Sequence Description Alias PCC hrr AMTR_s00045p00209230 Protein translocation.chloroplast.outer envelope TOC translocation system.Toc90/Toc120/Toc132/Toc159 component PPI2, ATTOC159, TOC159, TOC160, TOC86, evm_27.TU.AmTr_v1.0_scaffold00045.285 0.9199343855849351 2 AMTR_s00007p00061550 RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor JKD, evm_27.TU.AmTr_v1.0_scaffold00007.32 0.9126376949951561 5 AMTR_s00097p00060630 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.LCY-b lycopene beta cyclase LYC, evm_27.TU.AmTr_v1.0_scaffold00097.13 0.9123447092934501 3 AMTR_s00132p00051080 Protein DJ-1 homolog C OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00132.13 0.9096233869372136 7 AMTR_s00045p00058890 evm_27.TU.AmTr_v1.0_scaffold00045.42 0.90414723334737 5 AMTR_s00071p00187330 Prolycopene isomerase, chloroplastic OS=Daucus carota evm_27.TU.AmTr_v1.0_scaffold00071.196 0.9037519205233405 26 AMTR_s00002p00100650 evm_27.TU.AmTr_v1.0_scaffold00002.59 0.9028767219085179 34 AMTR_s00013p00226690 Nucleotide metabolism.pyrimidines.ribonucleotide anabolism.carbamoyl phosphate synthetase dimer.large subunit CARB, evm_27.TU.AmTr_v1.0_scaffold00013.174 0.9020968729180647 8 AMTR_s00126p00110160 RNA processing.organelle machineries.RNA splicing.mitochondrial RNA splicing.group-II intron splicing.PMH RNA helicase PMH2, ATRH53, evm_27.TU.AmTr_v1.0_scaffold00126.53 0.9019670318664246 13 AMTR_s00003p00168720 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.RH3 basal splicing factor emb1138, evm_27.TU.AmTr_v1.0_scaffold00003.145 0.9013234253720832 60 AMTR_s00022p00070510 Protein modification.peptide maturation.plastid.SPP stromal processing peptidase evm_27.TU.AmTr_v1.0_scaffold00022.51 0.9010832919055104 47 AMTR_s00007p00251190 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor CRR6 CRR6, evm_27.TU.AmTr_v1.0_scaffold00007.284 0.8994148103473997 12 AMTR_s00004p00178250 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00004.203 0.8986924098238983 41 AMTR_s00106p00108310 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component VAR2, FTSH2, evm_27.TU.AmTr_v1.0_scaffold00106.79 0.8972926837266653 44 AMTR_s00002p00266310 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.glutathione reductase (GR) GR, EMB2360, ATGR2, evm_27.TU.AmTr_v1.0_scaffold00002.507 0.8947506577079385 41 AMTR_s00061p00145930 Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00061.130 0.893536747391201 16 AMTR_s00029p00096200 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3A complex.SF3A1 component evm_27.TU.AmTr_v1.0_scaffold00029.89 0.893466716140902 17 AMTR_s00029p00219050 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH7/9 component ftsh9, evm_27.TU.AmTr_v1.0_scaffold00029.331 0.8929286787656695 42 AMTR_s00008p00109510 Translation factor GUF1 homolog, chloroplastic OS=Vitis vinifera evm_27.TU.AmTr_v1.0_scaffold00008.45 0.8913099656361876 53 AMTR_s00003p00079190 External stimuli response.temperature.temperature sensors.PHY-B temperature sensor protein HY3, OOP1, PHYB, evm_27.TU.AmTr_v1.0_scaffold00003.45 0.8912077208836537 20 AMTR_s00065p00139210 Solute transport.channels.CorA family.MRS/MGT metal cation transporter MGT4, MRS2-3, evm_27.TU.AmTr_v1.0_scaffold00065.95 0.8907951168577871 21 AMTR_s00047p00085560 Solute transport.channels.VIC superfamily.voltage-gated potassium cation channel (TPK/KCO-type) TPK1, ATKCO1, ATTPK1, KCO1, evm_27.TU.AmTr_v1.0_scaffold00047.33 0.8891716347743255 22 AMTR_s00012p00154880 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.ALB3 component ALB3, evm_27.TU.AmTr_v1.0_scaffold00012.92 0.8884679997659164 90 AMTR_s00040p00181990 