Sequence Description Alias PCC hrr AMTR_s00040p00174940 Flagellar radial spoke protein 5 OS=Chlamydomonas reinhardtii evm_27.TU.AmTr_v1.0_scaffold00040.165 0.9281653367519315 12 AMTR_s00028p00245370 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM2-type splicing factor ATCFM2, CFM2, evm_27.TU.AmTr_v1.0_scaffold00028.138 0.9261116102409027 22 AMTR_s00022p00249930 emb2738, evm_27.TU.AmTr_v1.0_scaffold00022.381 0.9196571232703246 24 AMTR_s00049p00107230 evm_27.TU.AmTr_v1.0_scaffold00049.81 0.9188511552822927 37 AMTR_s00039p00096400 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.7-hydroxymethyl chlorophyll(ide) a reductase evm_27.TU.AmTr_v1.0_scaffold00039.54 0.9177379328942801 18 AMTR_s00031p00204460 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.cpSRP54 component 54CP, SRP54CP, CPSRP54, FFC, evm_27.TU.AmTr_v1.0_scaffold00031.99 0.9165814501721463 41 AMTR_s00025p00214840 Probable starch synthase 4, chloroplastic/amyloplastic OS=Arabidopsis thaliana ATSS4, SS4, SSIV, evm_27.TU.AmTr_v1.0_scaffold00025.290 0.9161361683711983 9 AMTR_s00052p00157970 evm_27.TU.AmTr_v1.0_scaffold00052.66 0.9158709310967648 19 AMTR_s00176p00057350 Solute transport.primary active transport.P-type ATPase superfamily.P1 family.HMA P1B-type heavy metal cation-transporting ATPase PAA1, HMA6, evm_27.TU.AmTr_v1.0_scaffold00176.30 0.9136258002523323 12 AMTR_s00058p00093170 evm_27.TU.AmTr_v1.0_scaffold00058.50 0.910297985681909 21 AMTR_s00055p00213550 Polyamine metabolism.spermidine/spermine.degradation.polyamine oxidase APAO, ATPAO1, PAO1, evm_27.TU.AmTr_v1.0_scaffold00055.158 0.9080036302816904 11 AMTR_s00003p00257280 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00003.320 0.9075731773505427 47 AMTR_s00045p00205250 Protein biosynthesis.aminoacyl-tRNA synthetase activities.isoleucine-tRNA ligase OVA2, evm_27.TU.AmTr_v1.0_scaffold00045.272 0.9071382666949709 45 AMTR_s00046p00228230 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL13 component emb1473, evm_27.TU.AmTr_v1.0_scaffold00046.169 0.906529753840516 59 AMTR_s00107p00035950 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL1 component evm_27.TU.AmTr_v1.0_scaffold00107.14 0.9063646461957766 34 AMTR_s00011p00266100 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor SIGB, SIG2, SIGA, SIG1, RPOD1, evm_27.TU.AmTr_v1.0_scaffold00011.228 0.9056562785379342 48 AMTR_s00020p00012640 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea evm_27.TU.AmTr_v1.0_scaffold00020.3 0.9051687575050624 64 AMTR_s00023p00232870 Pentatricopeptide repeat-containing protein At5g02830, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00023.190 0.9046422008841422 30 AMTR_s00006p00252810 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp90 family.Hsp90 protein EMB1956, Hsp88.1, HSP90.5, AtHsp90.5, CR88, evm_27.TU.AmTr_v1.0_scaffold00006.165 0.9045628159997786 39 AMTR_s00008p00118590 Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00008.50 0.9043516951961373 21 AMTR_s00089p00093330 Protein biosynthesis.aminoacyl-tRNA synthetase activities.lysine-tRNA ligase OVA5, ATKRS-2, evm_27.TU.AmTr_v1.0_scaffold00089.48 0.9039498749060461 28 AMTR_s00010p00259490 Coenzyme metabolism.thiamine pyrophosphate synthesis.hydroxymethylpyrimidine diphosphate synthesis.hydroxymethylpyrimidine phosphate synthase (ThiC) THIC, PY, evm_27.TU.AmTr_v1.0_scaffold00010.423 0.902773092374365 24 AMTR_s00026p00112660 Nucleotide metabolism.purines.phosphotransfers.adenylate kinase evm_27.TU.AmTr_v1.0_scaffold00026.52 0.9025953099089402 53 AMTR_s00109p00113060 Redox homeostasis.low-molecular-weight scavengers.tocopherol biosynthesis.tocopherol cyclase (VTE1/TC) ATSDX1, VTE1, evm_27.TU.AmTr_v1.0_scaffold00109.111 0.9025016369242826 33 