Sequence Description Alias PCC hrr AMTR_s00031p00115090 evm_27.TU.AmTr_v1.0_scaffold00031.51 0.9442132512631575 2 AMTR_s00050p00111180 Carbohydrate metabolism.starch metabolism.degradation.dephosphorylation.SEX4-type phosphoglucan phosphatase ATSEX4, ATPTPKIS1, DSP4, SEX4, evm_27.TU.AmTr_v1.0_scaffold00050.23 0.9293985608804965 2 AMTR_s00058p00188880 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease DEGP1, Deg1, evm_27.TU.AmTr_v1.0_scaffold00058.187 0.9200548227902932 3 AMTR_s00029p00159160 Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.190 0.9191369889957832 4 AMTR_s00033p00183310 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC17 component PTAC17, evm_27.TU.AmTr_v1.0_scaffold00033.135 0.9095150459312557 5 AMTR_s00059p00159100 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.4-hydroxy-3-methylbut-2-enyl diphosphate reductase CLB6, ISPH, HDR, evm_27.TU.AmTr_v1.0_scaffold00059.146 0.9077044709135925 23 AMTR_s00066p00198600 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.VIPP protein PTAC4, VIPP1, evm_27.TU.AmTr_v1.0_scaffold00066.264 0.9075476199146343 37 AMTR_s00103p00115980 Protein TAB2 homolog, chloroplastic OS=Arabidopsis thaliana ATAB2, evm_27.TU.AmTr_v1.0_scaffold00103.69 0.9020002248121622 25 AMTR_s00117p00114400 Probable acyl-activating enzyme 16, chloroplastic OS=Arabidopsis thaliana AAE15, evm_27.TU.AmTr_v1.0_scaffold00117.48 0.9016534661864308 26 AMTR_s00007p00141970 Bifunctional monothiol glutaredoxin-S16, chloroplastic OS=Arabidopsis thaliana CXIP2, ATGRX2, evm_27.TU.AmTr_v1.0_scaffold00007.93 0.9014985126748544 10 AMTR_s00078p00161460 DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica RH39, evm_27.TU.AmTr_v1.0_scaffold00078.147 0.9009351689761781 38 AMTR_s00002p00233660 GTP-binding protein At3g49725, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.269 0.8992074312779273 25 AMTR_s00029p00233910 Protein modification.peptide maturation.plastid.EGY protease ATEGY2, EGY2, evm_27.TU.AmTr_v1.0_scaffold00029.376 0.8948552565949587 53 AMTR_s00036p00064050 Protein translocation.chloroplast.inner envelope TIC translocation system.TIC-20 complex.Tic56 component evm_27.TU.AmTr_v1.0_scaffold00036.20 0.8937949662273389 14 AMTR_s00101p00064110 Lipid metabolism.galactolipid and sulfolipid synthesis.UDP-sulfoquinovose synthase SQD1, evm_27.TU.AmTr_v1.0_scaffold00101.37 0.893737054333519 50 AMTR_s00115p00062270 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.Y3IP1 protein AtCEST, CEST, evm_27.TU.AmTr_v1.0_scaffold00115.3 0.8930307087155245 16 AMTR_s00002p00210720 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL19 component evm_27.TU.AmTr_v1.0_scaffold00002.217 0.8916489491267116 69 AMTR_s00163p00031970 evm_27.TU.AmTr_v1.0_scaffold00163.9 0.8906256286795029 36 AMTR_s00024p00078360 65-kDa microtubule-associated protein 6 OS=Arabidopsis thaliana ATMAP65-6, MAP65-6, evm_27.TU.AmTr_v1.0_scaffold00024.38 0.8892410094380575 19 AMTR_s00041p00056550 Protein degradation.peptidase families.serine-type peptidase