Sequence Description Alias PCC hrr AMTR_s00059p00156080 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCS cytochrome f/c6 maturation system (system II).CcsB component evm_27.TU.AmTr_v1.0_scaffold00059.142 0.9442228723692705 7 AMTR_s00055p00165940 Protein biosynthesis.aminoacyl-tRNA synthetase activities.threonine-tRNA ligase EMB2761, evm_27.TU.AmTr_v1.0_scaffold00055.86 0.9276146526487532 7 AMTR_s00029p00225980 Solute transport.carrier-mediated transport.MFS superfamily.PHT4 phosphate transporter ANTR2, PHT4;4, evm_27.TU.AmTr_v1.0_scaffold00029.352 0.9262875377104509 8 AMTR_s00044p00143330 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.LPA3 protein LPA3, evm_27.TU.AmTr_v1.0_scaffold00044.141 0.9210841919554993 19 AMTR_s00049p00176170 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.regulation.CbbY xylulose-1,5-bisphosphate phosphatase evm_27.TU.AmTr_v1.0_scaffold00049.168 0.9169283497316634 25 AMTR_s00106p00046740 Protein biosynthesis.aminoacyl-tRNA synthetase activities.leucine-tRNA ligase EMB2369, evm_27.TU.AmTr_v1.0_scaffold00106.25 0.9142100733240063 31 AMTR_s00099p00159350 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll breakdown.chlorophyll dephytylase (CLD) evm_27.TU.AmTr_v1.0_scaffold00099.158 0.9138940969710906 20 AMTR_s00059p00166490 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic62 component evm_27.TU.AmTr_v1.0_scaffold00059.157 0.912987705808007 21 AMTR_s00071p00199450 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCD transporter evm_27.TU.AmTr_v1.0_scaffold00071.217 0.9113086347496786 46 AMTR_s00001p00203320 D-ribulose kinase OS=Arabidopsis thaliana XK1, XK-1, evm_27.TU.AmTr_v1.0_scaffold00001.204 0.91095259790519 24 AMTR_s00002p00254720 Solute transport.channels.CorA family.MRS/MGT metal cation transporter MGT10, GMN10, MRS2-11, ATMGT10, evm_27.TU.AmTr_v1.0_scaffold00002.387 0.9106777580847485 13 AMTR_s00025p00248060 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor SIGD, SIG4, evm_27.TU.AmTr_v1.0_scaffold00025.401 0.9085696434551784 19 AMTR_s00142p00060790 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.transfer phase.HCF101 component HCF101, evm_27.TU.AmTr_v1.0_scaffold00142.34 0.9054932064258504 43 AMTR_s00023p00186390 External stimuli response.light.UV-A/blue light.phototropin-mediated photoperception.phototropin photoreceptor RPT1, PHOT1, NPH1, JK224, evm_27.TU.AmTr_v1.0_scaffold00023.124 0.9044830401608432 23 AMTR_s00007p00156370 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.chlorophyll synthase ChlG CHLG, G4, ATG4, evm_27.TU.AmTr_v1.0_scaffold00007.117 0.9042533711757744 30 AMTR_s00020p00012640 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea evm_27.TU.AmTr_v1.0_scaffold00020.3 0.903519958797343 68 AMTR_s00024p00130820 evm_27.TU.AmTr_v1.0_scaffold00024.77 0.9031843283672708 30 AMTR_s00056p00209700 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor SIGC, SIG3, evm_27.TU.AmTr_v1.0_scaffold00056.200 0.9016092129104372 18 AMTR_s00006p00260480 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp60 family.Hsp60 protein evm_27.TU.AmTr_v1.0_scaffold00006.222 0.9000751608195078 35 AMTR_s00009p00072720 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor SIGF, SIG6, SOLDAT8, ATSIG6, evm_27.TU.AmTr_v1.0_scaffold00009.21 0.9000687163529347 65 AMTR_s00066p00198600 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.VIPP