Sequence Description Alias PCC hrr AMTR_s00047p00213160 RNA processing.organelle machineries.RNA splicing.mitochondrial RNA splicing.group-II intron splicing.nMAT1/2 type-I splicing factor evm_27.TU.AmTr_v1.0_scaffold00047.154 0.9695758809519875 1 AMTR_s00067p00129330 Probable ATP synthase 24 kDa subunit, mitochondrial OS=Arabidopsis thaliana emb1974, evm_27.TU.AmTr_v1.0_scaffold00067.111 0.9654046734775443 3 AMTR_s00078p00067180 Pentatricopeptide repeat-containing protein At2g46050, mitochondrial OS=Arabidopsis thaliana EMB2261, evm_27.TU.AmTr_v1.0_scaffold00078.40 0.9637152373165663 3 AMTR_s00066p00131520 Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.125 0.9613562460506664 4 AMTR_s00002p00261540 DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00002.453 0.9601235388753868 5 AMTR_s00148p00070910 Putative pentatricopeptide repeat-containing protein At1g13630 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00148.45 0.9567536469035789 10 AMTR_s00032p00190520 Protein degradation.ER-associated protein degradation (ERAD) machinery.PNG1 peptide:N-glycanase AtPNG1, PNG1, evm_27.TU.AmTr_v1.0_scaffold00032.172 0.9563970031435308 7 AMTR_s00039p00125380 Cell cycle.organelle machineries.DNA replication.genome stability maintenance.MSH1 factor CHM, MSH1, ATMSH1, CHM1, evm_27.TU.AmTr_v1.0_scaffold00039.79 0.9537233872261897 10 AMTR_s00044p00041520 evm_27.TU.AmTr_v1.0_scaffold00044.15 0.950517266846752 9 AMTR_s00022p00212920 DNA topoisomerase 6 subunit B OS=Oryza sativa subsp. indica TOP6B, BIN3, HYP6, RHL3, ATTOP6B, evm_27.TU.AmTr_v1.0_scaffold00022.251 0.949189332515294 18 AMTR_s00026p00063570 Chromatin organisation.histone modifications.histone acetylation.CBP/p300 histone acetyltransferase ATHPCAT2, HAC1, ATHAC1, PCAT2, evm_27.TU.AmTr_v1.0_scaffold00026.20 0.9489684199846904 11 AMTR_s00063p00176210 Solute transport.carrier-mediated transport.MOP superfamily.RFT lipid-linked oligosaccharide transporter evm_27.TU.AmTr_v1.0_scaffold00063.57 0.9482068607190096 12 AMTR_s00169p00027470 Cell cycle.interphase.DNA replication.telomere replication.telomere integrity maintenance complex.CTC1 component CTC1, ATCTC1, evm_27.TU.AmTr_v1.0_scaffold00169.14 0.9478455938142195 13 AMTR_s00001p00273020 External stimuli response.biotic stress.pathogen effector.NLR effector receptor evm_27.TU.AmTr_v1.0_scaffold00001.586 0.9453467161263067 32 AMTR_s00103p00089080 Protein degradation.peptidase families.metallopeptidase activities.M16 families.Nardilysin-like peptidase evm_27.TU.AmTr_v1.0_scaffold00103.49 0.9439605879332169 15 AMTR_s00146p00080830 RNA biosynthesis.transcriptional activation.PHD finger transcription factor evm_27.TU.AmTr_v1.0_scaffold00146.48 0.9435205624185303 25 AMTR_s00027p00231240 Amino acid metabolism.biosynthesis.shikimate family.phenylalanine and tyrosine.Tyr-sensitive arogenate dehydrogenase (ADH) evm_27.TU.AmTr_v1.0_scaffold00027.113 0.9426551356061729 17 AMTR_s00044p00037180 Cell cycle.organelle machineries.organelle fission.plastid division.ARC3 FtsZ assembly factor ARC3, evm_27.TU.AmTr_v1.0_scaffold00044.12 0.9421751348364148 18 AMTR_s00083p00130670 Protein modification.phosphorylation.STE kinase superfamily.MAPKK kinase MKK3, ATMKK3, evm_27.TU.AmTr_v1.0_scaffold00083.35 0.9417096344232556 33 AMTR_s00023p00193470 Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00023.133 0.9401529934063749 20 