Sequence Description Alias PCC hrr AMTR_s00071p00175860 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic40 component TIC40, ATTIC40, PDE120, evm_27.TU.AmTr_v1.0_scaffold00071.178 0.9316335967659329 8 AMTR_s00078p00105470 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.amylase activities.alpha amylase AMY3, ATAMY3, evm_27.TU.AmTr_v1.0_scaffold00078.76 0.9299821794136393 5 AMTR_s00042p00221280 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen CYP97B3, evm_27.TU.AmTr_v1.0_scaffold00042.72 0.92391893185174 18 AMTR_s00021p00151130 evm_27.TU.AmTr_v1.0_scaffold00021.107 0.9195536419652067 10 AMTR_s00088p00159600 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor evm_27.TU.AmTr_v1.0_scaffold00088.130 0.9156744429561614 5 AMTR_s00012p00251230 evm_27.TU.AmTr_v1.0_scaffold00012.252 0.9114677964204893 6 AMTR_s00068p00029180 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.ZDS zeta-carotene desaturase PDE181, ZDS, SPC1, evm_27.TU.AmTr_v1.0_scaffold00068.6 0.9103485688659062 48 AMTR_s00047p00218860 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.FLN2 regulatory factor FLN2, evm_27.TU.AmTr_v1.0_scaffold00047.167 0.9064425991750658 46 AMTR_s00131p00066980 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea evm_27.TU.AmTr_v1.0_scaffold00131.39 0.9051991852848024 29 AMTR_s00029p00193780 Fructokinase-like 1, chloroplastic OS=Arabidopsis thaliana FLN1, evm_27.TU.AmTr_v1.0_scaffold00029.262 0.9048738739869925 45 AMTR_s00058p00057440 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor EMB93, SOLDAT10, evm_27.TU.AmTr_v1.0_scaffold00058.26 0.9038134330695798 11 AMTR_s00048p00222810 evm_27.TU.AmTr_v1.0_scaffold00048.208 0.9016917942919652 17 AMTR_s00011p00203340 GTPase ERA-like, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00011.71 0.9006283832334008 26 AMTR_s00010p00256310 evm_27.TU.AmTr_v1.0_scaffold00010.391 0.898751309758832 14 AMTR_s00046p00214930 Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana CRR22, evm_27.TU.AmTr_v1.0_scaffold00046.141 0.8982416094583358 39 AMTR_s00001p00173820 Pentatricopeptide repeat-containing protein At2g17033 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00001.164 0.8975526294200366 43 AMTR_s00006p00243670 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00006.123 0.8967481010673518 19 AMTR_s00058p00193720 Protein modification.dephosphorylation.tyrosine protein phosphatase (PTP) superfamily.dual-specificity phosphatase families.LSF phosphoglucan phosphatase LSF1, evm_27.TU.AmTr_v1.0_scaffold00058.193 0.8962419612879665 28 AMTR_s00045p00176400 Probable glutamyl endopeptidase, chloroplastic OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00045.212 0.8950377946702984 55 AMTR_s00036p00227770 Protein translocation.chloroplast.outer envelope TOC translocation system.Toc90/Toc120/Toc132/Toc159 component evm_27.TU.AmTr_v1.0_scaffold00036.169 0.8928153321194179 74 AMTR_s00009p00072720 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor SIGF, SIG6, SOLDAT8, ATSIG6, evm_27.TU.AmTr_v1.0_scaffold00009.21 0.892024250400252 83 AMTR_s00009p00260200 evm_27.TU.AmTr_v1.0_scaffold00009.319 0.8907969060747981 35 AMTR_s00049p00163880 Pentatricopeptide repeat-containing protein At5g50280, chloroplastic OS=Arabidopsis thaliana EMB1006, evm_27.TU.AmTr_v1.0_scaffold00049.150 0.890600314856692 23 AMTR_s00011p00266100 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor SIGB, SIG2, SIGA, SIG1, RPOD1, evm_27.TU.AmTr_v1.0_scaffold00011.228 0.8882773788091431 79 AMTR_s00029p00193710 Fructokinase-like 1, chloroplastic OS=Arabidopsis thaliana FLN1, evm_27.TU.AmTr_v1.0_scaffold00029.261 0.8880980323185887 25 AMTR_s00177p00048180 Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00177.25 0.8876185782540613 91 AMTR_s00068p00065660 evm_27.TU.AmTr_v1.0_scaffold00068.27 0.8872335817309487 38 AMTR_s00057p00165960 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.divinyl chlorophyllide-a 8-vinyl-reductase PCB2, evm_27.TU.AmTr_v1.0_scaffold00057.167 0.887183654943337 28 AMTR_s00007p00268660 evm_27.TU.AmTr_v1.0_scaffold00007.394 0.8871150763064252 35 AMTR_s00036p00206170 evm_27.TU.AmTr_v1.0_scaffold00036.123 0.886549862876413 69 AMTR_s00133p00020030 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.Whirly-type splicing factor ATWHY1, WHY1, PTAC1, evm_27.TU.AmTr_v1.0_scaffold00133.2 0.8857379111150014 55 AMTR_s00074p00121610 Photosynthesis.photophosphorylation.chlororespiration.PTOX terminal oxidase IM1, IM, evm_27.TU.AmTr_v1.0_scaffold00074.38 0.8852142553596537 32 AMTR_s00120p00092320 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen LUT5, CYP97A3, evm_27.TU.AmTr_v1.0_scaffold00120.41 0.8837078912622905 