protein PTAC4, VIPP1, evm_27.TU.AmTr_v1.0_scaffold00066.264 0.8997451067549875 48 AMTR_s00019p00236430 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.transfer phase.NFU1/2/3 component ATCNFU3, NFU3, evm_27.TU.AmTr_v1.0_scaffold00019.332 0.8981147811607089 39 AMTR_s00044p00085200 Probable plastid-lipid-associated protein 12, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00044.57 0.8976549696049261 23 AMTR_s00044p00116170 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00044.90 0.8975505832839522 30 AMTR_s00049p00119540 Redox homeostasis.chloroplast redox homeostasis.F-type thioredoxin ATF1, TRXF1, evm_27.TU.AmTr_v1.0_scaffold00049.94 0.896986984281755 25 AMTR_s00019p00208640 Pentatricopeptide repeat-containing protein At5g10690 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.251 0.8969058862576597 35 AMTR_s00122p00077720 Photosynthesis.photorespiration.glycerate kinase evm_27.TU.AmTr_v1.0_scaffold00122.28 0.8962174168315039 48 AMTR_s00007p00219480 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.uroporphyrinogen III decarboxylase HEME2, evm_27.TU.AmTr_v1.0_scaffold00007.207 0.8953608835749493 59 AMTR_s00002p00267790 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex B.PnsB5/NDH18 component NDH18, evm_27.TU.AmTr_v1.0_scaffold00002.530 0.8949014264374733 29 AMTR_s00092p00109950 Homeobox-DDT domain protein RLT3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.68 0.8945091691352349 30 AMTR_s00014p00133450 Bifunctional nuclease 1 OS=Arabidopsis thaliana BBD1, ATBBD1, evm_27.TU.AmTr_v1.0_scaffold00014.49 0.8940696432929711 31 AMTR_s00023p00232870 Pentatricopeptide repeat-containing protein At5g02830, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00023.190 0.8938623176198645 54 AMTR_s00103p00115980 Protein TAB2 homolog, chloroplastic OS=Arabidopsis thaliana ATAB2, evm_27.TU.AmTr_v1.0_scaffold00103.69 0.8928411806120248 44 AMTR_s00099p00023240 evm_27.TU.AmTr_v1.0_scaffold00099.10 0.8927347596178873 34 AMTR_s00055p00172380 evm_27.TU.AmTr_v1.0_scaffold00055.89 0.8914935770436294 35 AMTR_s00101p00054450 evm_27.TU.AmTr_v1.0_scaffold00101.26 0.8911202894411256 36 AMTR_s00078p00073300 evm_27.TU.AmTr_v1.0_scaffold00078.44 0.8907177407347199 37 AMTR_s00077p00134480 Protein modification.phosphorylation.CMGC kinase superfamily.STN kinase STN8, evm_27.TU.AmTr_v1.0_scaffold00077.129 0.8905679806985534 54 AMTR_s00045p00200960 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.LPA1 protein LPA1, evm_27.TU.AmTr_v1.0_scaffold00045.260 0.8898805769218823 39 AMTR_s00171p00047960 evm_27.TU.AmTr_v1.0_scaffold00171.29 0.8879470099390074 41 AMTR_s00006p00257020 External stimuli response.light.UV-A/blue light.cryptochrome-mediated photoperception.CIB transcriptional regulator evm_27.TU.AmTr_v1.0_scaffold00006.196 0.8871945993047644 41 AMTR_s00025p00248100 Probable transmembrane GTPase FZO-like, chloroplastic OS=Arabidopsis thaliana FZL, evm_27.TU.AmTr_v1.0_scaffold00025.402 0.8870332629369261 46 AMTR_s00061p00120110 Carbohydrate metabolism.starch metabolism.synthesis.ADP-glucose pyrophosphorylase ADG1, APS1, evm_27.TU.AmTr_v1.0_scaffold00061.96 0.886480689376331 59 AMTR_s00025p00146930 Carbohydrate metabolism.gluconeogenesis.pyruvate orthophosphate dikinase activity.pyruvate orthophosphate dikinase PPDK, evm_27.TU.AmTr_v1.0_scaffold00025.163 