Sequence Description Alias PCC hrr AMTR_s00054p00095350 Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-II histone deacetylase ATHDA14, hda14, evm_27.TU.AmTr_v1.0_scaffold00054.32 0.9410077173128593 7 AMTR_s00107p00035950 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL1 component evm_27.TU.AmTr_v1.0_scaffold00107.14 0.9395756955200868 2 AMTR_s00046p00146170 evm_27.TU.AmTr_v1.0_scaffold00046.79 0.9374043222114782 11 AMTR_s00071p00149740 Photosynthesis.photophosphorylation.photosystem II.photoprotection.MPH1 protein evm_27.TU.AmTr_v1.0_scaffold00071.135 0.9369568051699605 17 AMTR_s00329p00011770 Solute transport.carrier-mediated transport.MEX maltose transporter MEX1, RCP1, evm_27.TU.AmTr_v1.0_scaffold00329.2 0.9339448165704 5 AMTR_s00012p00154880 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.ALB3 component ALB3, evm_27.TU.AmTr_v1.0_scaffold00012.92 0.9331294193500493 17 AMTR_s00061p00196800 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group evm_27.TU.AmTr_v1.0_scaffold00061.232 0.9322775642931006 23 AMTR_s00020p00012640 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea evm_27.TU.AmTr_v1.0_scaffold00020.3 0.9299787949012697 24 AMTR_s00004p00178250 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00004.203 0.926685355852363 12 AMTR_s00059p00183340 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.HCF164 thioredoxin-like factor HCF164, evm_27.TU.AmTr_v1.0_scaffold00059.198 0.9246643740639623 10 AMTR_s00040p00202990 2-carboxy-D-arabinitol-1-phosphatase OS=Triticum aestivum evm_27.TU.AmTr_v1.0_scaffold00040.206 0.9242608385001216 15 AMTR_s00071p00187330 Prolycopene isomerase, chloroplastic OS=Daucus carota evm_27.TU.AmTr_v1.0_scaffold00071.196 0.923005458633272 12 AMTR_s00008p00109510 Translation factor GUF1 homolog, chloroplastic OS=Vitis vinifera evm_27.TU.AmTr_v1.0_scaffold00008.45 0.9215220429242607 16 AMTR_s00137p00042790 Protein biosynthesis.organelle translation machineries.translation initiation.IF-3 initiation factor evm_27.TU.AmTr_v1.0_scaffold00137.14 0.9212619593703633 14 AMTR_s00029p00233910 Protein modification.peptide maturation.plastid.EGY protease ATEGY2, EGY2, evm_27.TU.AmTr_v1.0_scaffold00029.376 0.9208149377712324 22 AMTR_s00007p00219480 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.uroporphyrinogen III decarboxylase HEME2, evm_27.TU.AmTr_v1.0_scaffold00007.207 0.9192456343246004 16 AMTR_s00016p00074040 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCB cytochrome b6 maturation system (system IV).CCB1 component CCB1, evm_27.TU.AmTr_v1.0_scaffold00016.38 0.9165124263467676 17 AMTR_s00002p00210720 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL19 component evm_27.TU.AmTr_v1.0_scaffold00002.217 0.916254192800504 22 AMTR_s00009p00072720 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor SIGF, SIG6, SOLDAT8, ATSIG6, evm_27.TU.AmTr_v1.0_scaffold00009.21 0.9158912108311883 19 AMTR_s00024p00130820 evm_27.TU.AmTr_v1.0_scaffold00024.77 0.915359223427102 20 AMTR_s00040p00174940 Flagellar radial spoke protein 5 OS=Chlamydomonas reinhardtii evm_27.TU.AmTr_v1.0_scaffold00040.165 0.9148241017048171 22 AMTR_s00066p00198600 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.VIPP protein PTAC4, VIPP1, evm_27.TU.AmTr_v1.0_scaffold00066.264 0.9147603536650767 22 AMTR_s00003p00268300 GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00003.397 0.9143796585903449 23 AMTR_s00142p00060790 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.transfer phase.HCF101 component