Sequence Description Alias PCC hrr AMTR_s00095p00031150 Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00095.12 0.9593445040493795 1 AMTR_s00011p00245550 Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00011.144 0.9386696031849192 2 AMTR_s00025p00060270 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.mTERF4 splicing factor evm_27.TU.AmTr_v1.0_scaffold00025.37 0.9169116866807162 3 AMTR_s00029p00034670 Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.16 0.9163340198417965 4 AMTR_s00001p00271550 Multi-process regulation.circadian clock.PRR time-of-day-dependent expressed repressor APRR5, PRR5, evm_27.TU.AmTr_v1.0_scaffold00001.491 0.9147401554505726 5 AMTR_s00001p00271570 Two-component response regulator-like PRR95 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00001.492 0.9018169859323497 6 AMTR_s00058p00051650 evm_27.TU.AmTr_v1.0_scaffold00058.23 0.9009077072728228 7 AMTR_s00048p00138890 Photosynthesis.calvin cycle.phosphoribulokinase PRK, evm_27.TU.AmTr_v1.0_scaffold00048.87 0.8992817837955102 33 AMTR_s00024p00220440 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.electron donor-binding subcomplex E.NdhU component evm_27.TU.AmTr_v1.0_scaffold00024.215 0.897686401359208 26 AMTR_s00065p00176540 Cellular respiration.glycolysis.cytosolic glycolysis.glyceraldehyde 3-phosphate dehydrogenase activities.NADP-dependent glyceraldehyde 3-phosphate dehydrogenase ALDH11A3, evm_27.TU.AmTr_v1.0_scaffold00065.146 0.8944604446068944 22 AMTR_s00004p00178250 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00004.203 0.8920627419171295 53 AMTR_s00003p00103190 Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana SLO1, evm_27.TU.AmTr_v1.0_scaffold00003.67 0.8918143779463857 12 AMTR_s00025p00156240 RNA biosynthesis.transcriptional activation.C2C2 superfamily.BBX/CONSTANS transcription factor CIA2, evm_27.TU.AmTr_v1.0_scaffold00025.176 0.8906824190792493 15 AMTR_s00115p00066030 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor CRR41 evm_27.TU.AmTr_v1.0_scaffold00115.4 0.8905983211349782 17 AMTR_s00024p00153080 Protein modification.phosphorylation.TKL kinase superfamily.G-Lectin kinase families.SD-2 kinase evm_27.TU.AmTr_v1.0_scaffold00024.107 0.8852900844227797 15 AMTR_s00149p00067730 evm_27.TU.AmTr_v1.0_scaffold00149.45 0.8839322162757282 29 AMTR_s00010p00259490 Coenzyme metabolism.thiamine pyrophosphate synthesis.hydroxymethylpyrimidine diphosphate synthesis.hydroxymethylpyrimidine phosphate synthase (ThiC) THIC, PY, evm_27.TU.AmTr_v1.0_scaffold00010.423 0.881295242833294 71 AMTR_s00067p00076830 Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00067.52 0.8806652566668345 18 AMTR_s00059p00056420 Phytohormones.brassinosteroid.synthesis.steroid 22-alpha-hydroxylase (DWF4) DWF4, SNP2, PSC1, CLM, SAV1, CYP90B1, evm_27.TU.AmTr_v1.0_scaffold00059.35 0.8773035122766981 19 AMTR_s00030p00229610 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor evm_27.TU.AmTr_v1.0_scaffold00030.182 0.8767556741633351 20 AMTR_s00076p00039590 Phytohormones.abscisic acid.synthesis.ABA1 zeaxanthin epoxidase ABA1, IBS3, ATABA1, ZEP, NPQ2, LOS6, ATZEP, evm_27.TU.AmTr_v1.0_scaffold00076.7 0.872757870817829 55 AMTR_s00001p00191590 Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00001.190 0.8709242119711015 22 AMTR_s00012p00255610 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase evm_27.TU.AmTr_v1.0_scaffold00012.291 0.8675984843255262 24 AMTR_s00029p00134700 PSBQ-2, PSII-Q, PSBQ, evm_27.TU.AmTr_v1.0_scaffold00029.153 0.8661037410128921 51 AMTR_s00001p00181860 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen CYP89A5, evm_27.TU.AmTr_v1.0_scaffold00001.175 0.8659946701709003 26 AMTR_s00063p00191490 Nutrient uptake.nitrogen assimilation.ammonium assimilation.glutamate synthase activities.Fd-dependent glutamate synthase GLU1, FD-GOGAT, GLS1, GLUS, evm_27.TU.AmTr_v1.0_scaffold00063.73 0.8650290064778184 54 AMTR_s00045p00209230 Protein translocation.chloroplast.outer envelope TOC translocation system.Toc90/Toc120/Toc132/Toc159 component PPI2, ATTOC159, TOC159, TOC160, TOC86, evm_27.TU.AmTr_v1.0_scaffold00045.285 0.8607573822076973 48 