activities.mitochondrion Clp-type protease complex.ClpP2 proteolytic component CLP2, CLPR2, NCLPP2, evm_27.TU.AmTr_v1.0_scaffold00041.27 0.8885338654139059 20 AMTR_s00132p00112670 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll breakdown.red chlorophyll catabolite reductase (RCCR) ATRCCR, ACD2, evm_27.TU.AmTr_v1.0_scaffold00132.27 0.8880892097463982 30 AMTR_s00024p00113120 evm_27.TU.AmTr_v1.0_scaffold00024.63 0.8872235176215513 22 AMTR_s00160p00077470 evm_27.TU.AmTr_v1.0_scaffold00160.29 0.885964101109214 25 AMTR_s00001p00048980 Carbohydrate metabolism.starch metabolism.synthesis.starch branching enzyme SBE2.2, evm_27.TU.AmTr_v1.0_scaffold00001.28 0.8851858844271505 24 AMTR_s00002p00194810 Protein degradation.peptidase families.serine-type peptidase activities.chloroplast Clp-type protease complex.ClpR non-proteolytic core component CLPR4, evm_27.TU.AmTr_v1.0_scaffold00002.176 0.8813754361038536 90 AMTR_s00029p00107920 evm_27.TU.AmTr_v1.0_scaffold00029.111 0.8812749618058621 26 AMTR_s00112p00137130 Solute transport.carrier-mediated transport.MFS superfamily.SP family.hexose transporter (SGB/GlcT-type) evm_27.TU.AmTr_v1.0_scaffold00112.35 0.8808497893451327 31 AMTR_s00032p00226710 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.coproporphyrinogen III oxidase activities.HemF oxygen-dependent coproporphyrinogen III oxidase ATCPO-I, LIN2, HEMF1, evm_27.TU.AmTr_v1.0_scaffold00032.243 0.8789381195306577 39 AMTR_s00077p00156540 Serotonin N-acetyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica ATNSI, NSI, evm_27.TU.AmTr_v1.0_scaffold00077.160 0.8778248044983433 48 AMTR_s00005p00168970 Carbohydrate metabolism.starch metabolism.degradation.phosphorylation.PWD phosphoglucan, water dikinase ATGWD3, OK1, PWD, evm_27.TU.AmTr_v1.0_scaffold00005.53 0.8769643748881841 32 AMTR_s00012p00241210 Uncharacterized protein At5g02240 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00012.216 0.8760417592882502 32 AMTR_s00040p00111170 Protein ORANGE-GREEN, chloroplastic OS=Cucumis melo evm_27.TU.AmTr_v1.0_scaffold00040.80 0.872669873035319 35 AMTR_s00078p00158650 evm_27.TU.AmTr_v1.0_scaffold00078.142 0.8726533808859471 36 AMTR_s00011p00085990 Solute transport.channels.VIC superfamily.voltage-gated potassium cation channel (TPK/KCO-type) ATTPK5, ATKCO5, KCO5, TPK5, evm_27.TU.AmTr_v1.0_scaffold00011.20 0.872223420146493 37 AMTR_s00025p00237880 evm_27.TU.AmTr_v1.0_scaffold00025.357 0.8709294910098293 81 AMTR_s00061p00061380 Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00061.36 0.8691588994091723 40 AMTR_s00022p00127970 evm_27.TU.AmTr_v1.0_scaffold00022.120 0.8668924359810474 43 AMTR_s00195p00035880 evm_27.TU.AmTr_v1.0_scaffold00195.1 0.8660606641410454 44 AMTR_s00048p00085290 Plastid lipid-associated protein 3, chloroplastic OS=Brassica campestris evm_27.TU.AmTr_v1.0_scaffold00048.41 0.865841968378426 45 AMTR_s00126p00013900 Protein modification.peptide maturation.mitochondrion.PreP organellar peptidasome ATPREP1, PREP1, ATZNMP, evm_27.TU.AmTr_v1.0_scaffold00126.1 