Sequence Description Alias PCC hrr AMTR_s00046p00170580 RNA processing.RNA decay.Nonsense-Mediated mRNA Decay (NMD).SMG7 protein SMG7, evm_27.TU.AmTr_v1.0_scaffold00046.93 0.9103427575797673 1 AMTR_s00066p00134410 FRIGIDA-like protein 3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.129 0.9038322500690072 5 AMTR_s00071p00153290 evm_27.TU.AmTr_v1.0_scaffold00071.140 0.8887664447460442 3 AMTR_s00032p00053220 Phytohormones.ethylene.perception and signal transduction.ETR/ERS-type receptor protein ETR, ETR1, EIN1, AtETR1, evm_27.TU.AmTr_v1.0_scaffold00032.33 0.8866200673776142 7 AMTR_s00004p00270220 evm_27.TU.AmTr_v1.0_scaffold00004.293 0.8732845914467458 12 AMTR_s00058p00188470 Protein translocation.nucleus.nucleocytoplasmic transport.karyopherin beta transport receptors.IMB1 import karyopherin evm_27.TU.AmTr_v1.0_scaffold00058.186 0.8732002507825759 8 AMTR_s00119p00117410 RNA biosynthesis.transcriptional activation.EIL (EIN3-like) transcription factor EIL1, AtEIL1, evm_27.TU.AmTr_v1.0_scaffold00119.91 0.8723663423305514 8 AMTR_s00004p00045050 FRIGIDA-like protein 4a OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00004.28 0.8595094231369743 12 AMTR_s00077p00052030 Protein modification.phosphorylation.TKL kinase superfamily.MAP3K-RAF kinase 0.8586554952317188 9 AMTR_s00065p00171490 RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.Fip1 component FIP1[V], ATFIP1[V], FIPS5, ATFIPS5, evm_27.TU.AmTr_v1.0_scaffold00065.140 0.8556922775634108 10 AMTR_s00057p00208300 evm_27.TU.AmTr_v1.0_scaffold00057.251 0.8520953794278108 11 AMTR_s00068p00082940 Protein biosynthesis.translation initiation.mRNA loading.4EHP RNA-cap-binding factor NCBP, evm_27.TU.AmTr_v1.0_scaffold00068.38 0.8474988062651981 12 AMTR_s00071p00180880 MACPF domain-containing protein At4g24290 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00071.184 0.8455789964663722 24 AMTR_s00078p00155240 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).SF1 pre-mRNA splicing factor evm_27.TU.AmTr_v1.0_scaffold00078.136 0.8440590313186669 45 AMTR_s00009p00235710 Protein modification.phosphorylation.TKL kinase superfamily.RLCK-IX kinase families.RLCK-IXb kinase evm_27.TU.AmTr_v1.0_scaffold00009.195 0.8440019759991403 15 AMTR_s00147p00043750 Protein translocation.nucleus.nucleocytoplasmic transport.importin alpha adaptor proteins IMPA-1, IMPA1, AT-IMP, ATKAP ALPHA, AIMP ALPHA, evm_27.TU.AmTr_v1.0_scaffold00147.17 0.8421178536835782 44 AMTR_s00044p00145170 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.U-Box E3 ligase activities.PUB-type PUB44, SAUL1, ATPUB44, evm_27.TU.AmTr_v1.0_scaffold00044.147 0.8417736211945097 17 AMTR_s00059p00094000 DNA damage response.DNA repair mechanisms.base excision repair (BER).apurinic/apyrimidinic (AP) endonuclease activities.ARP AP-endonuclease ARP, evm_27.TU.AmTr_v1.0_scaffold00059.68 0.8377197457717359 18 AMTR_s00142p00049490 Nutrient uptake.phosphorus assimilation.phosphate signalling.PHR1 transcription factor evm_27.TU.AmTr_v1.0_scaffold00142.28 0.8373948245940066 19 AMTR_s00061p00057890 HAP8, evm_27.TU.AmTr_v1.0_scaffold00061.33 0.8360556321170818 40 AMTR_s00111p00140620 RGG repeats nuclear RNA binding protein A (Fragment) OS=Nicotiana tabacum evm_27.TU.AmTr_v1.0_scaffold00111.120 0.833013767821912 22 AMTR_s00049p00211440 Vesicle trafficking.autophagosome formation.cargo recruitment.NBR1 autophagic adapter protein evm_27.TU.AmTr_v1.0_scaffold00049.238 0.832816077476646 30 AMTR_s00019p00230710 External stimuli response.light.UV-A/blue