AMTR_s00065p00174200 evm_27.TU.AmTr_v1.0_scaffold00065.144 0.8603423597163842 29 AMTR_s00009p00227360 Solute transport.carrier-mediated transport.MFS superfamily.PHT4 phosphate transporter ANTR2, PHT4;4, evm_27.TU.AmTr_v1.0_scaffold00009.177 0.8583895143642385 32 AMTR_s00068p00072270 Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00068.29 0.856068151788036 36 AMTR_s00110p00042430 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp100 protein CLPB3, CLPB-P, APG6, evm_27.TU.AmTr_v1.0_scaffold00110.17 0.8545736702727199 93 AMTR_s00048p00229560 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group.TPT phosphometabolite transporter evm_27.TU.AmTr_v1.0_scaffold00048.224 0.8540183268323516 42 AMTR_s00099p00074160 Pentatricopeptide repeat-containing protein At1g02060, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00099.55 0.8509021272662926 50 AMTR_s00107p00109770 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH mitochondrial protease complexes.FtsH4/11 component FTSH11, evm_27.TU.AmTr_v1.0_scaffold00107.33 0.8508947862819263 78 AMTR_s00040p00174700 Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00040.163 0.8463066884026106 43 AMTR_s00046p00219150 Photosynthesis.photorespiration.serine hydroxymethyltransferase STM, SHM1, SHMT1, evm_27.TU.AmTr_v1.0_scaffold00046.151 0.845697290381622 85 AMTR_s00002p00249920 Jacalin-related lectin 3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.350 0.8448080787220639 46 AMTR_s00019p00118960 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic55 component TIC55-II, evm_27.TU.AmTr_v1.0_scaffold00019.95 0.8417678370561986 92 AMTR_s00099p00036710 Pentatricopeptide repeat-containing protein At1g71490 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00099.22 0.8403283074453433 52 AMTR_s00029p00123460 Rhodanese-like domain-containing protein 8, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.141 0.8380812550264177 55 AMTR_s00002p00268520 Pentatricopeptide repeat-containing protein At3g23020 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.537 0.8373101724378389 56 AMTR_s00019p00241340 ABC transporter I family member 17 OS=Arabidopsis thaliana AtSTAR1, NAP3, ATNAP3, evm_27.TU.AmTr_v1.0_scaffold00019.354 0.8363102262358031 58 AMTR_s00079p00193400 evm_27.TU.AmTr_v1.0_scaffold00079.122 0.8346138795778161 65 AMTR_s00024p00252690 Photosynthesis.CAM/C4 photosynthesis.phosphoenolpyruvate (PEP) carboxylase activity.PEP carboxylase ATPPC4, PPC4, evm_27.TU.AmTr_v1.0_scaffold00024.351 0.8337947663455674 66 AMTR_s00089p00073940 evm_27.TU.AmTr_v1.0_scaffold00089.34 0.8312584338129615 93 AMTR_s00003p00079190 External stimuli response.temperature.temperature sensors.PHY-B temperature sensor protein HY3, OOP1, PHYB, evm_27.TU.AmTr_v1.0_scaffold00003.45 0.8311910999902398 72 AMTR_s00012p00254790 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase evm_27.TU.AmTr_v1.0_scaffold00012.281 0.8307900269423575 99 AMTR_s00019p00088750 Protein TSS OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.66 0.8306312168070924 74 AMTR_s00106p00039260 Carbohydrate metabolism.mannose metabolism.phosphomannomutase evm_27.TU.AmTr_v1.0_scaffold00106.20 0.8296099452880775 77 AMTR_s00081p00063880 Protein modification.phosphorylation.AGC kinase superfamily.AGC-VIII kinase PID2, evm_27.TU.AmTr_v1.0_scaffold00081.20 0.8293684321153595 78 AMTR_s00096p00137440 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.monodehydroascorbate reductase (MDAR) ATMDAR4, MDAR4, evm_27.TU.AmTr_v1.0_scaffold00096.88 0.8282881871747273 84 AMTR_s00056p00209700 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor SIGC, SIG3, evm_27.TU.AmTr_v1.0_scaffold00056.200 0.8272791074414153 87 AMTR_s00044p00102360 Putative E3 ubiquitin-protein ligase LIN OS=Medicago truncatula evm_27.TU.AmTr_v1.0_scaffold00044.72 0.8270120137501871 88 AMTR_s00140p00105610 Photosynthesis.calvin cycle.NADPH-dependent malate dehydrogenase evm_27.TU.AmTr_v1.0_scaffold00140.51 0.8266760304637846 89 AMTR_s00033p00105380 Nutrient uptake.nitrogen assimilation.systemic nitrogen signalling.CEPR CEP-receptor kinase evm_27.TU.AmTr_v1.0_scaffold00033.48 0.8261426146106328 91