Sequence Description Alias PCC hrr AMTR_s00025p00126870 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb32 protein TLP18.3, evm_27.TU.AmTr_v1.0_scaffold00025.118 0.946451135254283 8 AMTR_s00062p00189550 Cellular respiration.glycolysis.plastidial glycolysis.phosphoglycerate kinase PGK1, evm_27.TU.AmTr_v1.0_scaffold00062.192 0.9400364796418329 6 AMTR_s00018p00243310 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.Mg-protoporphyrin IX O-methyltransferase CHLM, evm_27.TU.AmTr_v1.0_scaffold00018.150 0.9243493482617513 11 AMTR_s00149p00054540 Photosynthesis.photorespiration.glycine cleavage system.H-protein lipoamide-containing component evm_27.TU.AmTr_v1.0_scaffold00149.34 0.9237095865797516 31 AMTR_s00098p00157610 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.oxygen-evolving center (OEC) extrinsic proteins.Viridiplantae-specific components.OEC16 component PsbQ PSBQ-2, PSII-Q, PSBQ, evm_27.TU.AmTr_v1.0_scaffold00098.46 0.9229696926549388 32 AMTR_s00061p00032260 RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana PDE322, CP33, evm_27.TU.AmTr_v1.0_scaffold00061.6 0.9225503942804475 9 AMTR_s00007p00081670 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.oxygen-evolving center (OEC) extrinsic proteins.Viridiplantae-specific components.OEC23 component PsbP OE23, OEE2, PSBP-1, PSII-P, evm_27.TU.AmTr_v1.0_scaffold00007.46 0.9207014159461315 28 AMTR_s00012p00257120 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC16 component PTAC16, evm_27.TU.AmTr_v1.0_scaffold00012.301 0.9203708884076515 39 AMTR_s00025p00041760 Carbohydrate metabolism.starch metabolism.synthesis.ADP-glucose pyrophosphorylase APL1, ADG2, evm_27.TU.AmTr_v1.0_scaffold00025.20 0.9184363471197444 22 AMTR_s00016p00108610 Photosynthesis.photophosphorylation.linear electron flow.ferredoxin-NADP reductase (FNR) activity.ferredoxin-NADP oxidoreductase FNR1, ATLFNR1, evm_27.TU.AmTr_v1.0_scaffold00016.69 0.9182830975011127 56 AMTR_s00001p00271310 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.xanthophyll synthesis.carotenoid epsilon ring hydroxylase CYP97C1, LUT1, evm_27.TU.AmTr_v1.0_scaffold00001.484 0.9176938600473481 12 AMTR_s00003p00212290 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS1 component RPS1, ARRPS1, evm_27.TU.AmTr_v1.0_scaffold00003.203 0.9164584111333645 19 AMTR_s00071p00185160 evm_27.TU.AmTr_v1.0_scaffold00071.193 0.9138272547844183 13 AMTR_s00029p00122880 Disease resistance protein RPS5 OS=Arabidopsis thaliana RPS5, evm_27.TU.AmTr_v1.0_scaffold00029.137 0.9097836048068001 31 AMTR_s00005p00239290 Coenzyme metabolism.thiamine pyrophosphate synthesis.thiazole synthesis.biosynthetic protein (Thi4) TZ, THI4, THI1, evm_27.TU.AmTr_v1.0_scaffold00005.125 0.9064064108052399 15 AMTR_s00025p00042290 Carbohydrate metabolism.starch metabolism.synthesis.ADP-glucose pyrophosphorylase APL1, ADG2, evm_27.TU.AmTr_v1.0_scaffold00025.21 0.9061969183360984 36 AMTR_s00122p00139490 Root phototropism protein 3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00122.75 0.9034997606029135 17 AMTR_s00059p00176390 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.oxygen-evolving center (OEC) extrinsic proteins.OEC33 component PsbO OEC33, PSBO-2, PSBO2, evm_27.TU.AmTr_v1.0_scaffold00059.181 0.9031822596433994 50 AMTR_s00079p00061090 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo dimer.small subunit evm_27.TU.AmTr_v1.0_scaffold00079.19 0.9022616508690529 46 AMTR_s00016p00251680 