Sequence Description Alias PCC hrr AMTR_s00109p00097700 Malonate--CoA ligase OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00109.85 0.9691068534123549 1 AMTR_s00175p00057810 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.4-hydroxy-3-methylbut-2-enyl diphosphate synthase CSB3, CLB4, GCPE, HDS, ISPG, evm_27.TU.AmTr_v1.0_scaffold00175.30 0.9285718081519426 5 AMTR_s00068p00029180 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.ZDS zeta-carotene desaturase PDE181, ZDS, SPC1, evm_27.TU.AmTr_v1.0_scaffold00068.6 0.9218380747639552 19 AMTR_s00101p00064110 Lipid metabolism.galactolipid and sulfolipid synthesis.UDP-sulfoquinovose synthase SQD1, evm_27.TU.AmTr_v1.0_scaffold00101.37 0.9104797622689945 15 AMTR_s00132p00051080 Protein DJ-1 homolog C OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00132.13 0.9081563496844497 8 AMTR_s00077p00167440 evm_27.TU.AmTr_v1.0_scaffold00077.179 0.9068120089474313 49 AMTR_s00001p00069110 Pentatricopeptide repeat-containing protein At5g42310, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00001.44 0.9063704377225915 7 AMTR_s00048p00030920 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo assembly.RAF2 assembly factor evm_27.TU.AmTr_v1.0_scaffold00048.6 0.9008401523674738 8 AMTR_s00002p00269880 Nutrient uptake.sulfur assimilation.sulfate assimilation.sulfite reductase SIR, evm_27.TU.AmTr_v1.0_scaffold00002.562 0.900518961628645 68 AMTR_s00077p00105110 DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00077.90 0.89939765568321 22 AMTR_s00016p00219550 evm_27.TU.AmTr_v1.0_scaffold00016.199 0.8986572208783439 21 AMTR_s00085p00110520 evm_27.TU.AmTr_v1.0_scaffold00085.68 0.8979771894046265 12 AMTR_s00030p00088210 RNA biosynthesis.transcriptional activation.Trihelix transcription factor evm_27.TU.AmTr_v1.0_scaffold00030.34 0.8974223955901907 13 AMTR_s00001p00228610 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF244 protein evm_27.TU.AmTr_v1.0_scaffold00001.239 0.8965371126871301 14 AMTR_s00016p00206840 RNA processing.RNA modification.pseudouridylation.RluA-type RNA pseudouridine synthase evm_27.TU.AmTr_v1.0_scaffold00016.175 0.8955972952824175 42 AMTR_s00059p00159100 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.4-hydroxy-3-methylbut-2-enyl diphosphate reductase CLB6, ISPH, HDR, evm_27.TU.AmTr_v1.0_scaffold00059.146 0.8947695990420338 43 AMTR_s00020p00187990 evm_27.TU.AmTr_v1.0_scaffold00020.72 0.8932858309920556 28 AMTR_s00025p00127670 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-HCa-type E3 ligase DAL1, evm_27.TU.AmTr_v1.0_scaffold00025.120 0.8925615517454443 75 AMTR_s00007p00219480 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.uroporphyrinogen III decarboxylase HEME2, evm_27.TU.AmTr_v1.0_scaffold00007.207 0.8918171847967372 72 AMTR_s00047p00218860 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.FLN2 regulatory factor FLN2, evm_27.TU.AmTr_v1.0_scaffold00047.167 0.8911582911553305 95 AMTR_s00085p00119470 External stimuli response.biotic stress.pathogen effector.NLR effector receptor evm_27.TU.AmTr_v1.0_scaffold00085.75 0.890966203758769 21 AMTR_s00066p00198600 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.VIPP protein PTAC4, VIPP1, evm_27.TU.AmTr_v1.0_scaffold00066.264 0.890588675334084 78 AMTR_s00040p00181990 Neutral/alkaline invertase 3, chloroplastic OS=Oryza sativa subsp. japonica INV-E, At-A/N-InvE, evm_27.TU.AmTr_v1.0_scaffold00040.175 0.8900287529555253 41 AMTR_s00017p00253090 Protein modification.acetylation.sirtuin-type lysine deacetylase SRT2, AtSRT2, evm_27.TU.AmTr_v1.0_scaffold00017.263 0.8897904495208385 47 AMTR_s00058p00193720 Protein modification.dephosphorylation.tyrosine protein phosphatase (PTP) superfamily.dual-specificity phosphatase families.LSF phosphoglucan phosphatase LSF1, evm_27.TU.AmTr_v1.0_scaffold00058.193 0.8891158229898009 48 AMTR_s00117p00114400 Probable acyl-activating enzyme 16, chloroplastic OS=Arabidopsis thaliana AAE15, evm_27.TU.AmTr_v1.0_scaffold00117.48 0.8885983449808754 44 AMTR_s00061p00120110 Carbohydrate metabolism.starch metabolism.synthesis.ADP-glucose pyrophosphorylase ADG1, APS1, evm_27.TU.AmTr_v1.0_scaffold00061.96 0.8880948407782584 57 AMTR_s00001p00253330 evm_27.TU.AmTr_v1.0_scaffold00001.328 0.88785740340695 96 AMTR_s00029p00219050 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH7/9 component ftsh9, evm_27.TU.AmTr_v1.0_scaffold00029.331 0.8875128177088316 52 AMTR_s00109p00113060 Redox homeostasis.low-molecular-weight scavengers.tocopherol biosynthesis.tocopherol cyclase (VTE1/TC) ATSDX1, VTE1, evm_27.TU.AmTr_v1.0_scaffold00109.111 0.8867538207745878 73 AMTR_s00112p00137130 Solute