Sequence Description Alias PCC hrr AMTR_s00001p00253330 evm_27.TU.AmTr_v1.0_scaffold00001.328 0.937383486870975 3 AMTR_s00058p00171240 evm_27.TU.AmTr_v1.0_scaffold00058.156 0.9342800773205462 10 AMTR_s00067p00113950 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC5 component PTAC5, evm_27.TU.AmTr_v1.0_scaffold00067.91 0.9293948457196186 3 AMTR_s00001p00080980 Amino acid metabolism.biosynthesis.glutamate family.histidine.ATP phosphoribosyl transferase HISN1B, ATATP-PRT2, ATP-PRT2, evm_27.TU.AmTr_v1.0_scaffold00001.55 0.9282247110580848 4 AMTR_s00048p00223180 Protein biosynthesis.aminoacyl-tRNA synthetase activities.serine-tRNA ligase ATSRS, OVA7, SRS, evm_27.TU.AmTr_v1.0_scaffold00048.210 0.9175481196037591 16 AMTR_s00075p00091010 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.uroporphyrinogen III decarboxylase HEME1, evm_27.TU.AmTr_v1.0_scaffold00075.28 0.9161768719376087 13 AMTR_s00050p00032750 evm_27.TU.AmTr_v1.0_scaffold00050.4 0.916081418509506 7 AMTR_s00010p00259870 evm_27.TU.AmTr_v1.0_scaffold00010.430 0.9147332736783073 27 AMTR_s00066p00141740 Amino acid metabolism.biosynthesis.pyruvate family.pyruvate-derived amino acids.acetolactate synthase complex.regulatory subunit evm_27.TU.AmTr_v1.0_scaffold00066.141 0.9107463496213327 20 AMTR_s00008p00202090 RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00008.120 0.9106293510197716 18 AMTR_s00002p00236530 CDK5RAP1-like protein OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00002.279 0.9105425524849214 54 AMTR_s00005p00266220 evm_27.TU.AmTr_v1.0_scaffold00005.229 0.9099606096069536 12 AMTR_s00007p00267680 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp60 family.Hsp20 Hsp60-co-chaperone CPN21, ATCPN21, CHCPN10, CPN10, CPN20, evm_27.TU.AmTr_v1.0_scaffold00007.383 0.9099048148680818 13 AMTR_s00003p00257280 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00003.320 0.9087891236725062 46 AMTR_s00131p00054800 evm_27.TU.AmTr_v1.0_scaffold00131.33 0.9059338760799707 19 AMTR_s00068p00029180 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.ZDS zeta-carotene desaturase PDE181, ZDS, SPC1, evm_27.TU.AmTr_v1.0_scaffold00068.6 0.9037185026947436 67 AMTR_s00010p00251120 evm_27.TU.AmTr_v1.0_scaffold00010.357 0.9024406757050831 28 AMTR_s00033p00195130 Protein biosynthesis.aminoacyl-tRNA synthetase activities.cysteine-tRNA ligase SYCO ARATH, evm_27.TU.AmTr_v1.0_scaffold00033.156 0.9016309847431775 30 AMTR_s00027p00142670 Pyridoxal reductase, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00027.43 0.900356467999756 100 AMTR_s00025p00203820 Lipid metabolism.fatty acid synthesis.acetyl-CoA carboxylation.polymeric acetyl-CoA carboxylase complex.biotin carboxylase subunit CAC2, evm_27.TU.AmTr_v1.0_scaffold00025.261 0.8935951781303829 24 AMTR_s00010p00206450 Lipid metabolism.fatty acid synthesis.acetyl-CoA carboxylation.monomeric acetyl-CoA carboxylase EMB22, GK, AT-ACC1, ACC1, PAS3, evm_27.TU.AmTr_v1.0_scaffold00010.198 0.8930877559833584 22 AMTR_s00089p00093330 Protein biosynthesis.aminoacyl-tRNA synthetase activities.lysine-tRNA ligase OVA5, ATKRS-2, evm_27.TU.AmTr_v1.0_scaffold00089.48 0.8927730329138044 39 AMTR_s00016p00219550 evm_27.TU.AmTr_v1.0_scaffold00016.199 0.8921568898412032 28 AMTR_s00025p00170170 Probable plastid-lipid-associated protein 8, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00025.202 0.8910940668779995 26 AMTR_s00032p00091590 Coenzyme metabolism.tetrapyrrol biosynthesis.uroporphyrinogen III formation.porphobilinogen deaminase HEMC, evm_27.TU.AmTr_v1.0_scaffold00032.57 0.8888122031589849 28 AMTR_s00023p00012750 Solute transport.carrier-mediated transport.MOP superfamily.MATE family.metal-citrate complex transporter (FRD-type) evm_27.TU.AmTr_v1.0_scaffold00023.3 0.8884872137058942 52 AMTR_s00008p00241920 Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana 0.8883237319123406 62 AMTR_s00001p00173820 Pentatricopeptide repeat-containing protein At2g17033 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00001.164 0.8878406760837282 71 AMTR_s00029p00193780 Fructokinase-like 1, chloroplastic OS=Arabidopsis thaliana FLN1, evm_27.TU.AmTr_v1.0_scaffold00029.262 