0.8855564770653895 44 AMTR_s00009p00265580 DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00009.383 0.8854623983844858 71 AMTR_s00006p00258450 Coenzyme metabolism.phylloquinone synthesis.multifunctional phylloquinone synthesis protein (PHYLLO) evm_27.TU.AmTr_v1.0_scaffold00006.206 0.8853671417377934 58 AMTR_s00010p00265920 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex B.PnsB4/NDF6 component NDF6, evm_27.TU.AmTr_v1.0_scaffold00010.515 0.8834649580900635 56 AMTR_s00021p00213260 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group.TPT phosphometabolite transporter TPT, APE2, evm_27.TU.AmTr_v1.0_scaffold00021.188 0.8834492598640116 48 AMTR_s00101p00041820 evm_27.TU.AmTr_v1.0_scaffold00101.13 0.8817274381554526 64 AMTR_s00002p00197820 RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.183 0.8812008495754515 63 AMTR_s00069p00137820 evm_27.TU.AmTr_v1.0_scaffold00069.102 0.8787123312463534 52 AMTR_s00039p00053980 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00039.21 0.8786306619570151 74 AMTR_s00039p00096400 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.7-hydroxymethyl chlorophyll(ide) a reductase evm_27.TU.AmTr_v1.0_scaffold00039.54 0.8785823373959935 85 AMTR_s00024p00180920 evm_27.TU.AmTr_v1.0_scaffold00024.142 0.8785381092101625 55 AMTR_s00007p00094450 Protein SMAX1-LIKE 7 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00007.53 0.8775453265780265 56 AMTR_s00099p00089660 evm_27.TU.AmTr_v1.0_scaffold00099.67 0.8759428538070807 87 AMTR_s00043p00168880 BTB/POZ domain-containing protein At3g22104 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00043.37 0.8720939940631721 62 AMTR_s00012p00252270 evm_27.TU.AmTr_v1.0_scaffold00012.259 0.8703889718897589 64 AMTR_s00010p00141760 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.dehydroascorbate reductase (DHAR) DHAR3, evm_27.TU.AmTr_v1.0_scaffold00010.104 0.8693329580148494 77 AMTR_s00101p00054740 evm_27.TU.AmTr_v1.0_scaffold00101.27 0.8690357252291587 66 AMTR_s00104p00098970 PIFI, evm_27.TU.AmTr_v1.0_scaffold00104.36 0.868206483767397 68 AMTR_s00027p00217960 Rhodanese-like domain-containing protein 14, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00027.81 0.8666782377475698 84 AMTR_s00030p00229610 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor evm_27.TU.AmTr_v1.0_scaffold00030.182 0.8620521299938442 76 AMTR_s00046p00227230 Uncharacterized protein At4g37920 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00046.167 0.8602880537210962 81 AMTR_s00040p00188540 Carbohydrate metabolism.starch metabolism.synthesis.starch branching enzyme SBE2.2, evm_27.TU.AmTr_v1.0_scaffold00040.184 0.8595202503959626 83 AMTR_s00019p00027190 APO protein 2, chloroplastic OS=Arabidopsis thaliana emb1629, APO2, evm_27.TU.AmTr_v1.0_scaffold00019.6 0.859427617579044 85 AMTR_s00149p00067730 evm_27.TU.AmTr_v1.0_scaffold00149.45 0.8592866224285167 88 AMTR_s00056p00191070 Enzyme classification.EC_2 transferases.EC_2.7 transferase transferring phosphorus-containing group evm_27.TU.AmTr_v1.0_scaffold00056.177 0.8579237476888103 90 AMTR_s00029p00095840 Large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.88 0.8552955219820546 98 AMTR_s00143p00086620 Enzyme classification.EC_2 transferases.EC_2.7 transferase transferring phosphorus-containing group evm_27.TU.AmTr_v1.0_scaffold00143.21 0.8552391672691653 99