Sequence Description Alias PCC hrr AMTR_s00025p00215680 Protein modification.phosphorylation.TKL kinase superfamily.MAP3K-RAF kinase evm_27.TU.AmTr_v1.0_scaffold00025.292 0.9394216099465423 1 AMTR_s00032p00053220 Phytohormones.ethylene.perception and signal transduction.ETR/ERS-type receptor protein ETR, ETR1, EIN1, AtETR1, evm_27.TU.AmTr_v1.0_scaffold00032.33 0.9206611290026607 2 AMTR_s00078p00155240 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).SF1 pre-mRNA splicing factor evm_27.TU.AmTr_v1.0_scaffold00078.136 0.9144772631923689 3 AMTR_s00147p00043750 Protein translocation.nucleus.nucleocytoplasmic transport.importin alpha adaptor proteins IMPA-1, IMPA1, AT-IMP, ATKAP ALPHA, AIMP ALPHA, evm_27.TU.AmTr_v1.0_scaffold00147.17 0.9039958089547324 4 AMTR_s00072p00045010 Protein modification.phosphorylation.TKL kinase superfamily.G-Lectin kinase families.SD-2 kinase evm_27.TU.AmTr_v1.0_scaffold00072.15 0.9038322500690072 5 AMTR_s00119p00117410 RNA biosynthesis.transcriptional activation.EIL (EIN3-like) transcription factor EIL1, AtEIL1, evm_27.TU.AmTr_v1.0_scaffold00119.91 0.8995189591553331 6 AMTR_s00155p00079840 RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.CPSF30/Yth1 component CPSF30, ATCPSF30, evm_27.TU.AmTr_v1.0_scaffold00155.52 0.8976716679945613 7 AMTR_s00085p00052820 Cell division cycle protein 48 homolog OS=Glycine max CDC48A, CDC48, ATCDC48, evm_27.TU.AmTr_v1.0_scaffold00085.22 0.8926035886264748 10 AMTR_s00226p00023090 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.middle module.MED4 component evm_27.TU.AmTr_v1.0_scaffold00226.12 0.8896926567014138 9 AMTR_s00155p00028780 Protein PAT1 homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00155.12 0.889363324109555 10 AMTR_s00049p00211440 Vesicle trafficking.autophagosome formation.cargo recruitment.NBR1 autophagic adapter protein evm_27.TU.AmTr_v1.0_scaffold00049.238 0.8884679967781173 11 AMTR_s00046p00170580 RNA processing.RNA decay.Nonsense-Mediated mRNA Decay (NMD).SMG7 protein SMG7, evm_27.TU.AmTr_v1.0_scaffold00046.93 0.8856806074127086 12 AMTR_s00060p00187100 F-box protein SKIP28 OS=Arabidopsis thaliana MEE11, evm_27.TU.AmTr_v1.0_scaffold00060.123 0.8849999176453934 13 AMTR_s00058p00188470 Protein translocation.nucleus.nucleocytoplasmic transport.karyopherin beta transport receptors.IMB1 import karyopherin evm_27.TU.AmTr_v1.0_scaffold00058.186 0.8842577721669932 14 AMTR_s00002p00269760 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00002.558 0.8827446118835802 22 AMTR_s00087p00057840 evm_27.TU.AmTr_v1.0_scaffold00087.12 0.8797614660679417 18 AMTR_s00004p00045050 FRIGIDA-like protein 4a OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00004.28 0.8797145016367679 17 AMTR_s00099p00081960 Pentatricopeptide repeat-containing protein At1g10270 OS=Arabidopsis thaliana GRP23, evm_27.TU.AmTr_v1.0_scaffold00099.60 0.874259635365772 20 AMTR_s00002p00195630 RNA-binding KH domain-containing protein PEPPER OS=Arabidopsis thaliana PEP, evm_27.TU.AmTr_v1.0_scaffold00002.178 0.8739125984686447 19 AMTR_s00146p00095280 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPM/PP2C Mn/Mg-dependent phosphatase families.clade A phosphatase HAB1, evm_27.TU.AmTr_v1.0_scaffold00146.58 0.8725702936342496 