Sequence Description Alias PCC hrr AMTR_s00024p00121650 Protein modification.phosphorylation.CMGC kinase superfamily.DYRK kinase evm_27.TU.AmTr_v1.0_scaffold00024.71 0.9452656723583177 3 AMTR_s00068p00177220 Protein modification.phosphorylation.CMGC kinase superfamily.cyclin-dependent kinase families.CDK9 kinase evm_27.TU.AmTr_v1.0_scaffold00068.133 0.9379682553986154 3 AMTR_s00106p00148070 G2484-1, ATG2484-1, evm_27.TU.AmTr_v1.0_scaffold00106.122 0.9349878992172794 3 AMTR_s00037p00128200 evm_27.TU.AmTr_v1.0_scaffold00037.54 0.9336769086485179 4 AMTR_s00106p00091710 evm_27.TU.AmTr_v1.0_scaffold00106.60 0.9321003197679899 5 AMTR_s00009p00216420 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Snf2 chromatin remodeling factor CHA2, CHR2, BRM, ATBRM, evm_27.TU.AmTr_v1.0_scaffold00009.153 0.9318313855426371 6 AMTR_s00080p00131040 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase HERK1, evm_27.TU.AmTr_v1.0_scaffold00080.56 0.9267328668130667 7 AMTR_s00003p00101050 evm_27.TU.AmTr_v1.0_scaffold00003.65 0.925259896955289 41 AMTR_s00004p00267320 Vesicle trafficking.target membrane tethering.DSL1 (Depends-on-SLY1) complex.MIP2 component evm_27.TU.AmTr_v1.0_scaffold00004.268 0.9246040518475532 57 AMTR_s00004p00023800 Protein modification.phosphorylation.TKL kinase superfamily.MAP3K-RAF kinase ATEDR1, EDR1, evm_27.TU.AmTr_v1.0_scaffold00004.8 0.923681336641353 10 AMTR_s00041p00031550 Vesicle trafficking.Coat protein I (COPI) coatomer machinery.ARF-GTPase guanyl-nucleotide exchange factor (ARF-GEF) activities.BIG-type ARF-GEF factor evm_27.TU.AmTr_v1.0_scaffold00041.15 0.923356014577364 11 AMTR_s00090p00148990 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Snf2 chromatin remodeling factor SYD, CHR3, evm_27.TU.AmTr_v1.0_scaffold00090.83 0.9214816788672399 12 AMTR_s00077p00082680 RNA biosynthesis.transcriptional activation.B3 superfamily.LAV-VAL transcription factor HSL1, VAL2, HSI2-L1, evm_27.TU.AmTr_v1.0_scaffold00077.66 0.9209267551462262 13 AMTR_s00032p00063530 evm_27.TU.AmTr_v1.0_scaffold00032.40 0.9207891468446601 100 AMTR_s00091p00037050 Protein modification.phosphorylation.AGC kinase superfamily.MAST kinase evm_27.TU.AmTr_v1.0_scaffold00091.6 0.920536711999352 15 AMTR_s00019p00148170 Vesicle trafficking.Coat protein II (COPII) coatomer machinery.Sec16 Sar1-GTPase-regulating protein evm_27.TU.AmTr_v1.0_scaffold00019.136 0.9202115127893384 29 AMTR_s00145p00081540 Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase guanine nucleotide exchange factor (RAB-GEF) activities.MON1-CCZ1 RAB7 guanine nucleotide exchange factor complex.MON1/SAND component evm_27.TU.AmTr_v1.0_scaffold00145.30 0.918867629014106 17 AMTR_s00040p00210200 RNA processing.RNA 3-end polyadenylation.Cleavage Factor II (CF-IIm) complex.Pcf11 component evm_27.TU.AmTr_v1.0_scaffold00040.222 0.9183344904622641 31 AMTR_s00062p00113470 DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00062.93 0.9174473363241716 26 AMTR_s00033p00059780 Protein modification.lipidation.Cys-linked S-acylation.protein S-acyltransferase TIP1, evm_27.TU.AmTr_v1.0_scaffold00033.26 0.9171783750027732 20 AMTR_s00024p00018770 External stimuli response.biotic stress.pathogen-associated molecular pattern (PAMP).PTI (pattern-triggered