Sequence Description Alias PCC hrr AMTR_s00012p00135630 Protein modification.phosphorylation.atypical kinase families.RIO kinase evm_27.TU.AmTr_v1.0_scaffold00012.69 0.9469876836906898 1 AMTR_s00059p00033770 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF2A factor evm_27.TU.AmTr_v1.0_scaffold00059.16 0.9373096374910268 2 AMTR_s00155p00051130 Obg-like ATPase 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00155.25 0.9342755431482156 3 AMTR_s00048p00141020 Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00048.89 0.9244078558659293 11 AMTR_s00092p00062310 Coenzyme metabolism.NAD/NADP biosynthesis.NAD synthase evm_27.TU.AmTr_v1.0_scaffold00092.27 0.9235086341222348 20 AMTR_s00065p00054920 Proline iminopeptidase OS=Arabidopsis thaliana PIP, evm_27.TU.AmTr_v1.0_scaffold00065.28 0.9202232498453007 6 AMTR_s00021p00235220 Probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00021.236 0.9183206511282349 7 AMTR_s00021p00196170 evm_27.TU.AmTr_v1.0_scaffold00021.158 0.9176000867699067 8 AMTR_s00007p00199090 evm_27.TU.AmTr_v1.0_scaffold00007.172 0.9172401593423765 9 AMTR_s00010p00221510 RNA processing.RNA modification.rRNA/tRNA methylation.TRM9-TRM112 tRNA uridine-methyltransferase complex.TRM9 component evm_27.TU.AmTr_v1.0_scaffold00010.238 0.9161158200258128 10 AMTR_s00031p00154540 F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00031.69 0.9149060402845344 11 AMTR_s00036p00170130 Nudix hydrolase 3 OS=Arabidopsis thaliana atnudt3, NUDT3, evm_27.TU.AmTr_v1.0_scaffold00036.84 0.9115396277098242 44 AMTR_s00128p00114010 Acylamino-acid-releasing enzyme 1 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00128.43 0.9107024418276761 43 AMTR_s00072p00067600 Ubiquitin carboxyl-terminal hydrolase 14 OS=Arabidopsis thaliana ATUBP14, TTN6, PER1, UBP14, evm_27.TU.AmTr_v1.0_scaffold00072.29 0.9103682766437531 66 AMTR_s00027p00246570 Chaperone protein dnaJ GFA2, mitochondrial OS=Arabidopsis thaliana GFA2, evm_27.TU.AmTr_v1.0_scaffold00027.154 0.9088779722455402 31 AMTR_s00039p00083280 Secondary metabolism.nitrogen-containing secondary compounds.glucosinolates.glucosinolate synthesis.methylthioalkylmalate isomerase.large subunit ATLEUC1, IIL1, evm_27.TU.AmTr_v1.0_scaffold00039.46 0.9083467586331333 30 AMTR_s00036p00071330 Developmentally-regulated G-protein 2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00036.25 0.9074156548565886 52 AMTR_s00016p00241100 ALBINO3-like protein 3, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00016.254 0.9070065656424403 20 AMTR_s00056p00172610 Endoribonuclease YBEY, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00056.150 0.9064422652335261 24 AMTR_s00008p00028880 RNA processing.RNA modification.rRNA/tRNA methylation.TRM4 tRNA cytidine-methyltransferase evm_27.TU.AmTr_v1.0_scaffold00008.9 0.9062151653326408 21 AMTR_s00071p00175860 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic40 component TIC40, ATTIC40, PDE120, evm_27.TU.AmTr_v1.0_scaffold00071.178 0.906173894910922 48 AMTR_s00102p00018040 DNA damage response.DNA repair mechanisms.base excision repair (BER).DNA ligase (LIG1) ATLIG1, LIG1, evm_27.TU.AmTr_v1.0_scaffold00102.3 0.9061709658062014 78 AMTR_s00027p00246350 Chaperone protein dnaJ GFA2, mitochondrial OS=Arabidopsis thaliana GFA2, evm_27.TU.AmTr_v1.0_scaffold00027.153 0.9045872403150067 26 AMTR_s00182p00050050 Protein degradation.peptidase families.serine-type peptidase activities.S28 serine carboxypeptidase evm_27.TU.AmTr_v1.0_scaffold00182.30 0.9045132550313513 25 AMTR_s00022p00147990 Cell wall.pectin.rhamnogalacturonan II.synthesis.2-keto-3-deoxymanno-octulosonic acid (KDO) synthesis.CMP-KDO synthetase KDSB, evm_27.TU.AmTr_v1.0_scaffold00022.144 0.9040825487340367 26 AMTR_s00010p00225110 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor evm_27.TU.AmTr_v1.0_scaffold00010.248 0.9038064100987564 27 AMTR_s00057p00038540 Protein biosynthesis.aminoacyl-tRNA synthetase activities.serine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00057.18 0.9021107339876696 28 AMTR_s00046p00223780 Protein degradation.peptidase families.metallopeptidase activities.M3 protease evm_27.TU.AmTr_v1.0_scaffold00046.160 0.9016196177119677 32 AMTR_s00067p00136180 Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. japonica 0.9015236469559202 38 AMTR_s00020p00040210 Enzyme classification.EC_1 oxidoreductases.EC_1.3 oxidoreductase acting on CH-CH group of donor evm_27.TU.AmTr_v1.0_scaffold00020.11 0.9012236022125172 32 AMTR_s00025p00124790 Pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00025.114 0.9003061136984909 33 AMTR_s00061p00067260 High mobility group B protein 15 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00061.42 0.8999904069800049 42 AMTR_s00014p00128310 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.lysine.diaminopimelate