light.zeitlupe-mediated photoperception.ADO-type photoreceptor LKP1, ADO1, ZTL, FKL2, evm_27.TU.AmTr_v1.0_scaffold00019.314 0.832127940383261 24 AMTR_s00048p00164020 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-HCa-type E3 ligase evm_27.TU.AmTr_v1.0_scaffold00048.117 0.8311468172893341 29 AMTR_s00004p00270260 Protein modification.phosphorylation.TKL kinase superfamily.MAP3K-RAF kinase evm_27.TU.AmTr_v1.0_scaffold00004.294 0.8309460429744538 26 AMTR_s00022p00088470 evm_27.TU.AmTr_v1.0_scaffold00022.69 0.8287732476174361 40 AMTR_s00056p00188870 Clathrin interactor EPSIN 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00056.171 0.8287302226898745 28 AMTR_s00099p00111060 evm_27.TU.AmTr_v1.0_scaffold00099.94 0.828454566158187 29 AMTR_s00024p00167880 Coenzyme metabolism.tetrahydrofolate synthesis.tetrahydrofolate (THF) interconversions.10-formyl-THF synthetase THFS, evm_27.TU.AmTr_v1.0_scaffold00024.123 0.8260541486494609 30 AMTR_s00009p00268130 evm_27.TU.AmTr_v1.0_scaffold00009.416 0.8248244434622066 31 AMTR_s00004p00073360 ECT2, evm_27.TU.AmTr_v1.0_scaffold00004.54 0.8237407039024545 39 AMTR_s00013p00198120 Vesicle trafficking.target membrane tethering.Exocyst complex.EXO70 component ATEXO70F1, EXO70F1, evm_27.TU.AmTr_v1.0_scaffold00013.132 0.820549869625332 71 AMTR_s00025p00215680 Protein modification.phosphorylation.TKL kinase superfamily.MAP3K-RAF kinase evm_27.TU.AmTr_v1.0_scaffold00025.292 0.8205040371458114 71 AMTR_s00029p00219930 RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor SE, evm_27.TU.AmTr_v1.0_scaffold00029.336 0.8204431172685024 87 AMTR_s00049p00063500 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPP Fe-Zn-dependent phosphatase families.PP2A phosphatase complexes.B1-type regulatory component ATB' GAMMA, evm_27.TU.AmTr_v1.0_scaffold00049.40 0.8187448485743617 81 AMTR_s00045p00143830 evm_27.TU.AmTr_v1.0_scaffold00045.152 0.8147813460886806 39 AMTR_s02191p00008430 evm_27.TU.AmTr_v1.0_scaffold02191.1 0.8131260101054534 100 AMTR_s00038p00173360 RNA biosynthesis.transcriptional activation.CAMTA transcription factor CAMTA3, SR1, evm_27.TU.AmTr_v1.0_scaffold00038.113 0.8118115183596856 55 AMTR_s00060p00187100 F-box protein SKIP28 OS=Arabidopsis thaliana MEE11, evm_27.TU.AmTr_v1.0_scaffold00060.123 0.8104553950095221 78 AMTR_s00090p00122120 Amino acid metabolism.degradation.aromatic amino acid.tyrosine.fumarylacetoacetate hydrolase evm_27.TU.AmTr_v1.0_scaffold00090.61 0.8104016073797782 45 AMTR_s00110p00098100 evm_27.TU.AmTr_v1.0_scaffold00110.59 0.8102989681546856 46 AMTR_s00145p00075460 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter PGP20, evm_27.TU.AmTr_v1.0_scaffold00145.27 0.8097873858228797 90 AMTR_s00055p00167390 Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase activities.A-class RAB GTPase ATRABA5C, ARA4, ARA-4, RABA5C, ATRAB11F, evm_27.TU.AmTr_v1.0_scaffold00055.87 0.8083484855305341 48 AMTR_s00154p00032290 Vesicle trafficking.target membrane tethering.Exocyst complex.EXO70 component ATEXO70F1, EXO70F1, evm_27.TU.AmTr_v1.0_scaffold00154.13 0.8082961898027473 49 AMTR_s00065p00205690 Protein degradation.peptidase families.cysteine-type peptidase activities.ubiquitin-specific protease UBP23, evm_27.TU.AmTr_v1.0_scaffold00065.194 0.807711826522241 51 AMTR_s00017p00253050 Protein modification.phosphorylation.TKL kinase superfamily.RKF3 kinase evm_27.TU.AmTr_v1.0_scaffold00017.262 0.8072775485463751 54 AMTR_s00095p00122180 Protein modification.protein folding and quality control.RAC