immunity) network.bacterial elicitor response.non-canonical heterotrimeric G-protein complex.XLG atypical G-alpha component XLG3, evm_27.TU.AmTr_v1.0_scaffold00024.5 0.9148472767873334 21 AMTR_s00007p00201600 E3 ubiquitin-protein ligase listerin OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00007.177 0.9147311002785546 60 AMTR_s00069p00119460 Probable transcriptional regulator SLK2 OS=Arabidopsis thaliana SLK2, evm_27.TU.AmTr_v1.0_scaffold00069.80 0.9147181510399616 42 AMTR_s00078p00055040 RNA biosynthesis.siRNA biogenesis.RDR6 ssRNA polymerase SDE1, RDR6, SGS2, evm_27.TU.AmTr_v1.0_scaffold00078.28 0.9139214773389591 24 AMTR_s00122p00094620 RNA biosynthesis.transcriptional repression.LUG transcriptional co-repressor LUG, RON2, evm_27.TU.AmTr_v1.0_scaffold00122.38 0.912902321223989 61 AMTR_s00079p00078710 RNA biosynthesis.transcriptional activation.TAZ histone acetylase transcription factor ATHPCAT2, HAC1, ATHAC1, PCAT2, evm_27.TU.AmTr_v1.0_scaffold00079.26 0.9126698196649028 26 AMTR_s00012p00251030 Pumilio homolog 2 OS=Arabidopsis thaliana APUM2, PUM2, evm_27.TU.AmTr_v1.0_scaffold00012.251 0.9125442499671347 27 AMTR_s00071p00110320 RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor evm_27.TU.AmTr_v1.0_scaffold00071.85 0.9124497184089523 28 AMTR_s00071p00188270 RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.UPF3 component ATUPF3, UPF3, evm_27.TU.AmTr_v1.0_scaffold00071.198 0.912324035792186 29 AMTR_s00146p00059560 Cytoskeleton.microfilament network.myosin microfilament-based motor protein activities.class XI myosin ATXIK, XI-17, XIK, evm_27.TU.AmTr_v1.0_scaffold00146.36 0.9096929332394355 31 AMTR_s00068p00181410 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic subunits.subunit 2 EMB1989, RPB2, NRPB2, evm_27.TU.AmTr_v1.0_scaffold00068.139 0.9086645523577379 74 AMTR_s00059p00037210 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00059.20 0.907736001616808 33 AMTR_s00066p00129430 Vesicle trafficking.target membrane tethering.HOPS/CORVET membrane tethering complexes.VPS3 CORVET-specific component evm_27.TU.AmTr_v1.0_scaffold00066.122 0.907655263344632 94 AMTR_s00027p00205150 Protein modification.phosphorylation.STE kinase superfamily.MAP4K kinase evm_27.TU.AmTr_v1.0_scaffold00027.73 0.9075016161890439 35 AMTR_s00065p00174980 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin establishment.PDS5 cohesin cofactor evm_27.TU.AmTr_v1.0_scaffold00065.145 0.9064860515472116 62 AMTR_s00044p00137040 Solute transport.channels.GLR ligand-gated cation channel GLR3.3, ATGLR3.3, evm_27.TU.AmTr_v1.0_scaffold00044.128 0.9059158021459336 39 AMTR_s00028p00193460 Phytohormones.cytokinin.perception and signal transduction.AHK-type receptor AHK2, HK2, evm_27.TU.AmTr_v1.0_scaffold00028.85 0.9055087602936119 81 AMTR_s00002p00043100 Vesicle trafficking.target membrane tethering.COG (Conserved-Oligomeric Golgi) complex.COG6 component evm_27.TU.AmTr_v1.0_scaffold00002.17 0.9046992770541195 86 AMTR_s00059p00072490 Chromatin organisation.chromatin remodeling complexes.additional core components.BAF255/170 component CHB3, ATSWI3D, evm_27.TU.AmTr_v1.0_scaffold00059.47 0.9045668773831754 41 AMTR_s00036p00205320 Protein degradation.peptidase families.metallopeptidase activities.M16 