AMTR_s00040p00213060 Protein translocation.chloroplast.inner envelope TIC translocation system.TIC-20 complex.Tic100 component emb1211, evm_27.TU.AmTr_v1.0_scaffold00040.228 0.9020542824184256 86 AMTR_s00023p00031940 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPP Fe-Zn-dependent phosphatase families.SLP phosphatase evm_27.TU.AmTr_v1.0_scaffold00023.9 0.9019036294651598 26 AMTR_s00001p00220750 evm_27.TU.AmTr_v1.0_scaffold00001.229 0.900256471776902 98 AMTR_s00009p00072720 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor SIGF, SIG6, SOLDAT8, ATSIG6, evm_27.TU.AmTr_v1.0_scaffold00009.21 0.900070072404819 64 AMTR_s00011p00203340 GTPase ERA-like, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00011.71 0.8999722232636032 29 AMTR_s00055p00165940 Protein biosynthesis.aminoacyl-tRNA synthetase activities.threonine-tRNA ligase EMB2761, evm_27.TU.AmTr_v1.0_scaffold00055.86 0.8997885779865838 31 AMTR_s00045p00116920 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecA1 component SECA1, AtcpSecA, AGY1, evm_27.TU.AmTr_v1.0_scaffold00045.113 0.8992954736035496 67 AMTR_s00071p00199450 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCD transporter evm_27.TU.AmTr_v1.0_scaffold00071.217 0.8991340924805361 73 AMTR_s00061p00196800 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group evm_27.TU.AmTr_v1.0_scaffold00061.232 0.8966961080564084 85 AMTR_s00069p00125390 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor CRR1 crr1, evm_27.TU.AmTr_v1.0_scaffold00069.85 0.8944153634441777 35 AMTR_s00142p00060790 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.transfer phase.HCF101 component HCF101, evm_27.TU.AmTr_v1.0_scaffold00142.34 0.8939023883697402 67 AMTR_s00053p00152680 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.CHL-D component V157, PDE166, ALB1, CHLD, ALB-1V, evm_27.TU.AmTr_v1.0_scaffold00053.100 0.8932843432896217 43 AMTR_s00114p00128980 evm_27.TU.AmTr_v1.0_scaffold00114.59 0.8931143344059591 58 AMTR_s00006p00260480 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp60 family.Hsp60 protein evm_27.TU.AmTr_v1.0_scaffold00006.222 0.8926584317299361 51 AMTR_s00007p00219480 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.uroporphyrinogen III decarboxylase HEME2, evm_27.TU.AmTr_v1.0_scaffold00007.207 0.8917342723732093 75 AMTR_s00046p00214930 Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana CRR22, evm_27.TU.AmTr_v1.0_scaffold00046.141 0.8911233320452044 58 AMTR_s00018p00168540 DNA mismatch repair protein MSH1, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00018.94 0.8908906386695811 59 AMTR_s00067p00038470 CJD1, evm_27.TU.AmTr_v1.0_scaffold00067.21 0.8891588697194946 44 AMTR_s00009p00241540 RNA processing.organelle machineries.ribonuclease activities.RNase J endoribonuclease emb2746, evm_27.TU.AmTr_v1.0_scaffold00009.218 0.8884589950756255 69 AMTR_s00007p00156370 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.chlorophyll synthase ChlG CHLG, G4, ATG4, evm_27.TU.AmTr_v1.0_scaffold00007.117 0.8875267773058614 65 AMTR_s00029p00114850 evm_27.TU.AmTr_v1.0_scaffold00029.125 0.8870139875703692 88 AMTR_s00045p00200960 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.LPA1 protein LPA1, evm_27.TU.AmTr_v1.0_scaffold00045.260 0.8867890088290206 48 AMTR_s00002p00029100 Cytoskeleton.cp-actin-dependent plastid movement.KAC accessory motility factor KCA2, KAC2, evm_27.TU.AmTr_v1.0_scaffold00002.13 0.8861948119389635 49 AMTR_s00065p00038950 evm_27.TU.AmTr_v1.0_scaffold00065.17 0.8857941105036046 85 AMTR_s00044p00032580 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP4/FSD3 component FSD3, evm_27.TU.AmTr_v1.0_scaffold00044.9 0.8853713942439142 69 AMTR_s00046p00014960 Rhodanese-like