ribosome-associated chaperone complex.ZRF Hsp40-chaperone component evm_27.TU.AmTr_v1.0_scaffold00095.75 0.8055905489847079 62 AMTR_s00030p00173920 RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.BEL transcription factor EDA29, BLH1, evm_27.TU.AmTr_v1.0_scaffold00030.108 0.805523612645919 54 AMTR_s00103p00147670 evm_27.TU.AmTr_v1.0_scaffold00103.105 0.8055074611465253 55 AMTR_s00069p00158470 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN11 regulatory component evm_27.TU.AmTr_v1.0_scaffold00069.131 0.8054578494076396 97 AMTR_s00069p00055450 COMPASS-like H3K4 histone methylase component WDR5A OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00069.33 0.8045726806799431 58 AMTR_s00067p00203630 Protein biosynthesis.translation initiation.mRNA loading.eIF-iso4F unwinding complex.eIF-iso4E component LSP, LSP1, EIF(ISO)4E, EIF4E2, eIFiso4E, evm_27.TU.AmTr_v1.0_scaffold00067.221 0.8032225331952143 60 AMTR_s00012p00118890 evm_27.TU.AmTr_v1.0_scaffold00012.60 0.8021514713768128 61 AMTR_s00068p00196240 ECT8, evm_27.TU.AmTr_v1.0_scaffold00068.160 0.8018451507562899 64 AMTR_s00136p00114090 Chromatin organisation.histone chaperone activities.NAP-type histone chaperone NFA03, NFA3, NAP1;3, evm_27.TU.AmTr_v1.0_scaffold00136.63 0.8009799777977686 67 AMTR_s00036p00168840 Multi-process regulation.circadian clock.evening element regulation.Evening complex (EC).ELF3 component ELF3, PYK20, evm_27.TU.AmTr_v1.0_scaffold00036.83 0.7985422891118883 66 AMTR_s00001p00257700 evm_27.TU.AmTr_v1.0_scaffold00001.352 0.7985175244961844 67 AMTR_s00067p00143520 Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase evm_27.TU.AmTr_v1.0_scaffold00067.135 0.7959280320271762 68 AMTR_s00021p00214440 Vesicle trafficking.endomembrane trafficking.protein recycling.deubiquitination.BRO1 deubiquitinase recruiting protein evm_27.TU.AmTr_v1.0_scaffold00021.191 0.7945645778697518 70 AMTR_s00013p00238320 evm_27.TU.AmTr_v1.0_scaffold00013.196 0.7940041468254448 72 AMTR_s00056p00188580 Clathrin interactor EPSIN 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00056.170 0.7915082935843901 76 AMTR_s00135p00069650 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.CUL3-BTB E3 ligase complexes.BTB/POZ substrate adaptor components.NPH3 component RPT3, NPH3, JK218, evm_27.TU.AmTr_v1.0_scaffold00135.33 0.7914288090173596 77 AMTR_s00071p00019220 Protein modification.phosphorylation.STE kinase superfamily.MAP3K-MEKK kinase MAP3KA, MAPKKK3, evm_27.TU.AmTr_v1.0_scaffold00071.8 0.789413475413638 81 AMTR_s00080p00099010 evm_27.TU.AmTr_v1.0_scaffold00080.36 0.7871272558986351 84 AMTR_s00029p00202030 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase evm_27.TU.AmTr_v1.0_scaffold00029.286 0.7865059263881756 86 AMTR_s00019p00169230 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U4/U6 U5 small nuclear ribonucleoprotein particle (snRNP).PRPF3 snRNP-associated protein evm_27.TU.AmTr_v1.0_scaffold00019.168 0.786066119812434 88 AMTR_s00034p00071480 Ankyrin repeat-containing protein ITN1 OS=Arabidopsis thaliana ITN1, evm_27.TU.AmTr_v1.0_scaffold00034.17 0.7858020596323798 89 AMTR_s00174p00040410 Protein modification.dephosphorylation.tyrosine protein phosphatase (PTP) superfamily.dual-specificity phosphatase families.MAP-kinase phosphatase ATMKP1, MKP1, evm_27.TU.AmTr_v1.0_scaffold00174.16 0.7854377330495105 90 AMTR_s00041p00118190 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.U-Box E3 ligase activities.PUB-type evm_27.TU.AmTr_v1.0_scaffold00041.82 0.7846064305245367 92