transport.carrier-mediated transport.MFS superfamily.SP family.hexose transporter (SGB/GlcT-type) evm_27.TU.AmTr_v1.0_scaffold00112.35 0.8862603442315312 31 AMTR_s00083p00031040 Photosynthesis.photorespiration.aminotransferases.glutamate-glyoxylate transaminase GGAT1, GGT1, AOAT1, evm_27.TU.AmTr_v1.0_scaffold00083.7 0.8835329077396455 41 AMTR_s00078p00084050 evm_27.TU.AmTr_v1.0_scaffold00078.57 0.8814142234833946 80 AMTR_s00022p00154020 Enzyme classification.EC_1 oxidoreductases.EC_1.1 oxidoreductase acting on CH-OH group of donor evm_27.TU.AmTr_v1.0_scaffold00022.155 0.8807368052930968 59 AMTR_s00033p00159870 Uncharacterized methyltransferase At2g41040, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00033.105 0.8795546478856399 39 AMTR_s00092p00119050 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease HHOA, DEG5, DEGP5, evm_27.TU.AmTr_v1.0_scaffold00092.82 0.8792430340512336 40 AMTR_s00002p00029100 Cytoskeleton.cp-actin-dependent plastid movement.KAC accessory motility factor KCA2, KAC2, evm_27.TU.AmTr_v1.0_scaffold00002.13 0.878911055140926 49 AMTR_s00077p00168500 evm_27.TU.AmTr_v1.0_scaffold00077.183 0.8787963585313395 42 AMTR_s00126p00126070 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic22 component evm_27.TU.AmTr_v1.0_scaffold00126.65 0.8763651757487255 44 AMTR_s00022p00127970 evm_27.TU.AmTr_v1.0_scaffold00022.120 0.8751281454220953 46 AMTR_s00005p00266220 evm_27.TU.AmTr_v1.0_scaffold00005.229 0.8737519109863117 65 AMTR_s00023p00221340 Multi-process regulation.circadian clock.PRR time-of-day-dependent expressed repressor APRR7, PRR7, evm_27.TU.AmTr_v1.0_scaffold00023.165 0.8736867796943442 51 AMTR_s00115p00062270 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.Y3IP1 protein AtCEST, CEST, evm_27.TU.AmTr_v1.0_scaffold00115.3 0.872808583138148 54 AMTR_s00039p00197260 Cytoskeleton.microfilament network.actin polymerisation.Arp2/3 actin polymerization initiation complex.ArpC1 component ARPC1B, ARPC1, evm_27.TU.AmTr_v1.0_scaffold00039.162 0.872741983572476 55 AMTR_s00123p00013920 Coenzyme metabolism.tetrapyrrol biosynthesis.uroporphyrinogen III formation.uroporphyrinogen III synthase ATDUF3, DUF3, HEMD, UROS, ATUROS, evm_27.TU.AmTr_v1.0_scaffold00123.1 0.8725164074555375 56 AMTR_s00048p00155800 Probable GTP diphosphokinase RSH3, chloroplastic OS=Arabidopsis thaliana RSH3, AT-RSH3, ATRSH3, evm_27.TU.AmTr_v1.0_scaffold00048.111 0.872483511345501 57 AMTR_s00059p00161610 Protein DA1-related 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00059.151 0.8697089525602253 67 AMTR_s00002p00234380 evm_27.TU.AmTr_v1.0_scaffold00002.271 0.8692885023530055 69 AMTR_s00069p00176780 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen CYP704A2, evm_27.TU.AmTr_v1.0_scaffold00069.157 0.8691330084038583 98 AMTR_s00132p00112670 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll breakdown.red chlorophyll catabolite reductase (RCCR) ATRCCR, ACD2, evm_27.TU.AmTr_v1.0_scaffold00132.27 0.8690961149685649 76 AMTR_s00003p00129460 Putative GTP diphosphokinase RSH1, chloroplastic OS=Arabidopsis thaliana RSH1, ATRSH1, AT-RSH1, evm_27.TU.AmTr_v1.0_scaffold00003.96 0.8684377277100005 73 AMTR_s00005p00062400 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.PRDA1 FSD2-interacting factor evm_27.TU.AmTr_v1.0_scaffold00005.9 0.8675673541014707 76 AMTR_s00065p00031420 Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00065.13 0.8673033501950238 77 AMTR_s00001p00133790 evm_27.TU.AmTr_v1.0_scaffold00001.111 0.867235544286967 78 AMTR_s00077p00038260 Solute transport.carrier-mediated transport.MC-type solute transporter ER-ANT1, evm_27.TU.AmTr_v1.0_scaffold00077.19 0.8671150668044084 80 AMTR_s00010p00206450 Lipid metabolism.fatty acid synthesis.acetyl-CoA carboxylation.monomeric acetyl-CoA carboxylase EMB22, GK, AT-ACC1, ACC1, PAS3, evm_27.TU.AmTr_v1.0_scaffold00010.198 0.8665941872995214 81 AMTR_s00019p00236430 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.transfer phase.NFU1/2/3 component ATCNFU3, NFU3, evm_27.TU.AmTr_v1.0_scaffold00019.332 0.8662152055688619 100 AMTR_s00001p00259120 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL5 component evm_27.TU.AmTr_v1.0_scaffold00001.365 0.8658529381140944 85 AMTR_s00012p00252800 Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00012.262 0.8650420577416382 88 AMTR_s00056p00043140 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.CRS2-CAF splicing factor complexes.CAF component ATCAF1, CAF1, evm_27.TU.AmTr_v1.0_scaffold00056.26 0.8634057380612012 97 AMTR_s00046p00160890 RNA biosynthesis.transcriptional activation.BSD transcription factor evm_27.TU.AmTr_v1.0_scaffold00046.85 0.862653427938308 100