AMTR_s00110p00099550 Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00110.61 0.9393155004639682 21 AMTR_s00025p00159760 RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.PHD transcription factor PRHA, evm_27.TU.AmTr_v1.0_scaffold00025.181 0.9391315242055568 22 AMTR_s00061p00106080 evm_27.TU.AmTr_v1.0_scaffold00061.82 0.9387857056614832 31 AMTR_s00148p00059020 evm_27.TU.AmTr_v1.0_scaffold00148.33 0.9383265776255887 24 AMTR_s00025p00131930 evm_27.TU.AmTr_v1.0_scaffold00025.131 0.9378613742200907 25 AMTR_s00019p00242350 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIc transcription factor complex.TFC1/Tau95 component evm_27.TU.AmTr_v1.0_scaffold00019.357 0.9370495337692669 26 AMTR_s00066p00157030 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor evm_27.TU.AmTr_v1.0_scaffold00066.162 0.9356559294075253 27 AMTR_s00046p00080660 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-type E3 ligase BRIZ2, evm_27.TU.AmTr_v1.0_scaffold00046.35 0.9343788185882296 28 AMTR_s00002p00268800 evm_27.TU.AmTr_v1.0_scaffold00002.541 0.9334280535069689 29 AMTR_s00009p00265260 evm_27.TU.AmTr_v1.0_scaffold00009.380 0.9332834048770157 30 AMTR_s00003p00270010 Cellular respiration.oxidative phosphorylation.alternative NAD(P)H dehydrogenase activities.type-II NAD(P)H dehydrogenase activities.NDB-type NAD(P)H dehydrogenase NDB3, evm_27.TU.AmTr_v1.0_scaffold00003.424 0.9327487344446127 31 AMTR_s00085p00149180 Cell cycle.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.DNA helicase (RCK/MER3) RCK, MER3, evm_27.TU.AmTr_v1.0_scaffold00085.93 0.9324721059931741 52 AMTR_s00165p00033420 TPR repeat-containing thioredoxin TTL1 OS=Arabidopsis thaliana TTL1, evm_27.TU.AmTr_v1.0_scaffold00165.18 0.9317437584041974 33 AMTR_s00059p00194330 evm_27.TU.AmTr_v1.0_scaffold00059.216 0.9299146776365623 82 AMTR_s00197p00038370 evm_27.TU.AmTr_v1.0_scaffold00197.18 0.9296878019200993 59 AMTR_s00029p00164810 evm_27.TU.AmTr_v1.0_scaffold00029.213 0.9295332515700901 40 AMTR_s00048p00228530 Protein modification.phosphorylation.TKL kinase superfamily.LRR-XIII kinase families.LRR-XIIIa kinase FEI1, evm_27.TU.AmTr_v1.0_scaffold00048.222 0.9288387780540314 40 AMTR_s00048p00165310 Protein BCCIP homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00048.119 0.9287640440088073 38 AMTR_s00095p00091200 Calmodulin-interacting protein 111 OS=Arabidopsis thaliana CIP111, evm_27.TU.AmTr_v1.0_scaffold00095.52 0.9286223628947669 49 AMTR_s04272p00004560 SDG18, SUVR2, evm_27.TU.AmTr_v1.0_scaffold04272.1 0.9284634426287421 40 AMTR_s00008p00203230 Protein argonaute 16 OS=Oryza sativa subsp. japonica AGO6, evm_27.TU.AmTr_v1.0_scaffold00008.123 0.9284497510665045 41 AMTR_s00012p00226630 Chromatin organisation.DNA methylation.canonical RNA-directed DNA methylation pathway.IDN/IDP regulatory protein RDM12, IDN2, evm_27.TU.AmTr_v1.0_scaffold00012.177 0.928260594498186 42 AMTR_s00026p00051870 RNA biosynthesis.siRNA biogenesis.DRB4-DRB7.1 regulator complex.DRB7 component DCL4, ATDCL4, evm_27.TU.AmTr_v1.0_scaffold00026.17 0.9281443757169083 43 AMTR_s00012p00229720 Factor of DNA methylation 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00012.183 0.9278511612892556 44 AMTR_s00045p00163960 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.nuclear import and assembly regulation.RPAP3 polymerase- II regulator protein TPR5, evm_27.TU.AmTr_v1.0_scaffold00045.188 