458686906 63 AMTR_s00005p00239290 Coenzyme metabolism.thiamine pyrophosphate synthesis.thiazole synthesis.biosynthetic protein (Thi4) TZ, THI4, THI1, evm_27.TU.AmTr_v1.0_scaffold00005.125 0.897476697367626 65 AMTR_s00032p00144550 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaF PSAF, evm_27.TU.AmTr_v1.0_scaffold00032.106 0.8972402965760811 66 AMTR_s00079p00061090 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo dimer.small subunit evm_27.TU.AmTr_v1.0_scaffold00079.19 0.8954267154774364 67 AMTR_s00001p00175920 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.geranylgeranyl pyrophosphate synthase GGR, evm_27.TU.AmTr_v1.0_scaffold00001.167 0.895356288578006 68 AMTR_s00115p00066030 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor CRR41 evm_27.TU.AmTr_v1.0_scaffold00115.4 0.8951378097503759 69 AMTR_s00119p00060890 Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana VAR3, evm_27.TU.AmTr_v1.0_scaffold00119.41 0.8950276177780301 70 AMTR_s00153p00078810 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb1/2/3-type component LHCB3*1, LHCB3, evm_27.TU.AmTr_v1.0_scaffold00153.42 0.893359918612 71 AMTR_s00002p00266120 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.component PsbW PSBW, evm_27.TU.AmTr_v1.0_scaffold00002.505 0.8931492281874024 72 AMTR_s00209p00025500 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaN PSAN, evm_27.TU.AmTr_v1.0_scaffold00209.5 0.8923565250716896 73 AMTR_s00004p00044800 Ferredoxin C 1, chloroplastic OS=Arabidopsis thaliana FdC2, evm_27.TU.AmTr_v1.0_scaffold00004.27 0.8885080363626657 74 AMTR_s00049p00119540 Redox homeostasis.chloroplast redox homeostasis.F-type thioredoxin ATF1, TRXF1, evm_27.TU.AmTr_v1.0_scaffold00049.94 0.8875080555793896 75 AMTR_s00007p00094450 Protein SMAX1-LIKE 7 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00007.53 0.885922516718581 76 AMTR_s00018p00092490 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaO PSAO, evm_27.TU.AmTr_v1.0_scaffold00018.41 0.8858302755515218 77 AMTR_s00081p00063880 Protein modification.phosphorylation.AGC kinase superfamily.AGC-VIII kinase PID2, evm_27.TU.AmTr_v1.0_scaffold00081.20 0.8856757278402194 78 AMTR_s00189p00032350 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb1/2/3-type component LHCB1.3, CAB140, AB140, CAB1, evm_27.TU.AmTr_v1.0_scaffold00189.5 0.8843488489053833 79 AMTR_s00034p00145870 evm_27.TU.AmTr_v1.0_scaffold00034.44 0.8841340451647749 80 AMTR_s00062p00201460 External stimuli response.drought.stomatal closure signalling.CAS calcium sensor CaS, evm_27.TU.AmTr_v1.0_scaffold00062.212 0.8834562725984756 81 AMTR_s00109p00021460 BURP domain protein RD22 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00109.5 0.882726247315307 82 AMTR_s00149p00069450 evm_27.TU.AmTr_v1.0_scaffold00149.48 0.8820994239498395 83 AMTR_s00016p00073950 evm_27.TU.AmTr_v1.0_scaffold00016.37 0.880727853099463 84 AMTR_s00049p00052690 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.GUN4 cofactor GUN4, evm_27.TU.AmTr_v1.0_scaffold00049.26 0.8800257704176689 85 AMTR_s00138p00114800 Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00138.58 0.8798589240759587 86 AMTR_s00068p00047550 Photosynthesis.photophosphorylation.photosystem II.photoprotection.non-photochemical quenching (NPQ).FLAP1 NPQ-regulator protein evm_27.TU.AmTr_v1.0_scaffold00068.17 0.8790142125665746 87 AMTR_s00025p00246210 RNA processing.organelle machineries.ribonuclease activities.CSP41 endoribonuclease CSP41A, evm_27.TU.AmTr_v1.0_scaffold00025.394 0.8781597909781895 88 AMTR_s00003p00270950 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor CRR9 evm_27.TU.AmTr_v1.0_scaffold00003.446 0.8763608742949748 89 AMTR_s00045p00175560 Calvin cycle protein CP12-2, chloroplastic OS=Arabidopsis thaliana CP12, CP12-2, evm_27.TU.AmTr_v1.0_scaffold00045.209 0.8760402069416691 91 AMTR_s00054p00125650 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL21 component evm_27.TU.AmTr_v1.0_scaffold00054.40 0.875420803189085 92 AMTR_s00149p00098530 evm_27.TU.AmTr_v1.0_scaffold00149.83 0.8741743116218 93 AMTR_s00127p00060060 RNA biosynthesis.transcriptional activation.MADS box transcription factor SVP, AGL22, evm_27.TU.AmTr_v1.0_scaffold00127.17 0.8739949498195627 94 AMTR_s00176p00047500 evm_27.TU.AmTr_v1.0_scaffold00176.21 0.8739367297391194 95 AMTR_s00025p00156240 RNA biosynthesis.transcriptional activation.C2C2 superfamily.BBX/CONSTANS transcription factor CIA2, evm_27.TU.AmTr_v1.0_scaffold00025.176 0.8733880206027756 97 AMTR_s00016p00088520 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.PAM68 protein evm_27.TU.AmTr_v1.0_scaffold00016.50 0.8715918548036559 98 AMTR_s00077p00179590 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.Mg-protoporphyrin IX monomethylester cyclase complex.LCAA scaffolding component evm_27.TU.AmTr_v1.0_scaffold00077.201 0.8715020801375459 99 AMTR_s00025p00248060 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor SIGD, SIG4, evm_27.TU.AmTr_v1.0_scaffold00025.401 0.8711337216286542 100