0.8877337041647616 96 AMTR_s00057p00151990 Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00057.138 0.8859472714422113 40 AMTR_s00224p00011500 Pentatricopeptide repeat-containing protein MRL1, chloroplastic OS=Arabidopsis thaliana MRL1, evm_27.TU.AmTr_v1.0_scaffold00224.3 0.8847439324779938 42 AMTR_s00058p00193720 Protein modification.dephosphorylation.tyrosine protein phosphatase (PTP) superfamily.dual-specificity phosphatase families.LSF phosphoglucan phosphatase LSF1, evm_27.TU.AmTr_v1.0_scaffold00058.193 0.8843620125474062 62 AMTR_s00019p00233430 Redox homeostasis.low-molecular-weight scavengers.tocopherol biosynthesis.homogentisate phytyltransferase (VTE2/HPT) HPT1, ATHPT, TPT1, VTE2, evm_27.TU.AmTr_v1.0_scaffold00019.323 0.8815554305706881 40 AMTR_s00088p00137910 Uncharacterized protein At5g50100, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00088.106 0.879926255323885 43 AMTR_s00031p00061040 Uncharacterized protein At5g03900, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00031.26 0.8792394632314936 100 AMTR_s00120p00041110 evm_27.TU.AmTr_v1.0_scaffold00120.11 0.8778102262138202 48 AMTR_s00057p00143260 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease DEGP2, evm_27.TU.AmTr_v1.0_scaffold00057.128 0.8777636845153859 95 AMTR_s00040p00124030 Pentatricopeptide repeat-containing protein At1g71420 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00040.90 0.8753737957678893 52 AMTR_s00092p00136000 Cell cycle.organelle machineries.DNA replication.genome stability maintenance.RecA-type recombinase evm_27.TU.AmTr_v1.0_scaffold00092.102 0.8743949119690374 56 AMTR_s00002p00128010 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP9/FSD2 component FSD2, evm_27.TU.AmTr_v1.0_scaffold00002.85 0.8741084491895112 58 AMTR_s00038p00234220 Haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00038.234 0.8738574287519657 82 AMTR_s00061p00050140 evm_27.TU.AmTr_v1.0_scaffold00061.26 0.8702735795695378 79 AMTR_s00059p00121300 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.chlorophyll b reductase complex.NOL component NOL, evm_27.TU.AmTr_v1.0_scaffold00059.95 0.8701445484386163 83 AMTR_s00126p00126070 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic22 component evm_27.TU.AmTr_v1.0_scaffold00126.65 0.869076807531974 71 AMTR_s00109p00098140 Lipid metabolism.fatty acid synthesis.mitochondrial Type II fatty acid synthase (mtFAS) system.malonyl-CoA synthetase (mtMCS) evm_27.TU.AmTr_v1.0_scaffold00109.86 0.8675673541014707 76 AMTR_s00175p00032740 Cell wall.pectin.rhamnogalacturonan I.modification and degradation.beta-galactosidase BGAL8, evm_27.TU.AmTr_v1.0_scaffold00175.8 0.8672641091424732 75 AMTR_s00012p00077460 Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum evm_27.TU.AmTr_v1.0_scaffold00012.34 0.866697209594989 78 AMTR_s00077p00156540 Serotonin N-acetyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica ATNSI, NSI, evm_27.TU.AmTr_v1.0_scaffold00077.160 0.8665003942421323 91 AMTR_s00102p00067140 Redox homeostasis.enzymatic reactive oxygen species scavengers.superoxide dismutase activities.copper/zinc superoxide dismutase CZSOD2, CSD2, evm_27.TU.AmTr_v1.0_scaffold00102.33 0.8646601428438244 85 AMTR_s00032p00226710 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.coproporphyrinogen III oxidase activities.HemF oxygen-dependent coproporphyrinogen III oxidase ATCPO-I, LIN2, HEMF1, evm_27.TU.AmTr_v1.0_scaffold00032.243 0.862119998985541 91 AMTR_s00013p00233820 evm_27.TU.AmTr_v1.0_scaffold00013.185 0.8620769935239903 93 AMTR_s00058p00177480 evm_27.TU.AmTr_v1.0_scaffold00058.167 0.8618855970312121 93 AMTR_s00002p00267110 Cell cycle.organelle machineries.DNA replication.single-stranded DNA (ssDNA) maintenance.OSB-type ssDNA-binding protein OSB1, evm_27.TU.AmTr_v1.0_scaffold00002.519 0.8614810649089889 95 AMTR_s00001p00259120 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL5 component evm_27.TU.AmTr_v1.0_scaffold00001.365 0.8614145810422634 96 AMTR_s00058p00194850 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.DXR 1-deoxy-D-xylulose 5-phosphate reductase DXR, PDE129, evm_27.TU.AmTr_v1.0_scaffold00058.194 0.8605797591850238 98