Sequence Description Alias PCC hrr AMTR_s00029p00221060 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL4 component RPL4, evm_27.TU.AmTr_v1.0_scaffold00029.338 0.9388152626948938 8 AMTR_s00043p00203580 RNA processing.organelle machineries.RNA editing.MORF-type RNA editing factor evm_27.TU.AmTr_v1.0_scaffold00043.64 0.9342184897610635 6 AMTR_s00012p00154880 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.ALB3 component ALB3, evm_27.TU.AmTr_v1.0_scaffold00012.92 0.9270053247095725 24 AMTR_s00003p00168720 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.RH3 basal splicing factor emb1138, evm_27.TU.AmTr_v1.0_scaffold00003.145 0.9255780076391513 25 AMTR_s00123p00013920 Coenzyme metabolism.tetrapyrrol biosynthesis.uroporphyrinogen III formation.uroporphyrinogen III synthase ATDUF3, DUF3, HEMD, UROS, ATUROS, evm_27.TU.AmTr_v1.0_scaffold00123.1 0.9103145053618169 5 AMTR_s00008p00109510 Translation factor GUF1 homolog, chloroplastic OS=Vitis vinifera evm_27.TU.AmTr_v1.0_scaffold00008.45 0.9065139384007943 31 AMTR_s00354p00009120 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP3/TAC10 component PTAC10, PDE312, evm_27.TU.AmTr_v1.0_scaffold00354.1 0.9024149678770235 46 AMTR_s00109p00129480 Protein biosynthesis.organelle translation machineries.translation elongation.EF-Ts elongation factor emb2726, evm_27.TU.AmTr_v1.0_scaffold00109.135 0.8999622122025027 41 AMTR_s00001p00259120 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL5 component evm_27.TU.AmTr_v1.0_scaffold00001.365 0.898994588050636 9 AMTR_s00054p00095350 Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-II histone deacetylase ATHDA14, hda14, evm_27.TU.AmTr_v1.0_scaffold00054.32 0.8969178329889461 66 AMTR_s00049p00107230 evm_27.TU.AmTr_v1.0_scaffold00049.81 0.8961826807262702 82 AMTR_s00032p00226710 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.coproporphyrinogen III oxidase activities.HemF oxygen-dependent coproporphyrinogen III oxidase ATCPO-I, LIN2, HEMF1, evm_27.TU.AmTr_v1.0_scaffold00032.243 0.8954575339848331 19 AMTR_s00002p00100650 evm_27.TU.AmTr_v1.0_scaffold00002.59 0.8937563445837347 54 AMTR_s00133p00020030 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.Whirly-type splicing factor ATWHY1, WHY1, PTAC1, evm_27.TU.AmTr_v1.0_scaffold00133.2 0.893735116116466 37 AMTR_s00177p00036720 evm_27.TU.AmTr_v1.0_scaffold00177.14 0.8925681112928069 15 AMTR_s00025p00237880 evm_27.TU.AmTr_v1.0_scaffold00025.357 0.8917550127027112 33 AMTR_s00036p00109340 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL12 component RPL12-A, RPL12, evm_27.TU.AmTr_v1.0_scaffold00036.44 0.8916091826416456 24 AMTR_s00013p00039290 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL27 component RPL27, evm_27.TU.AmTr_v1.0_scaffold00013.7 0.8913143777652542 31 AMTR_s00016p00164160 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp100 protein HSP93-V, DCA1, ATHSP93-V, CLPC, CLPC1, evm_27.TU.AmTr_v1.0_scaffold00016.120 0.8910261480813789 28 AMTR_s00002p00265220 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM3-type splicing factor ATCFM3A, CFM3A, evm_27.TU.AmTr_v1.0_scaffold00002.494 0.8908518960192694 44 AMTR_s00008p00118590 Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00008.50 0.8907266488189949 39 AMTR_s00023p00218670 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL10 | mtRPL10 component evm_27.TU.AmTr_v1.0_scaffold00023.162 0.8890475262652258 22 AMTR_s00109p00140320 Cellular respiration.glycolysis.methylglyoxal degradation.GLX1 lactoyl-glutathione