20 AMTR_s00057p00208300 evm_27.TU.AmTr_v1.0_scaffold00057.251 0.8724828113226555 21 AMTR_s00111p00140620 RGG repeats nuclear RNA binding protein A (Fragment) OS=Nicotiana tabacum evm_27.TU.AmTr_v1.0_scaffold00111.120 0.8706850329088052 22 AMTR_s00004p00270220 evm_27.TU.AmTr_v1.0_scaffold00004.293 0.8696856884181255 23 AMTR_s00013p00198120 Vesicle trafficking.target membrane tethering.Exocyst complex.EXO70 component ATEXO70F1, EXO70F1, evm_27.TU.AmTr_v1.0_scaffold00013.132 0.8691543535313991 24 AMTR_s00072p00117380 Cell division control protein 48 homolog D OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00072.59 0.8675385468425476 32 AMTR_s00001p00252660 RNA biosynthesis.RNA polymerase II-dependent transcription.PAF1C transcription initiation and elongation complex.ELF7/PAF1 component ELF7, evm_27.TU.AmTr_v1.0_scaffold00001.325 0.8672395627315019 26 AMTR_s00071p00180880 MACPF domain-containing protein At4g24290 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00071.184 0.8664033675715097 27 AMTR_s00058p00125550 evm_27.TU.AmTr_v1.0_scaffold00058.89 0.8658535470087052 28 AMTR_s00142p00049490 Nutrient uptake.phosphorus assimilation.phosphate signalling.PHR1 transcription factor evm_27.TU.AmTr_v1.0_scaffold00142.28 0.8654082147378908 29 AMTR_s00032p00133570 Protein biosynthesis.translation elongation.eEF2 mRNA-translocation factor LOS1, evm_27.TU.AmTr_v1.0_scaffold00032.93 0.865257978565728 30 AMTR_s00142p00104490 evm_27.TU.AmTr_v1.0_scaffold00142.68 0.8650646281073338 31 AMTR_s00069p00104060 Protein degradation.peptide tagging.Related-to-Ubiquitin (RUB/NEDD8)-anchor modification (neddylation).RUB deconjugation of neddylated cullin.COP9 signalosome complex.CSN1 component ATSK31, ATFUS6, SK31, CSN1, EMB78, FUS6, COP11, evm_27.TU.AmTr_v1.0_scaffold00069.66 0.8616650061028897 32 AMTR_s00049p00198350 Protein modification.phosphorylation.AGC kinase superfamily.AGC-VIII kinase D6PKL2, PK5, evm_27.TU.AmTr_v1.0_scaffold00049.210 0.8615985412074382 33 AMTR_s00049p00063500 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPP Fe-Zn-dependent phosphatase families.PP2A phosphatase complexes.B1-type regulatory component ATB' GAMMA, evm_27.TU.AmTr_v1.0_scaffold00049.40 0.8612741055357536 34 AMTR_s00056p00074670 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).central subcomplex.NUP35 nucleoporin evm_27.TU.AmTr_v1.0_scaffold00056.54 0.8609014731105097 35 AMTR_s00010p00228130 UBP1-associated protein 2A OS=Arabidopsis thaliana UBA2A, evm_27.TU.AmTr_v1.0_scaffold00010.256 0.8603425949901546 37 AMTR_s00012p00251030 Pumilio homolog 2 OS=Arabidopsis thaliana APUM2, PUM2, evm_27.TU.AmTr_v1.0_scaffold00012.251 0.8599866642311913 89 AMTR_s00153p00065050 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBA-activating E1 protein UBA1, MOS5, ATUBA1, evm_27.TU.AmTr_v1.0_scaffold00153.31 0.8588249815757605 39 AMTR_s00069p00158470 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN11 regulatory component evm_27.TU.AmTr_v1.0_scaffold00069.131 0.858230462007969 40 AMTR_s00061p00057890 HAP8, evm_27.TU.AmTr_v1.0_scaffold00061.33 0.8567257115290586 41 AMTR_s00023p00015970 RNA biosynthesis.transcriptional activation.FAR1 transcription factor FRS5, evm_27.TU.AmTr_v1.0_scaffold00023.4 