Sequence Description Alias PCC hrr AMTR_s00045p00062170 RNA processing.RNA modification.rRNA/tRNA methylation.TRM13 tRNA adenosine-methyltransferase evm_27.TU.AmTr_v1.0_scaffold00045.45 0.9637152373165663 3 AMTR_s00066p00131520 Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.125 0.9625602841255745 3 AMTR_s00169p00027470 Cell cycle.interphase.DNA replication.telomere replication.telomere integrity maintenance complex.CTC1 component CTC1, ATCTC1, evm_27.TU.AmTr_v1.0_scaffold00169.14 0.9572558333382797 3 AMTR_s00039p00125380 Cell cycle.organelle machineries.DNA replication.genome stability maintenance.MSH1 factor CHM, MSH1, ATMSH1, CHM1, evm_27.TU.AmTr_v1.0_scaffold00039.79 0.9549488874285422 9 AMTR_s00148p00070910 Putative pentatricopeptide repeat-containing protein At1g13630 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00148.45 0.9495142786877097 18 AMTR_s00002p00261540 DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00002.453 0.9488326199394448 16 AMTR_s00047p00213160 RNA processing.organelle machineries.RNA splicing.mitochondrial RNA splicing.group-II intron splicing.nMAT1/2 type-I splicing factor evm_27.TU.AmTr_v1.0_scaffold00047.154 0.947817813063771 14 AMTR_s00045p00163960 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.nuclear import and assembly regulation.RPAP3 polymerase- II regulator protein TPR5, evm_27.TU.AmTr_v1.0_scaffold00045.188 0.9472612023186645 11 AMTR_s00001p00273020 External stimuli response.biotic stress.pathogen effector.NLR effector receptor evm_27.TU.AmTr_v1.0_scaffold00001.586 0.9453553460131038 31 AMTR_s00023p00193470 Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00023.133 0.944650134744633 10 AMTR_s00002p00268800 evm_27.TU.AmTr_v1.0_scaffold00002.541 0.9437146396042662 11 AMTR_s00032p00190520 Protein degradation.ER-associated protein degradation (ERAD) machinery.PNG1 peptide:N-glycanase AtPNG1, PNG1, evm_27.TU.AmTr_v1.0_scaffold00032.172 0.9422324684217767 12 AMTR_s00110p00099550 Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00110.61 0.940153919343596 13 AMTR_s00012p00229720 Factor of DNA methylation 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00012.183 0.9394498053570959 14 AMTR_s00022p00212920 DNA topoisomerase 6 subunit B OS=Oryza sativa subsp. indica TOP6B, BIN3, HYP6, RHL3, ATTOP6B, evm_27.TU.AmTr_v1.0_scaffold00022.251 0.9390750450344335 45 AMTR_s00040p00222820 Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00040.257 0.939012862747543 16 AMTR_s00007p00224640 GTP-binding protein At2g22870 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00007.219 0.9386310928904429 17 AMTR_s00148p00059020 evm_27.TU.AmTr_v1.0_scaffold00148.33 0.9358798430320643 18 AMTR_s00025p00217750 Chloroplast envelope membrane protein OS=Chlorokybus atmophyticus evm_27.TU.AmTr_v1.0_scaffold00025.298 0.9352776604915346 19 AMTR_s00025p00131930 evm_27.TU.AmTr_v1.0_scaffold00025.131 0.9333360740384984 22 AMTR_s00197p00038370 evm_27.TU.AmTr_v1.0_scaffold00197.18 0.9322742161126184 49 AMTR_s00026p00063570 Chromatin organisation.histone modifications.histone acetylation.CBP/p300 histone acetyltransferase ATHPCAT2, HAC1, ATHAC1, PCAT2, evm_27.TU.AmTr_v1.0_scaffold00026.20 0.9321236584481374 22 AMTR_s00083p00130670 Protein modification.phosphorylation.STE kinase superfamily.MAPKK kinase MKK3, ATMKK3, evm_27.TU.AmTr_v1.0_scaffold00083.35 0.9305541004106948 73 AMTR_s00026p00051870 RNA biosynthesis.siRNA biogenesis.DRB4-DRB7.1 regulator complex.DRB7 component DCL4, ATDCL4, evm_27.TU.AmTr_v1.0_scaffold00026.17 0.9304027572010666 24 AMTR_s00044p00041520 evm_27.TU.AmTr_v1.0_scaffold00044.15 0.9290976857123233 57 AMTR_s00059p00194330 evm_27.TU.AmTr_v1.0_scaffold00059.216 0.9288524031293444 87 AMTR_s00002p00268330 Enzyme classification.EC_3 hydrolases.EC_3.4 hydrolase acting on peptide bond (peptidase) evm_27.TU.AmTr_v1.0_scaffold00002.535 0.9287450844041893 74 AMTR_s00024p00249000 Cell cycle.organelle machineries.DNA replication.genome stability maintenance.RecG-type DNA translocase evm_27.TU.AmTr_v1.0_scaffold00024.324 0.9286326467485654 28 AMTR_s00010p00267530 