Photosynthesis.calvin cycle.glyceraldehyde 3-phosphate dehydrogenase GAPA-1, GAPA, evm_27.TU.AmTr_v1.0_scaffold00016.302 0.9016443569775991 47 AMTR_s00016p00073950 evm_27.TU.AmTr_v1.0_scaffold00016.37 0.8985552364266969 33 AMTR_s00099p00163300 RNA biosynthesis.transcriptional activation.NAC transcription factor ANAC034, LOV1, ANAC035, NAC035, evm_27.TU.AmTr_v1.0_scaffold00099.164 0.8984602994505095 32 AMTR_s00024p00218080 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.component PsbX evm_27.TU.AmTr_v1.0_scaffold00024.208 0.8981483579707807 41 AMTR_s00007p00263960 Redox homeostasis.chloroplast redox homeostasis.2-Cys peroxiredoxin activities.atypical 2-Cys peroxiredoxin (PrxQ) ATPRX Q, evm_27.TU.AmTr_v1.0_scaffold00007.343 0.8979749572016043 36 AMTR_s00077p00179590 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.Mg-protoporphyrin IX monomethylester cyclase complex.LCAA scaffolding component evm_27.TU.AmTr_v1.0_scaffold00077.201 0.896929859798273 35 AMTR_s00004p00107700 Protein modification.peptide maturation.plastid.EGY protease EGY1, evm_27.TU.AmTr_v1.0_scaffold00004.86 0.8963133679063285 63 AMTR_s00049p00157390 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.component PsbY YCF32, PSBY, evm_27.TU.AmTr_v1.0_scaffold00049.142 0.8931735495491261 65 AMTR_s00093p00107560 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor CRR3 evm_27.TU.AmTr_v1.0_scaffold00093.37 0.8927243595292008 56 AMTR_s00007p00097240 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP2/TAC2 component PTAC2, evm_27.TU.AmTr_v1.0_scaffold00007.57 0.8927224481641721 29 AMTR_s00078p00084050 evm_27.TU.AmTr_v1.0_scaffold00078.57 0.8925474994072821 54 AMTR_s00021p00200120 evm_27.TU.AmTr_v1.0_scaffold00021.166 0.8917151823217659 35 AMTR_s00054p00125650 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL21 component evm_27.TU.AmTr_v1.0_scaffold00054.40 0.8915835335995946 44 AMTR_s00032p00148610 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.component PsbTn PSBTN, evm_27.TU.AmTr_v1.0_scaffold00032.114 0.891403593405349 41 AMTR_s00034p00145870 evm_27.TU.AmTr_v1.0_scaffold00034.44 0.8912021473528299 34 AMTR_s00011p00241810 External stimuli response.light.UV-A/blue light.cryptochrome-mediated photoperception.CIB transcriptional regulator CIB1, evm_27.TU.AmTr_v1.0_scaffold00011.138 0.8909407204848432 35 AMTR_s00029p00223030 Lipid metabolism.galactolipid and sulfolipid synthesis.UDP-sulfoquinovose:DAG sulfoquinovosyltransferase SQD2, evm_27.TU.AmTr_v1.0_scaffold00029.342 0.8906628737678959 36 AMTR_s00071p00016000 Redox homeostasis.chloroplast redox homeostasis.M-type thioredoxin ATHM2, evm_27.TU.AmTr_v1.0_scaffold00071.5 0.8899549481292657 57 AMTR_s00036p00109340 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL12 component RPL12-A, RPL12, evm_27.TU.AmTr_v1.0_scaffold00036.44 0.8895602532421586 38 AMTR_s00099p00139960 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb5-type component LHCB5, evm_27.TU.AmTr_v1.0_scaffold00099.124 0.8890875773596304 59 AMTR_s00003p00168720 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.RH3 basal splicing factor emb1138, evm_27.TU.AmTr_v1.0_scaffold00003.145 0.8886729929790147 93 AMTR_s00152p00085890 Photosynthesis.photorespiration.hydroxypyruvate reductase HPR, ATHPR1, evm_27.TU.AmTr_v1.0_scaffold00152.29 0.8882376084914955 74 AMTR_s00061p00059490 Photosynthesis.photophosphorylation.photosystem I.LHC-I complex.LHCa3-type component