HCF101, evm_27.TU.AmTr_v1.0_scaffold00142.34 0.9143400452619685 26 AMTR_s00069p00135030 Protein-ribulosamine 3-kinase, chloroplastic OS=Oryza sativa subsp. indica evm_27.TU.AmTr_v1.0_scaffold00069.99 0.9128231352957312 25 AMTR_s00003p00168720 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.RH3 basal splicing factor emb1138, evm_27.TU.AmTr_v1.0_scaffold00003.145 0.9126308430534346 38 AMTR_s00002p00197820 RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.183 0.9123930094558484 27 AMTR_s00066p00167590 Thioredoxin-like fold domain-containing protein MRL7, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.192 0.9118152651612228 28 AMTR_s00031p00080280 Heme-binding-like protein At3g10130, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00031.31 0.9110520564329421 29 AMTR_s00011p00266100 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor SIGB, SIG2, SIGA, SIG1, RPOD1, evm_27.TU.AmTr_v1.0_scaffold00011.228 0.9106200755623095 39 AMTR_s00012p00252840 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.one-helix LHC-related protein group.OHP1 protein evm_27.TU.AmTr_v1.0_scaffold00012.263 0.9104864252858256 31 AMTR_s00022p00242310 Protein modification.peptide maturation.plastid.CtpA carboxy-terminal processing peptidase evm_27.TU.AmTr_v1.0_scaffold00022.351 0.9094778800877876 32 AMTR_s00061p00174500 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCS cytochrome f/c6 maturation system (system II).CcdA component CcdA, evm_27.TU.AmTr_v1.0_scaffold00061.187 0.9089745500662453 33 AMTR_s00078p00161460 DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica RH39, evm_27.TU.AmTr_v1.0_scaffold00078.147 0.9066532040065657 34 AMTR_s00103p00115980 Protein TAB2 homolog, chloroplastic OS=Arabidopsis thaliana ATAB2, evm_27.TU.AmTr_v1.0_scaffold00103.69 0.9065484932209319 35 AMTR_s00039p00096400 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.7-hydroxymethyl chlorophyll(ide) a reductase evm_27.TU.AmTr_v1.0_scaffold00039.54 0.9056248419732895 36 AMTR_s00006p00252810 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp90 family.Hsp90 protein EMB1956, Hsp88.1, HSP90.5, AtHsp90.5, CR88, evm_27.TU.AmTr_v1.0_scaffold00006.165 0.9050781718848144 38 AMTR_s00072p00084990 Photosynthesis.photophosphorylation.cytochrome b6/f complex.Rieske iron-sulfur component PetC PGR1, PETC, evm_27.TU.AmTr_v1.0_scaffold00072.37 0.904006830133911 58 AMTR_s00004p00145140 evm_27.TU.AmTr_v1.0_scaffold00004.142 0.9025905147591072 39 AMTR_s00041p00009900 evm_27.TU.AmTr_v1.0_scaffold00041.2 0.9023211966904419 40 AMTR_s00008p00223050 Protein OBERON 3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00008.141 0.9020723044333322 41 AMTR_s00049p00107230 evm_27.TU.AmTr_v1.0_scaffold00049.81 0.9012491713655788 70 AMTR_s00010p00237980 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase ATATH13, OSA1, ATH13, ATOSA1, evm_27.TU.AmTr_v1.0_scaffold00010.293 0.9009508320248253 83 AMTR_s00024p00251490 Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00024.341 0.9001745620071686 44 AMTR_s00065p00043720 Redox homeostasis.hydrogen peroxide removal.glutathione peroxidase GPX1, ATGPX1, evm_27.TU.AmTr_v1.0_scaffold00065.18 0.8997733675004403 45 AMTR_s00008p00118590 Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00008.50 0.8997255412105317 46 AMTR_s00130p00051210 evm_27.TU.AmTr_v1.0_scaffold00130.20 0.8994003930477129 47 AMTR_s00016p00252780 Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana 0.8985544545636658 48 AMTR_s00083p00031040 