Sequence Description Alias PCC hrr AMTR_s00008p00166810 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.starch-debranching activities.isoamylase-type enzyme ATISA3, ISA3, evm_27.TU.AmTr_v1.0_scaffold00008.90 0.924581565103376 7 AMTR_s00071p00199450 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCD transporter evm_27.TU.AmTr_v1.0_scaffold00071.217 0.9233838006528552 23 AMTR_s00019p00172430 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecY1 component SCY1, evm_27.TU.AmTr_v1.0_scaffold00019.172 0.9221283787735298 3 AMTR_s00085p00105120 Carbohydrate metabolism.starch metabolism.degradation.phosphorylation.GWD glucan, water dikinase SEX1, SOP1, GWD, SOP, GWD1, evm_27.TU.AmTr_v1.0_scaffold00085.65 0.9186540444521818 10 AMTR_s00036p00206170 evm_27.TU.AmTr_v1.0_scaffold00036.123 0.9145274644895572 20 AMTR_s00009p00265580 DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00009.383 0.9139332749548948 19 AMTR_s00068p00029180 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.ZDS zeta-carotene desaturase PDE181, ZDS, SPC1, evm_27.TU.AmTr_v1.0_scaffold00068.6 0.9137107452436456 36 AMTR_s00004p00095690 RNA processing.organelle machineries.ribonuclease activities.PNP polynucleotide phosphorylase RIF10, PNP, evm_27.TU.AmTr_v1.0_scaffold00004.78 0.910507068804375 11 AMTR_s00002p00029100 Cytoskeleton.cp-actin-dependent plastid movement.KAC accessory motility factor KCA2, KAC2, evm_27.TU.AmTr_v1.0_scaffold00002.13 0.9099721530536473 12 AMTR_s00039p00096400 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.7-hydroxymethyl chlorophyll(ide) a reductase evm_27.TU.AmTr_v1.0_scaffold00039.54 0.9096054263731641 26 AMTR_s00103p00115980 Protein TAB2 homolog, chloroplastic OS=Arabidopsis thaliana ATAB2, evm_27.TU.AmTr_v1.0_scaffold00103.69 0.9072160418843379 19 AMTR_s00039p00053980 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00039.21 0.9064962023613976 22 AMTR_s00209p00028300 evm_27.TU.AmTr_v1.0_scaffold00209.8 0.9063886555659841 13 AMTR_s00029p00219050 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH7/9 component ftsh9, evm_27.TU.AmTr_v1.0_scaffold00029.331 0.9056715915379552 24 AMTR_s00033p00026050 Solute transport.carrier-mediated transport.CPA superfamily.CPA-2 family.proton:potassium cation antiporter (KEA-type) ATKEA3, KEA3, evm_27.TU.AmTr_v1.0_scaffold00033.11 0.904963530988201 53 AMTR_s00048p00132600 Pentatricopeptide repeat-containing protein At5g27270 OS=Arabidopsis thaliana EMB976, evm_27.TU.AmTr_v1.0_scaffold00048.78 0.9041727976261279 50 AMTR_s00017p00132450 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic110 component TIC110, ATTIC110, evm_27.TU.AmTr_v1.0_scaffold00017.54 0.9039773578972058 81 AMTR_s00045p00116920 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecA1 component SECA1, AtcpSecA, AGY1, evm_27.TU.AmTr_v1.0_scaffold00045.113 0.9031953718709884 57 AMTR_s00110p00094310 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase evm_27.TU.AmTr_v1.0_scaffold00110.55 0.9029841729180595 38 AMTR_s00096p00107320 Coenzyme metabolism.phylloquinone synthesis.1,4-dihydroxy-2-naphthoyl-CoA synthase ECHID, DHNS, evm_27.TU.AmTr_v1.0_scaffold00096.66 0.901751848500367 35 AMTR_s00009p00072720 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor SIGF, SIG6, SOLDAT8, ATSIG6, evm_27.TU.AmTr_v1.0_scaffold00009.21 0.900722068866808 62 AMTR_s00090p00178540 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.ISE2 RNA helicase ISE2, PDE317, EMB25, evm_27.TU.AmTr_v1.0_scaffold00090.110 0.8993959794285976 62 AMTR_s00029p00114850 evm_27.TU.AmTr_v1.0_scaffold00029.125 0.8989263715560913 55 AMTR_s00045p00205250 Protein biosynthesis.aminoacyl-tRNA synthetase activities.isoleucine-tRNA ligase OVA2, evm_27.TU.AmTr_v1.0_scaffold00045.272 0.8974562052086612 65 AMTR_s00040p00202990 2-carboxy-D-arabinitol-1-phosphatase OS=Triticum aestivum evm_27.TU.AmTr_v1.0_scaffold00040.206 