families.PQQL-like peptidase evm_27.TU.AmTr_v1.0_scaffold00036.122 0.9042800854208947 42 AMTR_s00016p00110380 evm_27.TU.AmTr_v1.0_scaffold00016.72 0.9040099448635467 43 AMTR_s00048p00175550 NOV, evm_27.TU.AmTr_v1.0_scaffold00048.130 0.9035204746079933 44 AMTR_s00087p00057840 evm_27.TU.AmTr_v1.0_scaffold00087.12 0.9030557832987904 45 AMTR_s00004p00029120 evm_27.TU.AmTr_v1.0_scaffold00004.12 0.9021761126292046 47 AMTR_s00682p00010920 Chromatin organisation.histone chaperone activities.FACT histone chaperone complex.SPT16 component SPT16, evm_27.TU.AmTr_v1.0_scaffold00682.1 0.9018629883680676 48 AMTR_s00058p00137050 RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.HOX-like transcription factor evm_27.TU.AmTr_v1.0_scaffold00058.101 0.901379731601838 49 AMTR_s00058p00147810 External stimuli response.biotic stress.symbiont-associated response.symbiosis signalling pathway.NIN transcription factor NLP7, evm_27.TU.AmTr_v1.0_scaffold00058.115 0.9012024952569456 50 AMTR_s00002p00250180 RNA biosynthesis.RNA polymerase II-dependent transcription.SPT4/5 transcription elongation factor complex.SPT5 component GTA02, GTA2, evm_27.TU.AmTr_v1.0_scaffold00002.351 0.9003149968221978 51 AMTR_s00111p00041460 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF3 mRNA-to-PIC binding complex.eIF3a component ATTIF3A1, ATEIF3A-1, EIF3A-1, TIF3A1, EIF3A, evm_27.TU.AmTr_v1.0_scaffold00111.21 0.8978233841482043 69 AMTR_s00044p00148910 Vesicle trafficking.clathrin coated vesicle (CCV) machinery.TPLATE AP-2 co-adaptor complex.EH component evm_27.TU.AmTr_v1.0_scaffold00044.153 0.8973157609454382 55 AMTR_s00048p00159380 RNA biosynthesis.transcriptional repression.TPL/TPR transcriptional co-repressor TPL, WSIP1, evm_27.TU.AmTr_v1.0_scaffold00048.113 0.8972599119267743 56 AMTR_s00041p00134980 RNA processing.RNA modification.mRNA methylation.adenosine N6-methyltransferase complex.MTA component MTA, EMB1706, evm_27.TU.AmTr_v1.0_scaffold00041.95 0.8964971618721141 57 AMTR_s00148p00061600 Phytohormones.ethylene.perception and signal transduction.EIN2-type signal transducer ATEIN2, PIR2, EIN2, ERA3, ORE3, CKR1, ORE2, evm_27.TU.AmTr_v1.0_scaffold00148.35 0.8955964964075791 59 AMTR_s00009p00238900 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.kinase module.MED12 component CCT, CRP, evm_27.TU.AmTr_v1.0_scaffold00009.205 0.8955479028976352 60 AMTR_s00028p00081930 evm_27.TU.AmTr_v1.0_scaffold00028.20 0.8949274723112075 62 AMTR_s00020p00134590 Protein translocation.nucleus.nucleocytoplasmic transport.karyopherin beta transport receptors.IPO8 import karyopherin SAD2, URM9, evm_27.TU.AmTr_v1.0_scaffold00020.48 0.8942331892205471 63 AMTR_s00137p00010410 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPM/PP2C Mn/Mg-dependent phosphatase families.clade I phosphatase evm_27.TU.AmTr_v1.0_scaffold00137.1 0.8942319546350886 64 AMTR_s00016p00233120 Cell wall.sporopollenin.exine wall formation.NEF1 exine patterning factor NEF1, evm_27.TU.AmTr_v1.0_scaffold00016.232 0.8942265638332376 65 AMTR_s00135p00021060 Protein degradation.peptidase families.cysteine-type peptidase activities.ubiquitin-specific protease UBP16, evm_27.TU.AmTr_v1.0_scaffold00135.4 0.8936677042979702 66 AMTR_s00029p00079800 RNA biosynthesis.transcriptional