0.8653282933116626 74 AMTR_s00164p00068000 Protein degradation.peptidase families.serine-type peptidase activities.chloroplast Clp-type protease complex.ClpR non-proteolytic core component CLPR1, SVR2, NCLPP5, evm_27.TU.AmTr_v1.0_scaffold00164.30 0.8638241990335246 51 AMTR_s00006p00259220 Coenzyme metabolism.tetrapyrrol biosynthesis.uroporphyrinogen III formation.porphobilinogen synthase HEMB1, evm_27.TU.AmTr_v1.0_scaffold00006.214 0.8629235329007592 62 AMTR_s00017p00235750 Coenzyme metabolism.tetrahydrofolate synthesis.tetrahydrofolate (THF) interconversions.5,10-methenyl-THF synthetase evm_27.TU.AmTr_v1.0_scaffold00017.195 0.8623182646330099 56 AMTR_s00071p00171040 Nucleotide metabolism.purines.phosphotransfers.adenylate kinase AMK2, evm_27.TU.AmTr_v1.0_scaffold00071.171 0.8599650164029621 58 AMTR_s00077p00122240 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00077.115 0.8592047143596551 59 AMTR_s00048p00123660 Probable inactive shikimate kinase like 2, chloroplastic OS=Arabidopsis thaliana SKL2, evm_27.TU.AmTr_v1.0_scaffold00048.67 0.8579511634436919 61 AMTR_s00004p00145530 Cellular respiration.glycolysis.methylglyoxal degradation.D-lactate dehydrogenase evm_27.TU.AmTr_v1.0_scaffold00004.143 0.8572631929238698 62 AMTR_s00048p00138430 Solute transport.carrier-mediated transport.PLGG1 glycerate:glycolate transporter evm_27.TU.AmTr_v1.0_scaffold00048.86 0.8562100064251089 65 AMTR_s00031p00027380 Cell cycle.organelle machineries.organelle fission.plastid division.FtsZ prokaryotic-tubulin filaments.FtsZ2 component FTSZ2-2, evm_27.TU.AmTr_v1.0_scaffold00031.4 0.8545255207388531 68 AMTR_s00074p00121610 Photosynthesis.photophosphorylation.chlororespiration.PTOX terminal oxidase IM1, IM, evm_27.TU.AmTr_v1.0_scaffold00074.38 0.8534432380580022 69 AMTR_s00071p00186380 Protein modification.phosphorylation.CMGC kinase superfamily.GSK kinase ATSK42, SK42, evm_27.TU.AmTr_v1.0_scaffold00071.195 0.8532583391713966 72 AMTR_s00100p00127450 Protein modification.peptide maturation.plastid.CtpA carboxy-terminal processing peptidase evm_27.TU.AmTr_v1.0_scaffold00100.46 0.8512807858057944 72 AMTR_s00078p00065640 RFC3, evm_27.TU.AmTr_v1.0_scaffold00078.39 0.850356707137032 74 AMTR_s00002p00212650 Enzyme classification.EC_1 oxidoreductases.EC_1.8 oxidoreductase acting on sulfur group of donor PMSR4, evm_27.TU.AmTr_v1.0_scaffold00002.223 0.8498196685426875 78 AMTR_s00032p00221170 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst ATFKBP13, FKBP13, evm_27.TU.AmTr_v1.0_scaffold00032.228 0.8497770429659078 79 AMTR_s00071p00117740 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp70 family.DnaK protein cpHsc70-1, evm_27.TU.AmTr_v1.0_scaffold00071.92 0.8477760005875304 97 AMTR_s00078p00073300 evm_27.TU.AmTr_v1.0_scaffold00078.44 0.8465710447238936 91 AMTR_s00033p00159870 Uncharacterized methyltransferase At2g41040, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00033.105 0.8465693068780581 88 AMTR_s00025p00151540 evm_27.TU.AmTr_v1.0_scaffold00025.170 0.8451715134195504 91