Nutrient uptake.phosphorus assimilation.phosphate uptake.PHO1 phosphate transporter evm_27.TU.AmTr_v1.0_scaffold00010.539 0.9285315550639677 29 AMTR_s04272p00004560 SDG18, SUVR2, evm_27.TU.AmTr_v1.0_scaffold04272.1 0.9282999843396578 30 AMTR_s00067p00129330 Probable ATP synthase 24 kDa subunit, mitochondrial OS=Arabidopsis thaliana emb1974, evm_27.TU.AmTr_v1.0_scaffold00067.111 0.9281464858585323 45 AMTR_s00053p00133100 Cell cycle.mitosis and meiosis.meiotic recombination.meiotic crossover.class II interference-insensitive crossover pathway.MUS81-dependent pathway.MUS81-EME1 Holliday junction cleavage heterodimer.MUS81 component MUS81, ATMUS81, evm_27.TU.AmTr_v1.0_scaffold00053.83 0.9279538926869689 32 AMTR_s00025p00178950 evm_27.TU.AmTr_v1.0_scaffold00025.215 0.9268286116370347 33 AMTR_s00059p00131310 Methyltransferase-like protein 2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00059.108 0.9266579444347017 96 AMTR_s00025p00159760 RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.PHD transcription factor PRHA, evm_27.TU.AmTr_v1.0_scaffold00025.181 0.9261740478411937 35 AMTR_s00095p00091200 Calmodulin-interacting protein 111 OS=Arabidopsis thaliana CIP111, evm_27.TU.AmTr_v1.0_scaffold00095.52 0.9249188097880429 59 AMTR_s00067p00206040 evm_27.TU.AmTr_v1.0_scaffold00067.228 0.9248983133721448 37 AMTR_s00149p00069080 DAR GTPase 2, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00149.47 0.9240421042785054 38 AMTR_s00052p00146690 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.SCC1 mitotic-specific Kleisin-type component ATRAD21.3, SYN4, evm_27.TU.AmTr_v1.0_scaffold00052.52 0.9238920621948575 39 AMTR_s00049p00181700 Vesicle trafficking.target membrane tethering.Exocyst complex.SEC6 component SEC6, evm_27.TU.AmTr_v1.0_scaffold00049.176 0.9238626572204508 40 AMTR_s00009p00251110 Protein degradation.peptidase families.serine-type peptidase activities.subtilisin-type protease families.SBT6.2 protease TPP2, evm_27.TU.AmTr_v1.0_scaffold00009.258 0.923618233040531 96 AMTR_s00009p00265260 evm_27.TU.AmTr_v1.0_scaffold00009.380 0.9235816425656144 43 AMTR_s00030p00234170 evm_27.TU.AmTr_v1.0_scaffold00030.193 0.9225341262930646 44 AMTR_s00055p00041510 Histidine kinase 1 OS=Arabidopsis thaliana AHK1, HK1, ATHK1, evm_27.TU.AmTr_v1.0_scaffold00055.12 0.9224848076032378 89 AMTR_s00112p00086310 evm_27.TU.AmTr_v1.0_scaffold00112.21 0.9222664616744715 46 AMTR_s00038p00178460 Cell cycle.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.transverse filament protein of synaptonemal complex (ZYP1/ZIP1) ZYP1a, ZYP1, evm_27.TU.AmTr_v1.0_scaffold00038.120 0.9219687164562126 47 AMTR_s00042p00136580 AtDNMT2, DNMT2, evm_27.TU.AmTr_v1.0_scaffold00042.33 0.9216070016814505 48 AMTR_s00066p00157030 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor evm_27.TU.AmTr_v1.0_scaffold00066.162 0.9199191933987777 50 AMTR_s00200p00040190 evm_27.TU.AmTr_v1.0_scaffold00200.16 0.9198140310186648 51 AMTR_s00030p00197350 RuvB-like protein 1 OS=Arabidopsis thaliana ATTIP49A, RIN1, evm_27.TU.AmTr_v1.0_scaffold00030.129 0.9184560017999541 52 AMTR_s00027p00231240 Amino acid metabolism.biosynthesis.shikimate family.phenylalanine and tyrosine.Tyr-sensitive arogenate dehydrogenase (ADH) evm_27.TU.AmTr_v1.0_scaffold00027.113 0.917164231631384 54 AMTR_s00049p00016550 evm_27.TU.AmTr_v1.0_scaffold00049.6 0.91690946557593 55 AMTR_s00019p00242350 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIc transcription factor complex.TFC1/Tau95 component evm_27.TU.AmTr_v1.0_scaffold00019.357 0.9163114821447484 57 AMTR_s00039p00144340 evm_27.TU.AmTr_v1.0_scaffold00039.98 0.915681802478901 92 AMTR_s00003p00270010 Cellular respiration.oxidative phosphorylation.alternative NAD(P)H dehydrogenase activities.type-II NAD(P)H dehydrogenase activities.NDB-type NAD(P)H dehydrogenase NDB3, evm_27.TU.AmTr_v1.0_scaffold00003.424 0.9155359614121393 59 AMTR_s00057p00139000 Amino acid metabolism.biosynthesis.shikimate family.shikimate pathway.3-dehydroquinate dehydratase and shikimate dehydrogenase MEE32, EMB3004, evm_27.TU.AmTr_v1.0_scaffold00057.123 