0.8971224825400793 68 AMTR_s00329p00011770 Solute transport.carrier-mediated transport.MEX maltose transporter MEX1, RCP1, evm_27.TU.AmTr_v1.0_scaffold00329.2 0.8971088389859927 26 AMTR_s00017p00235750 Coenzyme metabolism.tetrahydrofolate synthesis.tetrahydrofolate (THF) interconversions.5,10-methenyl-THF synthetase evm_27.TU.AmTr_v1.0_scaffold00017.195 0.8962518767287347 28 AMTR_s00077p00134480 Protein modification.phosphorylation.CMGC kinase superfamily.STN kinase STN8, evm_27.TU.AmTr_v1.0_scaffold00077.129 0.8955468156770162 41 AMTR_s00056p00190910 Enzyme classification.EC_2 transferases.EC_2.7 transferase transferring phosphorus-containing group evm_27.TU.AmTr_v1.0_scaffold00056.181 0.8953075749195766 30 AMTR_s00031p00204460 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.cpSRP54 component 54CP, SRP54CP, CPSRP54, FFC, evm_27.TU.AmTr_v1.0_scaffold00031.99 0.8949705492091884 92 AMTR_s00042p00221280 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen CYP97B3, evm_27.TU.AmTr_v1.0_scaffold00042.72 0.8946135954895876 95 AMTR_s00065p00022170 RNA biosynthesis.organelle machineries.RNA polymerase activities.nuclear-encoded organellar RNA polymerase (NEP) PDE319, SCA3, evm_27.TU.AmTr_v1.0_scaffold00065.7 0.8946012864746368 49 AMTR_s00020p00012640 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea evm_27.TU.AmTr_v1.0_scaffold00020.3 0.8944103818778709 93 AMTR_s00018p00168540 DNA mismatch repair protein MSH1, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00018.94 0.8940624684432139 52 AMTR_s00059p00156080 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCS cytochrome f/c6 maturation system (system II).CcsB component evm_27.TU.AmTr_v1.0_scaffold00059.142 0.8925281392309493 62 AMTR_s00009p00260200 evm_27.TU.AmTr_v1.0_scaffold00009.319 0.8923317779180854 37 AMTR_s00007p00219480 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.uroporphyrinogen III decarboxylase HEME2, evm_27.TU.AmTr_v1.0_scaffold00007.207 0.8917359144378646 74 AMTR_s00031p00061040 Uncharacterized protein At5g03900, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00031.26 0.8915577663503401 63 AMTR_s00029p00240470 Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 1 OS=Arabidopsis thaliana WEB1, evm_27.TU.AmTr_v1.0_scaffold00029.410 0.8906659765539372 79 AMTR_s00109p00113060 Redox homeostasis.low-molecular-weight scavengers.tocopherol biosynthesis.tocopherol cyclase (VTE1/TC) ATSDX1, VTE1, evm_27.TU.AmTr_v1.0_scaffold00109.111 0.8902329592562492 57 AMTR_s00049p00107230 evm_27.TU.AmTr_v1.0_scaffold00049.81 0.8889041663337013 97 AMTR_s00167p00056240 Lipid metabolism.lipid degradation.triacylglycerol lipase activities.diacyl-/triacylglycerol lipase activities.LIP-type lipase ATLIP1, LIP1, evm_27.TU.AmTr_v1.0_scaffold00167.23 0.8877667496622456 44 AMTR_s00090p00180780 ISE2, PDE317, EMB25, evm_27.TU.AmTr_v1.0_scaffold00090.111 0.8875116034963616 45 AMTR_s00083p00031040 Photosynthesis.photorespiration.aminotransferases.glutamate-glyoxylate transaminase GGAT1, GGT1, AOAT1, evm_27.TU.AmTr_v1.0_scaffold00083.7 0.8866632469038179 47 AMTR_s00175p00037000 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase ATATH8, evm_27.TU.AmTr_v1.0_scaffold00175.11 0.8846642688131865 94 AMTR_s00009p00220110 Protein degradation.peptidase families.metallopeptidase activities.aminopeptidase activities.M1 neutral/aromatic-hydroxyl amino acid aminopeptidase evm_27.TU.AmTr_v1.0_scaffold00009.158 0.884146011800351 50 AMTR_s00006p00258450 Coenzyme metabolism.phylloquinone synthesis.multifunctional phylloquinone synthesis protein (PHYLLO) evm_27.TU.AmTr_v1.0_scaffold00006.206 0.8840993614394631 61 AMTR_s00024p00130820 evm_27.TU.AmTr_v1.0_scaffold00024.77 0.8839056079483776 68 AMTR_s00002p00266310 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.glutathione reductase (GR) GR, EMB2360, ATGR2, evm_27.TU.AmTr_v1.0_scaffold00002.507 