domain-containing protein 9, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00046.2 0.8847416506468446 70 AMTR_s00001p00228610 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF244 protein evm_27.TU.AmTr_v1.0_scaffold00001.239 0.8830564409824615 53 AMTR_s00002p00197820 RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.183 0.8823614709682982 59 AMTR_s00003p00268300 GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00003.397 0.8820700651273511 92 AMTR_s00122p00077720 Photosynthesis.photorespiration.glycerate kinase evm_27.TU.AmTr_v1.0_scaffold00122.28 0.8806157609741957 76 AMTR_s00013p00241300 evm_27.TU.AmTr_v1.0_scaffold00013.201 0.8801380955691689 58 AMTR_s00110p00125590 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.amylase activities.alpha amylase AMY3, ATAMY3, evm_27.TU.AmTr_v1.0_scaffold00110.101 0.8793186820552487 60 AMTR_s00003p00212290 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS1 component RPS1, ARRPS1, evm_27.TU.AmTr_v1.0_scaffold00003.203 0.8782105291990743 95 AMTR_s00103p00115980 Protein TAB2 homolog, chloroplastic OS=Arabidopsis thaliana ATAB2, evm_27.TU.AmTr_v1.0_scaffold00103.69 0.8763729241362376 86 AMTR_s00010p00259680 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease DEGP8, DEG8, evm_27.TU.AmTr_v1.0_scaffold00010.427 0.8759988214854862 68 AMTR_s00002p00267790 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex B.PnsB5/NDH18 component NDH18, evm_27.TU.AmTr_v1.0_scaffold00002.530 0.8756977885179981 69 AMTR_s00010p00055110 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psPSRP3 component evm_27.TU.AmTr_v1.0_scaffold00010.27 0.8751154011740816 95 AMTR_s00092p00096920 Protein biosynthesis.organelle translation machineries.translation initiation.IF-2 initiation factor FUG1, evm_27.TU.AmTr_v1.0_scaffold00092.54 0.8747515187983139 71 AMTR_s00013p00039290 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL27 component RPL27, evm_27.TU.AmTr_v1.0_scaffold00013.7 0.8734170391803802 74 AMTR_s00013p00233820 evm_27.TU.AmTr_v1.0_scaffold00013.185 0.8730722420784894 76 AMTR_s00004p00145140 evm_27.TU.AmTr_v1.0_scaffold00004.142 0.8730547521751918 87 AMTR_s00101p00041820 evm_27.TU.AmTr_v1.0_scaffold00101.13 0.8721976616419774 88 AMTR_s00010p00251120 evm_27.TU.AmTr_v1.0_scaffold00010.357 0.8719490785092678 98 AMTR_s00059p00121300 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.chlorophyll b reductase complex.NOL component NOL, evm_27.TU.AmTr_v1.0_scaffold00059.95 0.8709736527411037 83 AMTR_s00007p00097240 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP2/TAC2 component PTAC2, evm_27.TU.AmTr_v1.0_scaffold00007.57 0.8708520463496435 84 AMTR_s00106p00119930 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp60 family.Hsp60 protein CPN60B, LEN1, evm_27.TU.AmTr_v1.0_scaffold00106.91 0.8705622221961815 87 AMTR_s00147p00104660 evm_27.TU.AmTr_v1.0_scaffold00147.61 0.8701819738280733 88 AMTR_s00092p00149880 Uncharacterized oxidoreductase At1g06690, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.118 0.8694767820361107 90 AMTR_s00019p00172430 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecY1 component SCY1, evm_27.TU.AmTr_v1.0_scaffold00019.172 0.8693411238137052 91 AMTR_s00016p00074040 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCB cytochrome b6 maturation system (system IV).CCB1 component CCB1, evm_27.TU.AmTr_v1.0_scaffold00016.38 0.8689514564979861 93 AMTR_s00133p00054340 PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00133.19 0.8687504299425948 94 AMTR_s00050p00111180 Carbohydrate metabolism.starch metabolism.degradation.dephosphorylation.SEX4-type phosphoglucan phosphatase ATSEX4, ATPTPKIS1, DSP4, SEX4, evm_27.TU.AmTr_v1.0_scaffold00050.23 0.8679571407034397 98