0.9277335206632172 58 AMTR_s00021p00171430 evm_27.TU.AmTr_v1.0_scaffold00021.124 0.9276806829544955 46 AMTR_s00008p00266190 evm_27.TU.AmTr_v1.0_scaffold00008.227 0.9276419789403039 47 AMTR_s00029p00235180 Enzyme classification.EC_2 transferases.EC_2.7 transferase transferring phosphorus-containing group evm_27.TU.AmTr_v1.0_scaffold00029.380 0.927478379874935 48 AMTR_s00040p00222820 Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00040.257 0.9266533713409634 49 AMTR_s00109p00079620 RNA processing.ribonuclease activities.RNase P ribonuclease activities.protein-only RNase P PRORP1, evm_27.TU.AmTr_v1.0_scaffold00109.62 0.9263441120241691 50 AMTR_s00041p00059380 evm_27.TU.AmTr_v1.0_scaffold00041.32 0.9259409418049132 82 AMTR_s00058p00120430 evm_27.TU.AmTr_v1.0_scaffold00058.82 0.925743366488987 73 AMTR_s00040p00198390 Calmodulin-interacting protein 111 OS=Arabidopsis thaliana CIP111, evm_27.TU.AmTr_v1.0_scaffold00040.199 0.9254838718604489 53 AMTR_s00008p00203110 Protein argonaute 4A OS=Oryza sativa subsp. japonica AGO4, OCP11, evm_27.TU.AmTr_v1.0_scaffold00008.122 0.9253318796021113 54 AMTR_s00025p00178950 evm_27.TU.AmTr_v1.0_scaffold00025.215 0.9252841131107118 55 AMTR_s00030p00217190 evm_27.TU.AmTr_v1.0_scaffold00030.164 0.924865500882044 56 AMTR_s00090p00083520 RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Prp22 RNA helicase evm_27.TU.AmTr_v1.0_scaffold00090.29 0.9246468820423557 90 AMTR_s00049p00181700 Vesicle trafficking.target membrane tethering.Exocyst complex.SEC6 component SEC6, evm_27.TU.AmTr_v1.0_scaffold00049.176 0.9244380900601447 59 AMTR_s00002p00259560 Nucleotide metabolism.purines.salvage pathway.AMP deaminase activities.membrane-associated AMP deaminase FAC1, ATAMPD, evm_27.TU.AmTr_v1.0_scaffold00002.437 0.9242349502817313 60 AMTR_s00052p00146690 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.SCC1 mitotic-specific Kleisin-type component ATRAD21.3, SYN4, evm_27.TU.AmTr_v1.0_scaffold00052.52 0.9232611267154553 61 AMTR_s00067p00206040 evm_27.TU.AmTr_v1.0_scaffold00067.228 0.9227614854631315 62 AMTR_s00061p00215990 Cell cycle.mitosis and meiosis.chromosome segregation.centromere assembly and maintenance.WYRD inner centromere protein evm_27.TU.AmTr_v1.0_scaffold00061.279 0.922290874827426 63 AMTR_s00055p00187070 Protein ENHANCED DOWNY MILDEW 2 OS=Arabidopsis thaliana EDM2, evm_27.TU.AmTr_v1.0_scaffold00055.116 0.9219397012607999 83 AMTR_s00010p00223040 COP1-interactive protein 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00010.243 0.9218648394264835 65 AMTR_s00042p00136580 AtDNMT2, DNMT2, evm_27.TU.AmTr_v1.0_scaffold00042.33 0.921814226592399 66 AMTR_s00058p00127730 evm_27.TU.AmTr_v1.0_scaffold00058.92 0.9217806191582817 67 AMTR_s00049p00176850 External stimuli response.biotic stress.pathogen-associated molecular pattern (PAMP).PTI (pattern-triggered immunity) network.bacterial elicitor response.RGS1 G-protein immune signalling regulator RGS1, ATRGS1, evm_27.TU.AmTr_v1.0_scaffold00049.169 0.9215934065028648 68 AMTR_s00053p00133100 Cell cycle.mitosis and meiosis.meiotic recombination.meiotic crossover.class II interference-insensitive crossover pathway.MUS81-dependent pathway.MUS81-EME1 Holliday junction cleavage heterodimer.MUS81 component MUS81, ATMUS81, evm_27.TU.AmTr_v1.0_scaffold00053.83 0.921371662223242 69 AMTR_s00007p00224640 GTP-binding protein At2g22870 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00007.219 0.9212680119190235 75 AMTR_s00038p00178460 Cell cycle.