decarboxylase evm_27.TU.AmTr_v1.0_scaffold00014.46 0.8992712205620269 59 AMTR_s00048p00111750 UV-B-induced protein At3g17800, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00048.57 0.898978775093537 37 AMTR_s00017p00179100 Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00017.92 0.8971520276962267 40 AMTR_s00009p00244590 evm_27.TU.AmTr_v1.0_scaffold00009.231 0.8969763092554984 58 AMTR_s00066p00115140 Protein biosynthesis.aminoacyl-tRNA synthetase activities.tryptophan-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00066.107 0.895762123757212 42 AMTR_s00002p00207490 evm_27.TU.AmTr_v1.0_scaffold00002.209 0.8949269111500369 44 AMTR_s00039p00150510 Protein biosynthesis.aminoacyl-tRNA synthetase activities.glutamyl-tRNA-dependent amidotransferase complex.GatB component GATB, evm_27.TU.AmTr_v1.0_scaffold00039.103 0.8943325650637801 46 AMTR_s00001p00257310 Serine/threonine-protein kinase/endoribonuclease IRE1b OS=Arabidopsis thaliana ATIRE1-1, IRE1-1, evm_27.TU.AmTr_v1.0_scaffold00001.349 0.894226374000629 47 AMTR_s00247p00015290 Protein modification.dephosphorylation.tyrosine protein phosphatase (PTP) superfamily.classical PTP phosphatase ATPTP1, PTP1, evm_27.TU.AmTr_v1.0_scaffold00247.3 0.8938155811368598 74 AMTR_s00158p00082100 Protein modification.phosphorylation.CAMK kinase superfamily.CDPK kinase CPK3, CDPK6, evm_27.TU.AmTr_v1.0_scaffold00158.18 0.8937714106016478 49 AMTR_s00099p00119010 Cell cycle.mitosis and meiosis.sister chromatid separation.spindle assembly checkpoint machinery.MAD1 checkpoint protein evm_27.TU.AmTr_v1.0_scaffold00099.101 0.892253753073447 76 AMTR_s00062p00185880 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp60 family.Hsp60 protein CH-CPN60A, CPN60A, SLP, evm_27.TU.AmTr_v1.0_scaffold00062.184 0.8919916424065782 53 AMTR_s00003p00166290 Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00003.141 0.890861563963787 55 AMTR_s00018p00217640 RNA processing.RNA 5-end cap adding.mRNA capping enzyme evm_27.TU.AmTr_v1.0_scaffold00018.140 0.890682124797514 56 AMTR_s00094p00126180 evm_27.TU.AmTr_v1.0_scaffold00094.12 0.8903180765485611 58 AMTR_s00056p00184430 evm_27.TU.AmTr_v1.0_scaffold00056.164 0.8894594947701808 61 AMTR_s00071p00172900 ECT11, evm_27.TU.AmTr_v1.0_scaffold00071.175 0.889032439567169 62 AMTR_s00009p00268610 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U4/U6 small nuclear ribonucleoprotein particle (snRNP).PRPF31 snRNP component emb1220, evm_27.TU.AmTr_v1.0_scaffold00009.430 0.8887828957254111 65 AMTR_s00053p00089490 Pentatricopeptide repeat-containing protein At3g61520, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00053.44 0.888344041761011 68 AMTR_s00010p00250130 RNA processing.RNA modification.pseudouridylation.TruA-type tRNA pseudouridine synthase evm_27.TU.AmTr_v1.0_scaffold00010.350 0.8880362910788744 69 AMTR_s00007p00266810 DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00007.378 0.8868586758193338 94 AMTR_s00009p00185150 Protein modification.ADP-ribosylation.poly(ADP-ribose) polymerase (PARP) ATPARP2, PARP2, evm_27.TU.AmTr_v1.0_scaffold00009.115 0.8865449939195367 75 AMTR_s00006p00083160 evm_27.TU.AmTr_v1.0_scaffold00006.30 0.8863659505702361 76 AMTR_s00061p00192780 DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana RPAC43, ATRPAC43, evm_27.TU.AmTr_v1.0_scaffold00061.222 0.8861561598768417 77 AMTR_s00148p00042460 Protein degradation.peptidase families.metallopeptidase activities.carboxypeptidase activities.M28 carboxypeptidase evm_27.TU.AmTr_v1.0_scaffold00148.21 0.8855997752991862 79 AMTR_s00004p00111480 RNA processing.RNA decay.exosome complex.associated co-factors.RRP6L exoribonuclease evm_27.TU.AmTr_v1.0_scaffold00004.91 0.8835997992348832 83 AMTR_s00088p00132770 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.HPE1 splicing factor evm_27.TU.AmTr_v1.0_scaffold00088.99 0.8835855588035516 84 AMTR_s00010p00234800 RNA processing.organelle machineries.RNA splicing.mitochondrial RNA splicing.group-II intron splicing.mTERF splicing factor evm_27.TU.AmTr_v1.0_scaffold00010.279 0.8834264825032473 85 AMTR_s00104p00122950 Pentatricopeptide repeat-containing protein At1g52620 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00104.52 0.882359043234402 88 AMTR_s00026p00039130 evm_27.TU.AmTr_v1.0_scaffold00026.13 0.8822782128234684 89 AMTR_s00001p00247720 RNA processing.RNA modification.thiolation.CTU1-URM1 pathway.CTU1-CTU2 tRNA thiouridylase complex.CTU1 component ROL5, evm_27.TU.AmTr_v1.0_scaffold00001.303 0.8814863282302271 91 AMTR_s00077p00102160 Rhodanese-like domain-containing protein 7 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00077.85 0.8787610026588294 99 AMTR_s00151p00075000 Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00151.16 0.8786413338921087 100