Neutral/alkaline invertase 3, chloroplastic OS=Oryza sativa subsp. japonica INV-E, At-A/N-InvE, evm_27.TU.AmTr_v1.0_scaffold00040.175 0.8883188579371826 48 AMTR_s00016p00164160 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp100 protein HSP93-V, DCA1, ATHSP93-V, CLPC, CLPC1, evm_27.TU.AmTr_v1.0_scaffold00016.120 0.8881165418957809 31 AMTR_s00035p00023210 Carbohydrate metabolism.gluconeogenesis.pyruvate orthophosphate dikinase activity.regulatory pyruvate orthophosphate dikinase kinase ATRP1, RP1, evm_27.TU.AmTr_v1.0_scaffold00035.4 0.8874635271322071 26 AMTR_s00126p00013900 Protein modification.peptide maturation.mitochondrion.PreP organellar peptidasome ATPREP1, PREP1, ATZNMP, evm_27.TU.AmTr_v1.0_scaffold00126.1 0.8865314228073202 35 AMTR_s00058p00164840 Vesicle trafficking.endomembrane trafficking.PI3-kinase vesicle nucleation complex I/II.VPS15 regulatory component evm_27.TU.AmTr_v1.0_scaffold00058.147 0.8846446251882093 28 AMTR_s00021p00200120 evm_27.TU.AmTr_v1.0_scaffold00021.166 0.8815973937179254 60 AMTR_s00174p00049820 Probable methyltransferase PMT9 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00174.18 0.8793154023622913 41 AMTR_s00024p00252690 Photosynthesis.CAM/C4 photosynthesis.phosphoenolpyruvate (PEP) carboxylase activity.PEP carboxylase ATPPC4, PPC4, evm_27.TU.AmTr_v1.0_scaffold00024.351 0.8782539122589442 31 AMTR_s00092p00083700 Pentatricopeptide repeat-containing protein At3g59040 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.44 0.8772618260490183 32 AMTR_s00002p00270990 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll breakdown.chlorophyllase (CLH) CLH2, ATCLH2, evm_27.TU.AmTr_v1.0_scaffold00002.603 0.8767746992227513 33 AMTR_s00059p00159100 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.4-hydroxy-3-methylbut-2-enyl diphosphate reductase CLB6, ISPH, HDR, evm_27.TU.AmTr_v1.0_scaffold00059.146 0.8766053615271151 95 AMTR_s00079p00116430 Synaptotagmin-5 OS=Arabidopsis thaliana NTMC2T3, SYTF, NTMC2TYPE3, ATSYTF, evm_27.TU.AmTr_v1.0_scaffold00079.44 0.8753193391630758 35 AMTR_s00140p00105610 Photosynthesis.calvin cycle.NADPH-dependent malate dehydrogenase evm_27.TU.AmTr_v1.0_scaffold00140.51 0.8742195634674523 36 AMTR_s00058p00051650 evm_27.TU.AmTr_v1.0_scaffold00058.23 0.8730482229553893 37 AMTR_s00064p00187430 GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00064.82 0.8723475329981347 38 AMTR_s00002p00029100 Cytoskeleton.cp-actin-dependent plastid movement.KAC accessory motility factor KCA2, KAC2, evm_27.TU.AmTr_v1.0_scaffold00002.13 0.8719193518269178 69 AMTR_s00166p00060690 RNA processing.organelle machineries.RNA editing.plastidial RNA editing.CP31 RNA editing factor ATRBP31, CP31, ATRBP33, RBP31, evm_27.TU.AmTr_v1.0_scaffold00166.36 0.8716343029324611 40 AMTR_s00132p00065700 RNA biosynthesis.transcriptional activation.bZIP superfamily.bZIP transcription factor ABF2, ATAREB1, AREB1, evm_27.TU.AmTr_v1.0_scaffold00132.19 0.8709813656921844 41 AMTR_s00109p00129480 Protein biosynthesis.organelle translation machineries.translation elongation.EF-Ts elongation factor emb2726, evm_27.TU.AmTr_v1.0_scaffold00109.135 0.8687199784358516 89 AMTR_s00003p00129460 Putative GTP diphosphokinase RSH1, chloroplastic OS=Arabidopsis thaliana RSH1, ATRSH1, AT-RSH1, evm_27.TU.AmTr_v1.0_scaffold00003.96 0.8668449329313209 44 AMTR_s00019p00027190 APO protein 2, chloroplastic OS=Arabidopsis thaliana emb1629, APO2, evm_27.TU.AmTr_v1.0_scaffold00019.6 0.8667189891532553 45 AMTR_s00019p00241340 ABC transporter I family member 17 OS=Arabidopsis thaliana AtSTAR1, NAP3, ATNAP3, evm_27.TU.AmTr_v1.0_scaffold00019.354 0.8651002249021995 46 