activation.HUA2 transcription factor HUA2, evm_27.TU.AmTr_v1.0_scaffold00029.74 0.893654256644346 67 AMTR_s00055p00165140 Protein modification.N-linked glycosylation.complex N-glycan maturation.beta-1,2-xylosyltransferase XYLT, ATXYLT, evm_27.TU.AmTr_v1.0_scaffold00055.85 0.8934813249915713 68 AMTR_s00049p00202480 Beta-arabinofuranosyltransferase RAY1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00049.217 0.8932947883234489 70 AMTR_s00007p00204170 Vesicle trafficking.endomembrane trafficking.protein recycling.ubiquitylated cargo adaptors.TOM associated protein evm_27.TU.AmTr_v1.0_scaffold00007.181 0.8931653186835636 71 AMTR_s00061p00084390 Vesicle trafficking.Coat protein II (COPII) coatomer machinery.coat protein complex.Sec23/24 cargo adaptor subcomplex.Sec24 component evm_27.TU.AmTr_v1.0_scaffold00061.60 0.8931107148145175 72 AMTR_s00053p00219090 Protein degradation.peptide tagging.Small-Ubiquitin-like-Modifier (SUMO)-anchor modification (sumoylation).SUMO chain-forming-ligase E4 enzyme (PIAL) evm_27.TU.AmTr_v1.0_scaffold00053.172 0.8924457581955498 73 AMTR_s00135p00112810 Enzyme classification.EC_2 transferases.EC_2.7 transferase transferring phosphorus-containing group FAB1C, evm_27.TU.AmTr_v1.0_scaffold00135.66 0.8909378292474283 76 AMTR_s00048p00233710 evm_27.TU.AmTr_v1.0_scaffold00048.233 0.8907167099950551 100 AMTR_s00166p00076690 Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase guanine nucleotide exchange factor (RAB-GEF) activities.PUF2 plant-specific RAB5 effector evm_27.TU.AmTr_v1.0_scaffold00166.44 0.8891627469655055 80 AMTR_s00046p00153230 evm_27.TU.AmTr_v1.0_scaffold00046.81 0.8891558378133684 81 AMTR_s00007p00185240 evm_27.TU.AmTr_v1.0_scaffold00007.149 0.8886715583903573 83 AMTR_s00022p00114710 RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Brr2 RNA helicase emb1507, evm_27.TU.AmTr_v1.0_scaffold00022.105 0.8876020177339621 85 AMTR_s00057p00195320 evm_27.TU.AmTr_v1.0_scaffold00057.220 0.8871853940624336 86 AMTR_s00007p00182220 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX-2 mRNP trafficking complex.GANP/SAC3 scaffold component evm_27.TU.AmTr_v1.0_scaffold00007.146 0.8869770468860481 87 AMTR_s00002p00140630 Protein biosynthesis.translation initiation.mRNA loading.eIF4F mRNA unwinding complex.eIF4G component CUM2, EIF4G, evm_27.TU.AmTr_v1.0_scaffold00002.103 0.8867259891938706 89 AMTR_s00021p00136760 Transcription factor GTE4 OS=Arabidopsis thaliana GTE4, evm_27.TU.AmTr_v1.0_scaffold00021.92 0.8863867985814755 93 AMTR_s00002p00253550 Protein modification.phosphorylation.CMGC kinase superfamily.SRPK kinase evm_27.TU.AmTr_v1.0_scaffold00002.376 0.8858699664881522 94 AMTR_s00019p00254550 COP1-interactive protein 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.435 0.8857542333413386 95 AMTR_s00057p00206860 RNA biosynthesis.transcriptional activation.JUMONJI transcription factor evm_27.TU.AmTr_v1.0_scaffold00057.248 0.8855995809778474 97 AMTR_s00016p00259070 Protein FRIGIDA OS=Arabidopsis thaliana FRI, FLA, evm_27.TU.AmTr_v1.0_scaffold00016.361 0.8851986116016344 99 AMTR_s00069p00056230 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-HCa-type E3 ligase XBAT33, evm_27.TU.AmTr_v1.0_scaffold00069.34 0.8850888461948446 100