0.8563661972807609 60 AMTR_s00024p00250640 Putative AC transposase OS=Zea mays evm_27.TU.AmTr_v1.0_scaffold00024.334 0.8563316665198295 43 AMTR_s00048p00164020 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-HCa-type E3 ligase evm_27.TU.AmTr_v1.0_scaffold00048.117 0.8555917754436578 44 AMTR_s00004p00270260 Protein modification.phosphorylation.TKL kinase superfamily.MAP3K-RAF kinase evm_27.TU.AmTr_v1.0_scaffold00004.294 0.8544274723170157 45 AMTR_s00059p00094000 DNA damage response.DNA repair mechanisms.base excision repair (BER).apurinic/apyrimidinic (AP) endonuclease activities.ARP AP-endonuclease ARP, evm_27.TU.AmTr_v1.0_scaffold00059.68 0.8526795553111968 46 AMTR_s00029p00096200 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3A complex.SF3A1 component evm_27.TU.AmTr_v1.0_scaffold00029.89 0.8520363554767333 57 AMTR_s00001p00261430 Multi-process regulation.circadian clock.evening element regulation.REVEILLE clock factor evm_27.TU.AmTr_v1.0_scaffold00001.380 0.8508647748666226 48 AMTR_s00092p00134420 Cell wall.hemicellulose.xyloglucan.modification and degradation.1,6-alpha-xylosidase evm_27.TU.AmTr_v1.0_scaffold00092.100 0.8483974198545963 49 AMTR_s00051p00079490 RNA biosynthesis.transcriptional repression.TPL/TPR transcriptional co-repressor TPR1, evm_27.TU.AmTr_v1.0_scaffold00051.29 0.8467493932382207 92 AMTR_s00056p00036030 RNA biosynthesis.transcriptional repression.AFP/NINJA transcriptional co-repressor NINJA, evm_27.TU.AmTr_v1.0_scaffold00056.20 0.8457851151304028 51 AMTR_s00010p00218150 evm_27.TU.AmTr_v1.0_scaffold00010.227 0.8453760031161238 89 AMTR_s00090p00122120 Amino acid metabolism.degradation.aromatic amino acid.tyrosine.fumarylacetoacetate hydrolase evm_27.TU.AmTr_v1.0_scaffold00090.61 0.8453106676371025 54 AMTR_s00071p00153290 evm_27.TU.AmTr_v1.0_scaffold00071.140 0.8452514571351685 55 AMTR_s00029p00021500 RNA biosynthesis.transcriptional activation.MYB superfamily.MYB-related transcription factor evm_27.TU.AmTr_v1.0_scaffold00029.4 0.8448218261553649 56 AMTR_s00069p00173060 Protein MODIFIER OF SNC1 1 OS=Arabidopsis thaliana MOS1, evm_27.TU.AmTr_v1.0_scaffold00069.150 0.8446185462106701 57 AMTR_s00069p00195010 RNA biosynthesis.transcriptional activation.GeBP transcription factor evm_27.TU.AmTr_v1.0_scaffold00069.205 0.8443743005872362 58 AMTR_s00089p00089760 evm_27.TU.AmTr_v1.0_scaffold00089.47 0.8441782213209706 59 AMTR_s00019p00206980 Calmodulin-binding protein 60 B OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.246 0.8439626707277388 60 AMTR_s02191p00008430 evm_27.TU.AmTr_v1.0_scaffold02191.1 0.843923807648702 61 AMTR_s00004p00150000 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.Efl1 elongation-factor-like regulatory GTPase evm_27.TU.AmTr_v1.0_scaffold00004.154 0.8436620517385368 62 AMTR_s00006p00266790 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group.UAfT nucleotide sugar transporter evm_27.TU.AmTr_v1.0_scaffold00006.292 0.843590185005141 63 AMTR_s00029p00219930 RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor SE, evm_27.TU.AmTr_v1.0_scaffold00029.336 0.8413629334384998 64 AMTR_s00009p00235710 Protein modification.phosphorylation.TKL kinase superfamily.RLCK-IX kinase families.RLCK-IXb kinase