AMTR_s00002p00233660 GTP-binding protein At3g49725, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.269 0.8643039020906883 85 AMTR_s00012p00254100 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase evm_27.TU.AmTr_v1.0_scaffold00012.273 0.86343273043328 91 AMTR_s00110p00042430 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp100 protein CLPB3, CLPB-P, APG6, evm_27.TU.AmTr_v1.0_scaffold00110.17 0.8632681651670354 78 AMTR_s00039p00160690 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb28 protein PSB28, evm_27.TU.AmTr_v1.0_scaffold00039.114 0.8608038701180042 88 AMTR_s00047p00149040 Probable acyl-activating enzyme 1, peroxisomal OS=Arabidopsis thaliana AAE1, evm_27.TU.AmTr_v1.0_scaffold00047.69 0.8599067948745025 55 AMTR_s00032p00061960 Protein modification.phosphorylation.CMGC kinase superfamily.cyclin-dependent kinase families.CDKC kinase CDKC;1, evm_27.TU.AmTr_v1.0_scaffold00032.39 0.8590984540125564 87 AMTR_s00039p00159460 evm_27.TU.AmTr_v1.0_scaffold00039.112 0.8581789310157675 60 AMTR_s00011p00245550 Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00011.144 0.8574260030416935 63 AMTR_s00019p00088750 Protein TSS OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.66 0.85727029398514 63 AMTR_s00001p00232760 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component FTSH5, VAR1, evm_27.TU.AmTr_v1.0_scaffold00001.249 0.8572293220037541 94 AMTR_s00022p00242310 Protein modification.peptide maturation.plastid.CtpA carboxy-terminal processing peptidase evm_27.TU.AmTr_v1.0_scaffold00022.351 0.8566703613546249 75 AMTR_s00066p00165410 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen CYP81D5, evm_27.TU.AmTr_v1.0_scaffold00066.180 0.8542081265062726 70 AMTR_s00044p00231480 Protein degradation.peptidase families.metallopeptidase activities.aminopeptidase activities.M24 methionyl aminopeptidase (MAP1) MAP1C, MAP1B, evm_27.TU.AmTr_v1.0_scaffold00044.254 0.8530689999206054 71 AMTR_s00147p00070270 Cytoskeleton.cp-actin-dependent plastid movement.CHUP motility factor CHUP1, evm_27.TU.AmTr_v1.0_scaffold00147.32 0.8522749042395207 72 AMTR_s00071p00117740 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp70 family.DnaK protein cpHsc70-1, evm_27.TU.AmTr_v1.0_scaffold00071.92 0.8522497757769658 85 AMTR_s00009p00268340 Protein degradation.peptidase families.serine-type peptidase activities.LON protease evm_27.TU.AmTr_v1.0_scaffold00009.422 0.8519558498913319 74 AMTR_s00019p00118960 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic55 component TIC55-II, evm_27.TU.AmTr_v1.0_scaffold00019.95 0.8514018057118714 76 AMTR_s00109p00047950 Solute transport.carrier-mediated transport.TOC superfamily.TSUP transport protein evm_27.TU.AmTr_v1.0_scaffold00109.34 0.8508947862819263 78 AMTR_s00021p00200760 RNA biosynthesis.transcriptional activation.B3 superfamily.ARF transcription factor ARF4, evm_27.TU.AmTr_v1.0_scaffold00021.168 0.8496918465620433 84 AMTR_s00001p00271570 Two-component response regulator-like PRR95 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00001.492 0.8489092538997974 89 AMTR_s00044p00102360 Putative E3 ubiquitin-protein ligase LIN OS=Medicago truncatula evm_27.TU.AmTr_v1.0_scaffold00044.72 0.8478480642381717 93 AMTR_s00055p00213550 Polyamine metabolism.spermidine/spermine.degradation.polyamine oxidase APAO, ATPAO1, PAO1, evm_27.TU.AmTr_v1.0_scaffold00055.158 0.8472723644867957 94 AMTR_s00001p00263390 Protein biosynthesis.aminoacyl-tRNA synthetase activities.proline-tRNA ligase OVA6, PRORS1, evm_27.TU.AmTr_v1.0_scaffold00001.393 0.8466843116486819 95 AMTR_s00061p00145890 evm_27.TU.AmTr_v1.0_scaffold00061.129 0.8461291434990582 98