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.transverse filament protein of synaptonemal complex (ZYP1/ZIP1) ZYP1a, ZYP1, evm_27.TU.AmTr_v1.0_scaffold00038.120 0.9203571571973279 71 AMTR_s00149p00069080 DAR GTPase 2, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00149.47 0.9201986910725632 72 AMTR_s00131p00068700 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol V catalytic subunits.subunit 1 DRD3, ATNRPD1B, NRPD1B, NRPE1, DMS5 0.919066297465044 74 AMTR_s00037p00234680 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Rad5/16-like group.Rad5-like chromatin remodeling factor evm_27.TU.AmTr_v1.0_scaffold00037.154 0.9185472030436732 75 AMTR_s00022p00054670 Cytoskeleton.microtubular network.Kinesin microtubule-based motor protein activities.Kinesin-14 motor protein KCBP, ZWI, PKCBP 0.9181143666642081 77 AMTR_s00059p00170320 Solute transport.carrier-mediated transport.MOP superfamily.MATE family.metabolite transporter (DTX-type) evm_27.TU.AmTr_v1.0_scaffold00059.165 0.9180862419240979 78 AMTR_s00002p00270610 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPM/PP2C Mn/Mg-dependent phosphatase families.clade J phosphatase evm_27.TU.AmTr_v1.0_scaffold00002.591 0.9179488034033795 88 AMTR_s00045p00091940 Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00045.85 0.9178146657897588 80 AMTR_s00004p00118340 evm_27.TU.AmTr_v1.0_scaffold00004.101 0.9176942398546521 81 AMTR_s00003p00269660 evm_27.TU.AmTr_v1.0_scaffold00003.413 0.917112583575778 82 AMTR_s00021p00237290 Uncharacterized protein At4g10930 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00021.243 0.9170459700004366 83 AMTR_s00019p00203030 Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.238 0.9167025618788383 84 AMTR_s00010p00267530 Nutrient uptake.phosphorus assimilation.phosphate uptake.PHO1 phosphate transporter evm_27.TU.AmTr_v1.0_scaffold00010.539 0.9163021556426598 87 AMTR_s00044p00153760 Putative pentatricopeptide repeat-containing protein At5g43820 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00044.161 0.9162452591993402 90 AMTR_s00003p00270420 0.9162374388366247 91 AMTR_s00057p00139000 Amino acid metabolism.biosynthesis.shikimate family.shikimate pathway.3-dehydroquinate dehydratase and shikimate dehydrogenase MEE32, EMB3004, evm_27.TU.AmTr_v1.0_scaffold00057.123 0.91563722521871 92 AMTR_s00032p00034370 Cell cycle.organelle machineries.DNA replication.DNA primase and helicase TWINKLE evm_27.TU.AmTr_v1.0_scaffold00032.15 0.9154800064133388 93 AMTR_s00058p00031570 Probable mannose-1-phosphate guanylyltransferase 2 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00058.7 0.9154347932277854 94 AMTR_s00088p00128580 DNA damage response.DNA repair mechanisms.base excision repair (BER).bifunctional DNA glycosylase/lyase (ROS1) DML1, ROS1, evm_27.TU.AmTr_v1.0_scaffold00088.93 0.9153693776239966 95 AMTR_s00171p00062850 evm_27.TU.AmTr_v1.0_scaffold00171.47 0.9151548735874097 97 AMTR_s00185p00017870 Protein MAIN-LIKE 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00185.2 0.9146607712174133 98 AMTR_s00057p00019730 Cytoskeleton.microtubular network.microtubule Tubulin heterodimer formation.gamma-Tubulin ring complex (gamma-TuRC).GCP5 component emb1427, evm_27.TU.AmTr_v1.0_scaffold00057.4 0.9145521747493873 99