evm_27.TU.AmTr_v1.0_scaffold00009.195 0.8404398923137224 67 AMTR_s00065p00122030 Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00065.72 0.8392299393618662 68 AMTR_s00084p00172920 evm_27.TU.AmTr_v1.0_scaffold00084.45 0.8390404298001186 69 AMTR_s00002p00243900 RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.BEL transcription factor BLH7, evm_27.TU.AmTr_v1.0_scaffold00002.320 0.8389082155665137 70 AMTR_s00009p00258510 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ligase complexes.CUL1/CUL2 scaffold component AXR6, ATCUL1, CUL1, evm_27.TU.AmTr_v1.0_scaffold00009.301 0.8387672655055827 88 AMTR_s00041p00174550 Protein translocation.chloroplast.outer envelope TOC translocation system.Toc90/Toc120/Toc132/Toc159 component ATTOC132, TOC132, evm_27.TU.AmTr_v1.0_scaffold00041.131 0.8383334299501902 72 AMTR_s00009p00238900 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.kinase module.MED12 component CCT, CRP, evm_27.TU.AmTr_v1.0_scaffold00009.205 0.83780617622761 92 AMTR_s00078p00168060 Protein biosynthesis.aminoacyl-tRNA synthetase activities.leucine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00078.157 0.8374444019761925 75 AMTR_s00001p00269200 RNA processing.RNA modification.uridylation.URT1 uridylyltransferase evm_27.TU.AmTr_v1.0_scaffold00001.433 0.8373279125109463 76 AMTR_s00065p00037640 evm_27.TU.AmTr_v1.0_scaffold00065.16 0.8368251995153405 77 AMTR_s00156p00043680 evm_27.TU.AmTr_v1.0_scaffold00156.20 0.8360053595324382 78 AMTR_s00174p00040410 Protein modification.dephosphorylation.tyrosine protein phosphatase (PTP) superfamily.dual-specificity phosphatase families.MAP-kinase phosphatase ATMKP1, MKP1, evm_27.TU.AmTr_v1.0_scaffold00174.16 0.8352188747480773 79 AMTR_s00044p00145170 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.U-Box E3 ligase activities.PUB-type PUB44, SAUL1, ATPUB44, evm_27.TU.AmTr_v1.0_scaffold00044.147 0.8341400512604861 81 AMTR_s00101p00147880 Lipid metabolism.galactolipid and sulfolipid synthesis.digalactosyldiacylglycerol synthase DGD2, evm_27.TU.AmTr_v1.0_scaffold00101.122 0.8325933015727763 83 AMTR_s00065p00171490 RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.Fip1 component FIP1[V], ATFIP1[V], FIPS5, ATFIPS5, evm_27.TU.AmTr_v1.0_scaffold00065.140 0.8322242428134645 85 AMTR_s00024p00176520 Protein modification.phosphorylation.CK kinase superfamily.MLK protein kinase evm_27.TU.AmTr_v1.0_scaffold00024.135 0.8317838449837638 86 AMTR_s00025p00085190 Probable E3 ubiquitin-protein ligase LUL3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00025.66 0.8285772983147459 92 AMTR_s00059p00213590 Protein degradation.peptidase families.serine-type peptidase activities.chloroplast Clp-type protease complex.ClpT plant-specific stabilizing component evm_27.TU.AmTr_v1.0_scaffold00059.250 0.8284095966958098 93 AMTR_s00048p00118270 Vesicle trafficking.endomembrane trafficking.protein recycling.ubiquitylated cargo adaptors.TOM associated protein evm_27.TU.AmTr_v1.0_scaffold00048.61 0.8273382134877091 95 AMTR_s00080p00104750 evm_27.TU.AmTr_v1.0_scaffold00080.39 0.8265036750384787 98 AMTR_s00144p00055810 evm_27.TU.AmTr_v1.0_scaffold00144.26 0.8260033792164859 99 AMTR_s00013p00238320 evm_27.TU.AmTr_v1.0_scaffold00013.196 0.8253645922846183 100