0.8838585081637034 69 AMTR_s00006p00036530 GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00006.9 0.8824500512288715 54 AMTR_s00109p00045690 Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00109.32 0.8819994393040501 96 AMTR_s00077p00105110 DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00077.90 0.8814786079447914 63 AMTR_s00057p00143260 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease DEGP2, evm_27.TU.AmTr_v1.0_scaffold00057.128 0.8814456652224874 86 AMTR_s00106p00046740 Protein biosynthesis.aminoacyl-tRNA synthetase activities.leucine-tRNA ligase EMB2369, evm_27.TU.AmTr_v1.0_scaffold00106.25 0.8805780907660034 97 AMTR_s00175p00057810 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.4-hydroxy-3-methylbut-2-enyl diphosphate synthase CSB3, CLB4, GCPE, HDS, ISPG, evm_27.TU.AmTr_v1.0_scaffold00175.30 0.8795042966654119 68 AMTR_s00071p00186380 Protein modification.phosphorylation.CMGC kinase superfamily.GSK kinase ATSK42, SK42, evm_27.TU.AmTr_v1.0_scaffold00071.195 0.8794679358621953 63 AMTR_s00340p00004320 RNA processing.organelle machineries.RNA splicing.mitochondrial RNA splicing.group-II intron splicing.mCSF splicing factor evm_27.TU.AmTr_v1.0_scaffold00340.1 0.876382092790359 72 AMTR_s00070p00046580 Chaperone protein dnaJ A7A, chloroplastic OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00070.20 0.8754814811399415 70 AMTR_s00109p00097700 Malonate--CoA ligase OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00109.85 0.8754123406090675 71 AMTR_s00025p00248100 Probable transmembrane GTPase FZO-like, chloroplastic OS=Arabidopsis thaliana FZL, evm_27.TU.AmTr_v1.0_scaffold00025.402 0.8743049671341449 80 AMTR_s00060p00016430 Coenzyme metabolism.tetrapyrrol biosynthesis.heme synthesis and modification.ferrochelatase FC-II, FC2, ATFC-II, evm_27.TU.AmTr_v1.0_scaffold00060.3 0.873667792510073 73 AMTR_s00092p00109950 Homeobox-DDT domain protein RLT3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.68 0.8732109169110238 79 AMTR_s00016p00187060 Amino acid metabolism.biosynthesis.shikimate family.shikimate pathway.shikimate kinase ATSKL1, SKL1, evm_27.TU.AmTr_v1.0_scaffold00016.149 0.8724807993084518 75 AMTR_s00024p00220440 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.electron donor-binding subcomplex E.NdhU component evm_27.TU.AmTr_v1.0_scaffold00024.215 0.8723775505060883 78 AMTR_s00078p00105470 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.amylase activities.alpha amylase AMY3, ATAMY3, evm_27.TU.AmTr_v1.0_scaffold00078.76 0.8720192775535506 98 AMTR_s01569p00009850 Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold01569.1 0.8711450160709098 80 AMTR_s00048p00030920 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo assembly.RAF2 assembly factor evm_27.TU.AmTr_v1.0_scaffold00048.6 0.8705440293685366 83 AMTR_s00003p00129460 Putative GTP diphosphokinase RSH1, chloroplastic OS=Arabidopsis thaliana RSH1, ATRSH1, AT-RSH1, evm_27.TU.AmTr_v1.0_scaffold00003.96 0.8703885015067467 85 AMTR_s00061p00120110 Carbohydrate metabolism.starch metabolism.synthesis.ADP-glucose pyrophosphorylase ADG1, APS1, evm_27.TU.AmTr_v1.0_scaffold00061.96 0.869713578293146 87 AMTR_s00203p00014010 Disease resistance protein RFL1 OS=Arabidopsis thaliana RFL1, evm_27.TU.AmTr_v1.0_scaffold00203.3 0.869089579667505 88 AMTR_s00016p00219550 evm_27.TU.AmTr_v1.0_scaffold00016.199 0.8690716217862375 89 AMTR_s00024p00162030 Protein trichome birefringence OS=Arabidopsis thaliana TBR 0.8687615621975057 90 AMTR_s00061p00089940 Uncharacterized protein At3g52155, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00061.67 0.867632448451224 98 AMTR_s00041p00056550 Protein degradation.peptidase families.serine-type peptidase activities.mitochondrion Clp-type protease complex.ClpP2 proteolytic component CLP2, CLPR2, NCLPP2, evm_27.TU.AmTr_v1.0_scaffold00041.27 0.865345049200484 98