LHCA3, evm_27.TU.AmTr_v1.0_scaffold00061.34 0.8880571619862657 55 AMTR_s00092p00167540 Enzyme classification.EC_6 ligases.EC_6.6 ligase forming nitrogen-metal bond CH42, CHLI1, CH-42, CHL11, CHLI-1, evm_27.TU.AmTr_v1.0_scaffold00092.149 0.8863464632787235 45 AMTR_s00070p00129320 Photosynthesis.photophosphorylation.linear electron flow.ferredoxin electron carrier evm_27.TU.AmTr_v1.0_scaffold00070.69 0.8855912413400401 45 AMTR_s00025p00237880 evm_27.TU.AmTr_v1.0_scaffold00025.357 0.8852473620146546 46 AMTR_s00040p00174940 Flagellar radial spoke protein 5 OS=Chlamydomonas reinhardtii evm_27.TU.AmTr_v1.0_scaffold00040.165 0.8850234832969457 86 AMTR_s00022p00232380 Photosynthesis.photophosphorylation.ATP synthase complex.peripheral CF1 subcomplex.subunit delta ATPD, evm_27.TU.AmTr_v1.0_scaffold00022.315 0.8849572080424798 68 AMTR_s00029p00239610 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb4-type component LHCB4.2, evm_27.TU.AmTr_v1.0_scaffold00029.405 0.8834562725984756 81 AMTR_s00088p00153020 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb1/2/3-type component LHCB2.3, LHCB2, LHCB2.4, evm_27.TU.AmTr_v1.0_scaffold00088.122 0.8827897665441693 55 AMTR_s00001p00142570 Photosynthesis.photophosphorylation.Cytb6/f to PS-I electron carriers.plastocyanin DRT112, PETE2, evm_27.TU.AmTr_v1.0_scaffold00001.122 0.8821964372498429 59 AMTR_s00004p00044800 Ferredoxin C 1, chloroplastic OS=Arabidopsis thaliana FdC2, evm_27.TU.AmTr_v1.0_scaffold00004.27 0.8799350733848175 53 AMTR_s00025p00246210 RNA processing.organelle machineries.ribonuclease activities.CSP41 endoribonuclease CSP41A, evm_27.TU.AmTr_v1.0_scaffold00025.394 0.8795219239788675 63 AMTR_s00004p00079400 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor NDF5 NDF5, evm_27.TU.AmTr_v1.0_scaffold00004.63 0.8793647364878615 85 AMTR_s00095p00128730 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.Mg-protoporphyrin IX monomethylester cyclase complex.CRD1 catalytic component ACSF, CHL27, CRD1, evm_27.TU.AmTr_v1.0_scaffold00095.88 0.8791097690793733 86 AMTR_s00029p00221060 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL4 component RPL4, evm_27.TU.AmTr_v1.0_scaffold00029.338 0.8775427082128612 83 AMTR_s00098p00154060 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.lumen subcomplex L.PnsL3/PQL2 component PQL1, PQL2, evm_27.TU.AmTr_v1.0_scaffold00098.43 0.8763714061957636 89 AMTR_s00010p00265990 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.lumen subcomplex L.PnsL2/PQL1 component PQL1, PQL2, evm_27.TU.AmTr_v1.0_scaffold00010.518 0.875150422147484 67 AMTR_s00060p00116070 Nutrient uptake.nitrogen assimilation.ammonium assimilation.glutamine synthetase ATGSR1, GLN1;1, ATGLN1;1, GSR 1, evm_27.TU.AmTr_v1.0_scaffold00060.55 0.8749708828529413 79 AMTR_s00109p00129480 Protein biosynthesis.organelle translation machineries.translation elongation.EF-Ts elongation factor emb2726, evm_27.TU.AmTr_v1.0_scaffold00109.135 0.8731370573442223 78 AMTR_s00061p00174500 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCS cytochrome f/c6 maturation system (system II).CcdA component CcdA, evm_27.TU.AmTr_v1.0_scaffold00061.187 0.8708918202799211 89 AMTR_s00009p00268360 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb6-type component CP24, LHCB6, evm_27.TU.AmTr_v1.0_scaffold00009.423 0.8708272011190327 68 AMTR_s00059p00183340 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.HCF164 thioredoxin-like factor