Photosynthesis.photorespiration.aminotransferases.glutamate-glyoxylate transaminase GGAT1, GGT1, AOAT1, evm_27.TU.AmTr_v1.0_scaffold00083.7 0.8978510981170702 49 AMTR_s00003p00105430 Protein degradation.peptidase families.serine-type peptidase activities.serine carboxypeptidase scpl33, evm_27.TU.AmTr_v1.0_scaffold00003.71 0.8976565785708681 50 AMTR_s00078p00084050 evm_27.TU.AmTr_v1.0_scaffold00078.57 0.8957032428894479 51 AMTR_s00003p00211760 RNA processing.organelle machineries.ribonuclease activities.CSP41 endoribonuclease CRB, HIP1.3, CSP41B, evm_27.TU.AmTr_v1.0_scaffold00003.202 0.8955370685050875 52 AMTR_s00036p00206170 evm_27.TU.AmTr_v1.0_scaffold00036.123 0.8953282436864209 54 AMTR_s00010p00259490 Coenzyme metabolism.thiamine pyrophosphate synthesis.hydroxymethylpyrimidine diphosphate synthesis.hydroxymethylpyrimidine phosphate synthase (ThiC) THIC, PY, evm_27.TU.AmTr_v1.0_scaffold00010.423 0.8952663182998652 54 AMTR_s00021p00243800 Cell wall.cutin and suberin.cuticular lipid formation.acyl-reduction pathway.wax ester synthase and diacylglycerol acyltransferase evm_27.TU.AmTr_v1.0_scaffold00021.259 0.8949605544905685 55 AMTR_s00106p00108310 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component VAR2, FTSH2, evm_27.TU.AmTr_v1.0_scaffold00106.79 0.8949547753444098 56 AMTR_s00029p00122880 Disease resistance protein RPS5 OS=Arabidopsis thaliana RPS5, evm_27.TU.AmTr_v1.0_scaffold00029.137 0.8947241519628696 64 AMTR_s00039p00053980 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00039.21 0.8947206778001154 58 AMTR_s00132p00112670 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll breakdown.red chlorophyll catabolite reductase (RCCR) ATRCCR, ACD2, evm_27.TU.AmTr_v1.0_scaffold00132.27 0.8945653568525679 59 AMTR_s00004p00065250 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.MET1 protein ZKT, evm_27.TU.AmTr_v1.0_scaffold00004.48 0.8943864330284131 60 AMTR_s00099p00089660 evm_27.TU.AmTr_v1.0_scaffold00099.67 0.8935396613433141 61 AMTR_s00006p00263750 Disease resistance protein RPM1 OS=Arabidopsis thaliana HRT, RCY1, RPP8, evm_27.TU.AmTr_v1.0_scaffold00006.254 0.8929305390716907 63 AMTR_s00002p00233660 GTP-binding protein At3g49725, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.269 0.8915890116409447 64 AMTR_s00011p00231930 Pheophytinase, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00011.113 0.8914573092568806 65 AMTR_s00001p00191890 Photosynthesis.photophosphorylation.cyclic electron flow.PGR5/PGRL1 complex.PGRL1-like component PGR5-LIKE A, evm_27.TU.AmTr_v1.0_scaffold00001.191 0.8883529092709805 79 AMTR_s00106p00071130 Senescence-associated protein OSA15, chloroplastic OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00106.45 0.8870733294699629 68 AMTR_s00055p00213550 Polyamine metabolism.spermidine/spermine.degradation.polyamine oxidase APAO, ATPAO1, PAO1, evm_27.TU.AmTr_v1.0_scaffold00055.158 0.8867153090061394 69 AMTR_s00019p00208640 Pentatricopeptide repeat-containing protein At5g10690 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.251 0.886536128029344 70 AMTR_s00109p00113060 Redox homeostasis.low-molecular-weight scavengers.tocopherol biosynthesis.tocopherol cyclase (VTE1/TC) ATSDX1, VTE1, evm_27.TU.AmTr_v1.0_scaffold00109.111 0.886005870597032 75 AMTR_s00002p00266310 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.glutathione reductase (GR) GR, EMB2360, ATGR2, evm_27.TU.AmTr_v1.0_scaffold00002.507 0.8855170894034102 72 AMTR_s00009p00232920 evm_27.TU.AmTr_v1.0_scaffold00009.186 0.8844732568476197 73 AMTR_s00026p00112660 