Sequence Description Alias PCC hrr AMTR_s00011p00266560 RNA processing.organelle machineries.RNA editing.plastidial RNA editing.AEF1 RNA editing factor evm_27.TU.AmTr_v1.0_scaffold00011.231 0.9180839949893635 5 AMTR_s00016p00252780 Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana 0.9175946313899962 10 AMTR_s00066p00130420 Rhodanese-like domain-containing protein 4A, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.123 0.9156744429561614 5 AMTR_s00045p00176400 Probable glutamyl endopeptidase, chloroplastic OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00045.212 0.9091899314761954 20 AMTR_s00071p00175860 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic40 component TIC40, ATTIC40, PDE120, evm_27.TU.AmTr_v1.0_scaffold00071.178 0.9090613653633357 40 AMTR_s00067p00038470 CJD1, evm_27.TU.AmTr_v1.0_scaffold00067.21 0.9086623924994813 6 AMTR_s00052p00118920 Carbon catabolite repressor protein 4 homolog 6 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00052.39 0.9060542857109463 23 AMTR_s00019p00172430 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecY1 component SCY1, evm_27.TU.AmTr_v1.0_scaffold00019.172 0.9046591962917084 9 AMTR_s00024p00225420 Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00024.224 0.9033682763439113 20 AMTR_s00002p00190720 Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.170 0.8990269119242088 20 AMTR_s00133p00020030 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.Whirly-type splicing factor ATWHY1, WHY1, PTAC1, evm_27.TU.AmTr_v1.0_scaffold00133.2 0.8983613742583988 24 AMTR_s00029p00193780 Fructokinase-like 1, chloroplastic OS=Arabidopsis thaliana FLN1, evm_27.TU.AmTr_v1.0_scaffold00029.262 0.89772149440968 63 AMTR_s00009p00236210 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP11/MURE component MURE, PDE316, ATMURE, evm_27.TU.AmTr_v1.0_scaffold00009.196 0.8974717303623981 40 AMTR_s00010p00223650 Uncharacterized protein At4g37920 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00010.245 0.8974506378043013 14 AMTR_s00011p00233950 Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana 0.8947443052190307 44 AMTR_s00003p00075520 Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GUN1, evm_27.TU.AmTr_v1.0_scaffold00003.43 0.893811507189392 37 AMTR_s00012p00204440 Lipid metabolism.lipid transport.plastidial lipid import.TGD lipid importer complex.TGD2 substrate binding component TGD2, evm_27.TU.AmTr_v1.0_scaffold00012.139 0.891578108408655 57 AMTR_s00055p00224220 Carbohydrate metabolism.starch metabolism.synthesis.starch branching enzyme EMB2729, BE1, evm_27.TU.AmTr_v1.0_scaffold00055.175 0.8908932345333647 21 AMTR_s00081p00056740 Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OTP82, evm_27.TU.AmTr_v1.0_scaffold00081.18 0.8908027409026839 19 AMTR_s00039p00096400 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.7-hydroxymethyl chlorophyll(ide) a reductase evm_27.TU.AmTr_v1.0_scaffold00039.54 0.8903864999049507 59 AMTR_s00010p00220510 RNA processing.organelle machineries.RNA editing.plastidial RNA editing.SEL1/PDM1 RNA editing factor evm_27.TU.AmTr_v1.0_scaffold00010.234 0.8897703642936313 21 AMTR_s00009p00072720 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor SIGF, SIG6, SOLDAT8, ATSIG6, evm_27.TU.AmTr_v1.0_scaffold00009.21 0.8893580008990037 93 AMTR_s00030p00238130 At-RS31a, RS31a, evm_27.TU.AmTr_v1.0_scaffold00030.204 0.8861903438157175 24 AMTR_s00040p00181990 Neutral/alkaline invertase 3, chloroplastic OS=Oryza sativa subsp. japonica INV-E, At-A/N-InvE, evm_27.TU.AmTr_v1.0_scaffold00040.175 0.8846351857079473 59 AMTR_s00002p00266310 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.glutathione reductase (GR) GR, EMB2360, ATGR2, evm_27.TU.AmTr_v1.0_scaffold00002.507 0.8840070337464816 68 AMTR_s00092p00052470 Pentatricopeptide repeat-containing protein At1g53600, mitochondrial OS=Arabidopsis thaliana 0.8820348158241904 61 AMTR_s00099p00074160 Pentatricopeptide repeat-containing protein At1g02060, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00099.55 0.880429097477767 30 AMTR_s00033p00075910 emb1273, evm_27.TU.AmTr_v1.0_scaffold00033.33 0.8793909025314187 35 AMTR_s00083p00031040 Photosynthesis.photorespiration.aminotransferases.glutamate-glyoxylate transaminase GGAT1, GGT1, AOAT1, evm_27.TU.AmTr_v1.0_scaffold00083.7 0.8778044444177857 57 AMTR_s00078p00105470 