lyase evm_27.TU.AmTr_v1.0_scaffold00109.150 0.8875041434054597 23 AMTR_s00077p00179590 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.Mg-protoporphyrin IX monomethylester cyclase complex.LCAA scaffolding component evm_27.TU.AmTr_v1.0_scaffold00077.201 0.8832798353311723 56 AMTR_s00039p00160690 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb28 protein PSB28, evm_27.TU.AmTr_v1.0_scaffold00039.114 0.8825051687673487 48 AMTR_s00021p00200120 evm_27.TU.AmTr_v1.0_scaffold00021.166 0.8815572961304713 61 AMTR_s00053p00151810 Enzyme classification.EC_6 ligases.EC_6.6 ligase forming nitrogen-metal bond V157, PDE166, ALB1, CHLD, ALB-1V, evm_27.TU.AmTr_v1.0_scaffold00053.99 0.8808657118341611 28 AMTR_s00007p00251190 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor CRR6 CRR6, evm_27.TU.AmTr_v1.0_scaffold00007.284 0.8801716406115848 29 AMTR_s00039p00224840 evm_27.TU.AmTr_v1.0_scaffold00039.204 0.8799237640881981 30 AMTR_s00078p00161460 DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica RH39, evm_27.TU.AmTr_v1.0_scaffold00078.147 0.8786124802327419 94 AMTR_s00028p00227970 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCB cytochrome b6 maturation system (system IV).CCB4 component CCB4, evm_27.TU.AmTr_v1.0_scaffold00028.110 0.8757592452623925 47 AMTR_s00071p00187330 Prolycopene isomerase, chloroplastic OS=Daucus carota evm_27.TU.AmTr_v1.0_scaffold00071.196 0.8752177188620381 88 AMTR_s00010p00055110 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psPSRP3 component evm_27.TU.AmTr_v1.0_scaffold00010.27 0.8744329721120572 96 AMTR_s00137p00042790 Protein biosynthesis.organelle translation machineries.translation initiation.IF-3 initiation factor evm_27.TU.AmTr_v1.0_scaffold00137.14 0.8741119110147052 96 AMTR_s00006p00259220 Coenzyme metabolism.tetrapyrrol biosynthesis.uroporphyrinogen III formation.porphobilinogen synthase HEMB1, evm_27.TU.AmTr_v1.0_scaffold00006.214 0.8730992336488709 40 AMTR_s00164p00068000 Protein degradation.peptidase families.serine-type peptidase activities.chloroplast Clp-type protease complex.ClpR non-proteolytic core component CLPR1, SVR2, NCLPP5, evm_27.TU.AmTr_v1.0_scaffold00164.30 0.8717465940687096 42 AMTR_s00132p00112670 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll breakdown.red chlorophyll catabolite reductase (RCCR) ATRCCR, ACD2, evm_27.TU.AmTr_v1.0_scaffold00132.27 0.8687206867025162 80 AMTR_s00032p00120910 RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor IDD4, AtIDD4, evm_27.TU.AmTr_v1.0_scaffold00032.84 0.8682325202185207 56 AMTR_s00163p00031970 evm_27.TU.AmTr_v1.0_scaffold00163.9 0.8680332866860191 100 AMTR_s00126p00110160 RNA processing.organelle machineries.RNA splicing.mitochondrial RNA splicing.group-II intron splicing.PMH RNA helicase PMH2, ATRH53, evm_27.TU.AmTr_v1.0_scaffold00126.53 0.8678550225540772 54 AMTR_s00001p00208370 evm_27.TU.AmTr_v1.0_scaffold00001.211 0.8673025015340757 49 AMTR_s00003p00201470 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS17 component RPS17, CS17, PRPS17, evm_27.TU.AmTr_v1.0_scaffold00003.188 0.8669170698427615 50 AMTR_s00001p00272500 evm_27.TU.AmTr_v1.0_scaffold00001.534 0.8653092921432203 52 AMTR_s00037p00164200 Carbohydrate metabolism.starch metabolism.synthesis.starch synthase activities.SSIII-type starch synthase ATSS3, SS3, evm_27.TU.AmTr_v1.0_scaffold00037.78 0.8649753535573563 54 AMTR_s00007p00061550 RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor JKD, evm_27.TU.AmTr_v1.0_scaffold00007.32 