Nucleotide metabolism.purines.phosphotransfers.adenylate kinase evm_27.TU.AmTr_v1.0_scaffold00026.52 0.8836506174597007 88 AMTR_s00044p00143330 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.LPA3 protein LPA3, evm_27.TU.AmTr_v1.0_scaffold00044.141 0.88279248251716 92 AMTR_s00025p00214840 Probable starch synthase 4, chloroplastic/amyloplastic OS=Arabidopsis thaliana ATSS4, SS4, SSIV, evm_27.TU.AmTr_v1.0_scaffold00025.290 0.8825473451496847 78 AMTR_s00029p00221060 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL4 component RPL4, evm_27.TU.AmTr_v1.0_scaffold00029.338 0.8814283972761853 79 AMTR_s00059p00159100 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.4-hydroxy-3-methylbut-2-enyl diphosphate reductase CLB6, ISPH, HDR, evm_27.TU.AmTr_v1.0_scaffold00059.146 0.8810951557516387 80 AMTR_s00002p00249620 Probable GTP-binding protein OBGC2 OS=Oryza sativa subsp. japonica CPSAR1, EMB269, ATOBGC, evm_27.TU.AmTr_v1.0_scaffold00002.348 0.8798647616418337 82 AMTR_s00002p00100650 evm_27.TU.AmTr_v1.0_scaffold00002.59 0.8796984648789918 89 AMTR_s00038p00072170 Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00038.31 0.8789139760269069 84 AMTR_s00002p00256470 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00002.408 0.8788278204512409 86 AMTR_s00099p00023240 evm_27.TU.AmTr_v1.0_scaffold00099.10 0.8782013343737799 87 AMTR_s00035p00023210 Carbohydrate metabolism.gluconeogenesis.pyruvate orthophosphate dikinase activity.regulatory pyruvate orthophosphate dikinase kinase ATRP1, RP1, evm_27.TU.AmTr_v1.0_scaffold00035.4 0.8781445875236702 88 AMTR_s00001p00188890 Carbohydrate metabolism.starch metabolism.synthesis.plastidial phosphoglucomutase PGM, PGM1, STF1, ATPGMP, evm_27.TU.AmTr_v1.0_scaffold00001.187 0.877286435512088 89 AMTR_s00089p00073940 evm_27.TU.AmTr_v1.0_scaffold00089.34 0.8766526005757518 90 AMTR_s00095p00166740 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.DAC factor evm_27.TU.AmTr_v1.0_scaffold00095.146 0.8765362094853265 91 AMTR_s00024p00220440 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.electron donor-binding subcomplex E.NdhU component evm_27.TU.AmTr_v1.0_scaffold00024.215 0.8764676891982958 92 AMTR_s00007p00061550 RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor JKD, evm_27.TU.AmTr_v1.0_scaffold00007.32 0.8761921849417884 93 AMTR_s00029p00225980 Solute transport.carrier-mediated transport.MFS superfamily.PHT4 phosphate transporter ANTR2, PHT4;4, evm_27.TU.AmTr_v1.0_scaffold00029.352 0.8760760752381407 94 AMTR_s00119p00060890 Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana VAR3, evm_27.TU.AmTr_v1.0_scaffold00119.41 0.8760600157108591 95 AMTR_s00019p00158670 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.two-helix LHC-related protein group.SEP5 protein evm_27.TU.AmTr_v1.0_scaffold00019.152 0.8756572099542582 96 AMTR_s00011p00203340 GTPase ERA-like, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00011.71 0.8747462690416641 97 AMTR_s00010p00131320 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex A.NdhL component CRR23, evm_27.TU.AmTr_v1.0_scaffold00010.88 0.8744945815386211 98 AMTR_s00015p00257490 Photosynthesis.photophosphorylation.linear electron flow.ferredoxin-NADP reductase (FNR) activity.FNR membrane-tethering.TROL protein TROL, evm_27.TU.AmTr_v1.0_scaffold00015.112 0.8744881318522577 99 AMTR_s00025p00246210 RNA processing.organelle machineries.ribonuclease activities.CSP41 endoribonuclease CSP41A, evm_27.TU.AmTr_v1.0_scaffold00025.394 0.8743881665614444 100