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.amylase activities.alpha amylase AMY3, ATAMY3, evm_27.TU.AmTr_v1.0_scaffold00078.76 0.8776147175550525 72 AMTR_s00001p00224830 evm_27.TU.AmTr_v1.0_scaffold00001.236 0.8772893533168624 90 AMTR_s00149p00067630 Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00149.44 0.8766164217238596 38 AMTR_s00092p00109950 Homeobox-DDT domain protein RLT3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.68 0.8760576104186633 68 AMTR_s00103p00143070 Pentatricopeptide repeat-containing protein At3g02330, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00103.100 0.8755792801286468 46 AMTR_s00041p00057360 evm_27.TU.AmTr_v1.0_scaffold00041.29 0.8751655941765288 40 AMTR_s00090p00180780 ISE2, PDE317, EMB25, evm_27.TU.AmTr_v1.0_scaffold00090.111 0.8748025045657942 42 AMTR_s00039p00053980 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00039.21 0.8735415526803737 97 AMTR_s00155p00018120 Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00155.7 0.8735336567917772 47 AMTR_s00149p00067730 evm_27.TU.AmTr_v1.0_scaffold00149.45 0.8735043285650269 45 AMTR_s00011p00203340 GTPase ERA-like, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00011.71 0.8727520857259317 91 AMTR_s00029p00193710 Fructokinase-like 1, chloroplastic OS=Arabidopsis thaliana FLN1, evm_27.TU.AmTr_v1.0_scaffold00029.261 0.8712854394922839 47 AMTR_s00163p00072710 Protein biosynthesis.aminoacyl-tRNA synthetase activities.phenylalanine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00163.29 0.8698413841569563 79 AMTR_s00092p00157010 Pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.132 0.869225781477814 92 AMTR_s00008p00118590 Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00008.50 0.8690487618807924 87 AMTR_s00007p00268210 Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00007.390 0.8689997946075401 55 AMTR_s00027p00237750 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.CUL4-DDB1 ubiquitination complexes.COP10-DET1 (CDD) subcomplex.DET1 regulator component DET1, ATDET1, FUS2, evm_27.TU.AmTr_v1.0_scaffold00027.131 0.8688408701661823 56 AMTR_s00032p00177680 Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00032.153 0.8686147678640636 57 AMTR_s00099p00036710 Pentatricopeptide repeat-containing protein At1g71490 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00099.22 0.8685133250192927 58 AMTR_s00148p00072380 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris evm_27.TU.AmTr_v1.0_scaffold00148.47 0.8680781161924923 60 AMTR_s00031p00067070 Pentatricopeptide repeat-containing protein At5g03800 OS=Arabidopsis thaliana emb1899, EMB175, EMB166 0.8672734465002037 69 AMTR_s00025p00155620 Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00025.175 0.863794006792096 72 AMTR_s00049p00223850 Pentatricopeptide repeat-containing protein At3g48250, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00049.266 0.8633473404892578 74 AMTR_s00016p00227430 Multi-process regulation.circadian clock.morning element regulation.TCP20 activation factor AT-TCP20, TCP20, PCF1, ATTCP20, evm_27.TU.AmTr_v1.0_scaffold00016.212 0.8632807315052933 75 AMTR_s00056p00043140 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.CRS2-CAF splicing factor complexes.CAF component ATCAF1, CAF1, evm_27.TU.AmTr_v1.0_scaffold00056.26 0.862559179552712 100 AMTR_s00119p00102250 evm_27.TU.AmTr_v1.0_scaffold00119.81 0.8624469563908439 79 AMTR_s00065p00008520 Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00065.1 0.861795054664376 82 AMTR_s00130p00019530 Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis thaliana DOT4, evm_27.TU.AmTr_v1.0_scaffold00130.4 0.8617904405690865 92 AMTR_s00050p00227310 evm_27.TU.AmTr_v1.0_scaffold00050.101 0.8591611699910383 86 AMTR_s00039p00023570 Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana EMB2758 0.8588654642487716 89 AMTR_s00177p00028500 Pentatricopeptide repeat-containing protein At2g03380, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00177.5 0.8567734500585611 94 AMTR_s00129p00082590 Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00129.60 0.855968760975281 97 AMTR_s00111p00145980 Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00111.128 0.855962247880969 98 AMTR_s00021p00241290 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.WTF1 basal splicing factor WTF1, AtWTF1, evm_27.TU.AmTr_v1.0_scaffold00021.253 0.8556854413578048 100