HCF164, evm_27.TU.AmTr_v1.0_scaffold00059.198 0.8703050705976839 79 AMTR_s00032p00144550 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaF PSAF, evm_27.TU.AmTr_v1.0_scaffold00032.106 0.8701814561191721 70 AMTR_s00087p00141000 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaL PSAL, evm_27.TU.AmTr_v1.0_scaffold00087.44 0.8694271962125218 93 AMTR_s00209p00025500 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaN PSAN, evm_27.TU.AmTr_v1.0_scaffold00209.5 0.8692225661847378 72 AMTR_s00032p00227150 Enzyme classification.EC_1 oxidoreductases.EC_1.1 oxidoreductase acting on CH-OH group of donor evm_27.TU.AmTr_v1.0_scaffold00032.244 0.8680424128553449 74 AMTR_s00053p00151810 Enzyme classification.EC_6 ligases.EC_6.6 ligase forming nitrogen-metal bond V157, PDE166, ALB1, CHLD, ALB-1V, evm_27.TU.AmTr_v1.0_scaffold00053.99 0.8679494649024472 75 AMTR_s00065p00210500 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex B.PnsB1/NDF1 component NDH48, NDF1, evm_27.TU.AmTr_v1.0_scaffold00065.208 0.8676183421521586 77 AMTR_s00189p00032350 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb1/2/3-type component LHCB1.3, CAB140, AB140, CAB1, evm_27.TU.AmTr_v1.0_scaffold00189.5 0.8652580729673554 80 AMTR_s00099p00029990 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb33 protein evm_27.TU.AmTr_v1.0_scaffold00099.15 0.8649604090727584 81 AMTR_s00007p00193800 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaK PSAK, evm_27.TU.AmTr_v1.0_scaffold00007.164 0.864245697148312 82 AMTR_s00012p00254690 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase RLK, evm_27.TU.AmTr_v1.0_scaffold00012.280 0.8641238157474015 83 AMTR_s00025p00214840 Probable starch synthase 4, chloroplastic/amyloplastic OS=Arabidopsis thaliana ATSS4, SS4, SSIV, evm_27.TU.AmTr_v1.0_scaffold00025.290 0.8634461159177181 99 AMTR_s00037p00168570 Photosynthesis.photophosphorylation.ATP synthase complex.peripheral CF1 subcomplex.subunit gamma ATPC1, evm_27.TU.AmTr_v1.0_scaffold00037.79 0.8629775425060991 87 AMTR_s00021p00119000 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL34 component evm_27.TU.AmTr_v1.0_scaffold00021.66 0.8625606670851607 88 AMTR_s00032p00120910 RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor IDD4, AtIDD4, evm_27.TU.AmTr_v1.0_scaffold00032.84 0.8624657443424508 89 AMTR_s00101p00121540 PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00101.95 0.8616697461939447 95 AMTR_s00048p00192820 ENH1, evm_27.TU.AmTr_v1.0_scaffold00048.152 0.8614327730416614 92 AMTR_s00061p00065790 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaG PSAG, evm_27.TU.AmTr_v1.0_scaffold00061.40 0.8608605643881517 93 AMTR_s00107p00020160 Redox homeostasis.chloroplast redox homeostasis.NADPH-dependent thioredoxin reductase NTRC, evm_27.TU.AmTr_v1.0_scaffold00107.3 0.8590088697975785 95 AMTR_s00041p00199430 evm_27.TU.AmTr_v1.0_scaffold00041.178 0.858750583803388 96 AMTR_s00002p00271020 VAN3-binding protein OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.606 0.8581424327597755 97 AMTR_s00069p00125390 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor CRR1 crr1, evm_27.TU.AmTr_v1.0_scaffold00069.85 0.8573816310571454 98 AMTR_s00039p00131500 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaE PSAE-1, evm_27.TU.AmTr_v1.0_scaffold00039.86 0.8570605988702652 99 AMTR_s00067p00081240 Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana OTP84, evm_27.TU.AmTr_v1.0_scaffold00067.57 0.8570321751323343 100