34 AMTR_s00019p00208640 Pentatricopeptide repeat-containing protein At5g10690 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.251 0.8824276927673995 55 AMTR_s00066p00197720 Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.260 0.882419980057726 36 AMTR_s00067p00038470 CJD1, evm_27.TU.AmTr_v1.0_scaffold00067.21 0.8823789785345989 46 AMTR_s00008p00166810 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.starch-debranching activities.isoamylase-type enzyme ATISA3, ISA3, evm_27.TU.AmTr_v1.0_scaffold00008.90 0.8816485379663629 79 AMTR_s00019p00039970 Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana PGR3, evm_27.TU.AmTr_v1.0_scaffold00019.19 0.8801660001179598 41 AMTR_s00269p00014640 Protein modification.protein folding and quality control.protein folding catalyst activities.Parvulin peptidyl-prolyl isomerase evm_27.TU.AmTr_v1.0_scaffold00269.5 0.8789539947288649 43 AMTR_s00163p00072710 Protein biosynthesis.aminoacyl-tRNA synthetase activities.phenylalanine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00163.29 0.8789495403356596 50 AMTR_s00092p00157010 Pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.132 0.8755906907515858 73 AMTR_s00038p00141420 Carbohydrate metabolism.starch metabolism.degradation.maltose metabolism.cytosolic glucanotransferase DPE2, evm_27.TU.AmTr_v1.0_scaffold00038.86 0.874951856157626 46 AMTR_s00099p00089660 evm_27.TU.AmTr_v1.0_scaffold00099.67 0.8749164353478912 92 AMTR_s00061p00166800 Cell cycle.organelle machineries.DNA replication.genome stability maintenance.RecX RecA-activity modulator evm_27.TU.AmTr_v1.0_scaffold00061.170 0.8746988468135881 48 AMTR_s00067p00176230 Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia evm_27.TU.AmTr_v1.0_scaffold00067.180 0.8742339104652119 99 AMTR_s00072p00056850 RNA processing.RNA modification.rRNA/tRNA methylation.TRM5 tRNA guanosine-methyltransferase evm_27.TU.AmTr_v1.0_scaffold00072.25 0.8736526858939102 52 AMTR_s00046p00227230 Uncharacterized protein At4g37920 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00046.167 0.8733130961348935 53 AMTR_s00045p00200960 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.LPA1 protein LPA1, evm_27.TU.AmTr_v1.0_scaffold00045.260 0.8730262978731927 55 AMTR_s00103p00070570 Protein biosynthesis.organelle translation machineries.translation termination.RRF ribosome recycling factor AtcpRRF, HFP108, cpRRF, RRF, evm_27.TU.AmTr_v1.0_scaffold00103.36 0.8702980469548467 94 AMTR_s00160p00077470 evm_27.TU.AmTr_v1.0_scaffold00160.29 0.8690727479198291 66 AMTR_s00010p00223650 Uncharacterized protein At4g37920 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00010.245 0.8687501608012251 69 AMTR_s00101p00049040 evm_27.TU.AmTr_v1.0_scaffold00101.20 0.8684911319233716 70 AMTR_s00012p00252270 evm_27.TU.AmTr_v1.0_scaffold00012.259 0.8683672535611417 71 AMTR_s00027p00237750 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.CUL4-DDB1 ubiquitination complexes.COP10-DET1 (CDD) subcomplex.DET1 regulator component DET1, ATDET1, FUS2, evm_27.TU.AmTr_v1.0_scaffold00027.131 0.8666290969506236 74 AMTR_s00010p00141760 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.dehydroascorbate reductase (DHAR) DHAR3, evm_27.TU.AmTr_v1.0_scaffold00010.104 0.8661820079992744 89 AMTR_s00083p00031040 Photosynthesis.photorespiration.aminotransferases.glutamate-glyoxylate transaminase GGAT1, GGT1, AOAT1, evm_27.TU.AmTr_v1.0_scaffold00083.7 0.8651867833194625 91 AMTR_s00050p00227310 evm_27.TU.AmTr_v1.0_scaffold00050.101 0.8639681384981877 79 AMTR_s00002p00190720 Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.170 0.8637860212156966 98 AMTR_s00130p00019530 Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis thaliana DOT4, evm_27.TU.AmTr_v1.0_scaffold00130.4 0.8634007289476576 86 AMTR_s00030p00124490 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.assembly phase.SUF-B component ATNAP1, ATABC1, ABC1, LAF6, evm_27.TU.AmTr_v1.0_scaffold00030.74 0.8633887259154145 84 AMTR_s00016p00187060 Amino acid metabolism.biosynthesis.shikimate family.shikimate pathway.shikimate kinase ATSKL1, SKL1, evm_27.TU.AmTr_v1.0_scaffold00016.149 0.8633387304065233 85 AMTR_s00077p00168500 evm_27.TU.AmTr_v1.0_scaffold00077.183 0.8630531268263829 86 AMTR_s00161p00056860 Cellular respiration.glycolysis.methylglyoxal degradation.GLX1 lactoyl-glutathione lyase evm_27.TU.AmTr_v1.0_scaffold00161.22 0.8625407482276517 91 AMTR_s00040p00188540 Carbohydrate metabolism.starch metabolism.synthesis.starch branching enzyme SBE2.2, evm_27.TU.AmTr_v1.0_scaffold00040.184 0.8620469159767634 95 AMTR_s00002p00234380 evm_27.TU.AmTr_v1.0_scaffold00002.271 0.8616524864085638 99