0.8648515286227676 55 AMTR_s00160p00027870 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS5 component evm_27.TU.AmTr_v1.0_scaffold00160.6 0.8635923647703155 57 AMTR_s00005p00203240 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP3/TAC10 component PTAC10, PDE312, evm_27.TU.AmTr_v1.0_scaffold00005.80 0.861583168574824 60 AMTR_s00055p00224220 Carbohydrate metabolism.starch metabolism.synthesis.starch branching enzyme EMB2729, BE1, evm_27.TU.AmTr_v1.0_scaffold00055.175 0.8594957254349823 98 AMTR_s00024p00238310 YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana YLMG2, ATYLMG2, evm_27.TU.AmTr_v1.0_scaffold00024.270 0.8589611540986511 65 AMTR_s00065p00043720 Redox homeostasis.hydrogen peroxide removal.glutathione peroxidase GPX1, ATGPX1, evm_27.TU.AmTr_v1.0_scaffold00065.18 0.8586014006262779 67 AMTR_s00126p00013900 Protein modification.peptide maturation.mitochondrion.PreP organellar peptidasome ATPREP1, PREP1, ATZNMP, evm_27.TU.AmTr_v1.0_scaffold00126.1 0.8571321928257394 88 AMTR_s00107p00020160 Redox homeostasis.chloroplast redox homeostasis.NADPH-dependent thioredoxin reductase NTRC, evm_27.TU.AmTr_v1.0_scaffold00107.3 0.8553811129390545 71 AMTR_s00016p00227430 Multi-process regulation.circadian clock.morning element regulation.TCP20 activation factor AT-TCP20, TCP20, PCF1, ATTCP20, evm_27.TU.AmTr_v1.0_scaffold00016.212 0.8549828207754174 89 AMTR_s00029p00223030 Lipid metabolism.galactolipid and sulfolipid synthesis.UDP-sulfoquinovose:DAG sulfoquinovosyltransferase SQD2, evm_27.TU.AmTr_v1.0_scaffold00029.342 0.8538931095116258 88 AMTR_s00166p00060690 RNA processing.organelle machineries.RNA editing.plastidial RNA editing.CP31 RNA editing factor ATRBP31, CP31, ATRBP33, RBP31, evm_27.TU.AmTr_v1.0_scaffold00166.36 0.8531854096473646 83 AMTR_s00120p00080910 evm_27.TU.AmTr_v1.0_scaffold00120.38 0.8522745878552709 78 AMTR_s00011p00258380 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor ATSIG1, SIGB, ATSIG2, ABC1, SIG2, SIGA, SIG1, evm_27.TU.AmTr_v1.0_scaffold00011.182 0.85138144561938 98 AMTR_s00045p00075400 Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidopsis thaliana EMB2750, evm_27.TU.AmTr_v1.0_scaffold00045.65 0.8512510275156668 82 AMTR_s00025p00151950 RNA biosynthesis.transcriptional activation.MYB superfamily.G2-like GARP transcription factor evm_27.TU.AmTr_v1.0_scaffold00025.171 0.8498843369022958 84 AMTR_s00097p00060630 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.LCY-b lycopene beta cyclase LYC, evm_27.TU.AmTr_v1.0_scaffold00097.13 0.8487945909932004 92 AMTR_s00071p00117740 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp70 family.DnaK protein cpHsc70-1, evm_27.TU.AmTr_v1.0_scaffold00071.92 0.8482638289874049 95 AMTR_s00011p00136520 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP8/TAC6 component PTAC6, evm_27.TU.AmTr_v1.0_scaffold00011.39 0.848263263680647 90 AMTR_s00002p00212650 Enzyme classification.EC_1 oxidoreductases.EC_1.8 oxidoreductase acting on sulfur group of donor PMSR4, evm_27.TU.AmTr_v1.0_scaffold00002.223 0.848156280818863 91 AMTR_s00086p00123520 evm_27.TU.AmTr_v1.0_scaffold00086.67 0.8478693588815541 92 AMTR_s00149p00031690 Protein biosynthesis.organelle translation machineries.translation elongation.EF-G elongation factor ATSCO1/CPEF-G, SCO1, ATSCO1, evm_27.TU.AmTr_v1.0_scaffold00149.10 0.8469960207850252 94 AMTR_s00024p00200150 YlmG homolog protein 1-2, chloroplastic OS=Arabidopsis thaliana YLMG1-2, ATYLMG1-2, evm_27.TU.AmTr_v1.0_scaffold00024.175 0.8454274553461589 96