0.915333525728031 69 AMTR_s00054p00159220 Cytoskeleton.microtubular network.Kinesin microtubule-based motor protein activities.Kinesin-7 motor protein evm_27.TU.AmTr_v1.0_scaffold00054.57 0.9151650003337521 63 AMTR_s00046p00080660 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-type E3 ligase BRIZ2, evm_27.TU.AmTr_v1.0_scaffold00046.35 0.9149738661474157 63 AMTR_s00022p00054670 Cytoskeleton.microtubular network.Kinesin microtubule-based motor protein activities.Kinesin-14 motor protein KCBP, ZWI, PKCBP 0.9147820407905349 63 AMTR_s00040p00222860 Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00040.258 0.9147325550720206 64 AMTR_s00045p00091940 Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00045.85 0.9145146033625845 65 AMTR_s00030p00222710 Protein TRANSPARENT TESTA 9 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00030.171 0.9142128306314863 66 AMTR_s00049p00176850 External stimuli response.biotic stress.pathogen-associated molecular pattern (PAMP).PTI (pattern-triggered immunity) network.bacterial elicitor response.RGS1 G-protein immune signalling regulator RGS1, ATRGS1, evm_27.TU.AmTr_v1.0_scaffold00049.169 0.9137320535318345 68 AMTR_s00165p00033420 TPR repeat-containing thioredoxin TTL1 OS=Arabidopsis thaliana TTL1, evm_27.TU.AmTr_v1.0_scaffold00165.18 0.9134263615923752 78 AMTR_s00048p00228530 Protein modification.phosphorylation.TKL kinase superfamily.LRR-XIII kinase families.LRR-XIIIa kinase FEI1, evm_27.TU.AmTr_v1.0_scaffold00048.222 0.9132889582513066 79 AMTR_s00045p00231470 Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus evm_27.TU.AmTr_v1.0_scaffold00045.337 0.9130724936518623 71 AMTR_s00057p00157250 Cytoskeleton.microtubular network.Kinesin microtubule-based motor protein activities.Kinesin-14 motor protein evm_27.TU.AmTr_v1.0_scaffold00057.145 0.9129432058492265 72 AMTR_s00025p00142780 Pentatricopeptide repeat-containing protein CRP1, chloroplastic OS=Zea mays evm_27.TU.AmTr_v1.0_scaffold00025.155 0.9128265933706116 73 AMTR_s00047p00206550 evm_27.TU.AmTr_v1.0_scaffold00047.141 0.9121813357039812 75 AMTR_s00008p00266190 evm_27.TU.AmTr_v1.0_scaffold00008.227 0.9117409089466489 76 AMTR_s00032p00034370 Cell cycle.organelle machineries.DNA replication.DNA primase and helicase TWINKLE evm_27.TU.AmTr_v1.0_scaffold00032.15 0.9116443202459574 77 AMTR_s00048p00165310 Protein BCCIP homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00048.119 0.9111376603241468 97 AMTR_s00099p00073140 Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00099.53 0.910983065107673 81 AMTR_s00002p00259560 Nucleotide metabolism.purines.salvage pathway.AMP deaminase activities.membrane-associated AMP deaminase FAC1, ATAMPD, evm_27.TU.AmTr_v1.0_scaffold00002.437 0.9109371884271038 82 AMTR_s00044p00037180 Cell cycle.organelle machineries.organelle fission.plastid division.ARC3 FtsZ assembly factor ARC3, evm_27.TU.AmTr_v1.0_scaffold00044.12 0.910509446167649 83 AMTR_s00003p00269660 evm_27.TU.AmTr_v1.0_scaffold00003.413 0.9103232930835982 84 AMTR_s00171p00062850 evm_27.TU.AmTr_v1.0_scaffold00171.47 0.9100505241507851 85 AMTR_s00058p00127730 evm_27.TU.AmTr_v1.0_scaffold00058.92 0.9099586198500718 86 AMTR_s00109p00079620 RNA processing.ribonuclease activities.RNase P ribonuclease activities.protein-only RNase P PRORP1, evm_27.TU.AmTr_v1.0_scaffold00109.62 0.9096811224934851 88 AMTR_s00044p00141100 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.NOC4 assembly factor EMB2762, evm_27.TU.AmTr_v1.0_scaffold00044.137 0.9093995401905639 89 AMTR_s00061p00026580 Cell cycle.interphase.DNA replication.preinitiation.TOP1 DNA topoisomerase MGO1, TOP1, TOP1ALPHA, evm_27.TU.AmTr_v1.0_scaffold00061.1 0.9081898490922449 95 AMTR_s00012p00228300 Factor of DNA methylation 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00012.179 0.9077994966266832 97 AMTR_s00056p00069820 Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00056.47 0.9075889441340266 98 AMTR_s00019p00231050 Uncharacterized protein At2g39910 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.315 0.9072883301320029 100