Sequence Description Alias PCC hrr AMTR_s00047p00218860 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.FLN2 regulatory factor FLN2, evm_27.TU.AmTr_v1.0_scaffold00047.167 0.940248022172268 5 AMTR_s00021p00151130 evm_27.TU.AmTr_v1.0_scaffold00021.107 0.9367053773848034 2 AMTR_s00117p00114400 Probable acyl-activating enzyme 16, chloroplastic OS=Arabidopsis thaliana AAE15, evm_27.TU.AmTr_v1.0_scaffold00117.48 0.9301892870030501 6 AMTR_s00011p00266100 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor SIGB, SIG2, SIGA, SIG1, RPOD1, evm_27.TU.AmTr_v1.0_scaffold00011.228 0.9252209045447446 17 AMTR_s00040p00188540 Carbohydrate metabolism.starch metabolism.synthesis.starch branching enzyme SBE2.2, evm_27.TU.AmTr_v1.0_scaffold00040.184 0.9095648986333819 9 AMTR_s00036p00206170 evm_27.TU.AmTr_v1.0_scaffold00036.123 0.9077564525597056 37 AMTR_s00110p00094310 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase evm_27.TU.AmTr_v1.0_scaffold00110.55 0.9066026832990187 32 AMTR_s00042p00221280 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen CYP97B3, evm_27.TU.AmTr_v1.0_scaffold00042.72 0.9054683564988976 55 AMTR_s00045p00149950 DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00045.161 0.9037239416084937 20 AMTR_s00039p00053980 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00039.21 0.9036112144215204 28 AMTR_s00040p00202990 2-carboxy-D-arabinitol-1-phosphatase OS=Triticum aestivum evm_27.TU.AmTr_v1.0_scaffold00040.206 0.9014289223318129 58 AMTR_s00090p00178540 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.ISE2 RNA helicase ISE2, PDE317, EMB25, evm_27.TU.AmTr_v1.0_scaffold00090.110 0.9007112359061604 55 AMTR_s00085p00105120 Carbohydrate metabolism.starch metabolism.degradation.phosphorylation.GWD glucan, water dikinase SEX1, SOP1, GWD, SOP, GWD1, evm_27.TU.AmTr_v1.0_scaffold00085.65 0.9006473228098076 34 AMTR_s00106p00063870 evm_27.TU.AmTr_v1.0_scaffold00106.40 0.9002791097243992 36 AMTR_s00065p00022170 RNA biosynthesis.organelle machineries.RNA polymerase activities.nuclear-encoded organellar RNA polymerase (NEP) PDE319, SCA3, evm_27.TU.AmTr_v1.0_scaffold00065.7 0.8995389042039257 33 AMTR_s00017p00253090 Protein modification.acetylation.sirtuin-type lysine deacetylase SRT2, AtSRT2, evm_27.TU.AmTr_v1.0_scaffold00017.263 0.8983355765722413 29 AMTR_s00046p00214930 Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana CRR22, evm_27.TU.AmTr_v1.0_scaffold00046.141 0.8978768725054465 41 AMTR_s00022p00070510 Protein modification.peptide maturation.plastid.SPP stromal processing peptidase evm_27.TU.AmTr_v1.0_scaffold00022.51 0.897779910812513 61 AMTR_s00066p00130420 Rhodanese-like domain-containing protein 4A, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.123 0.8967481010673518 19 AMTR_s00011p00203340 GTPase ERA-like, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00011.71 0.8963723081438547 33 AMTR_s00078p00161460 DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica RH39, evm_27.TU.AmTr_v1.0_scaffold00078.147 0.8963156252968681 49 AMTR_s00029p00193780 Fructokinase-like 1, chloroplastic OS=Arabidopsis thaliana FLN1, evm_27.TU.AmTr_v1.0_scaffold00029.262 0.8951543178033416 66 AMTR_s00007p00247090 evm_27.TU.AmTr_v1.0_scaffold00007.270 0.8947274251678865 23 AMTR_s00058p00193720 Protein modification.dephosphorylation.tyrosine protein phosphatase (PTP) superfamily.dual-specificity phosphatase families.LSF phosphoglucan phosphatase LSF1, evm_27.TU.AmTr_v1.0_scaffold00058.193 0.8933365376505139 34 AMTR_s00099p00089660 evm_27.TU.AmTr_v1.0_scaffold00099.67 0.8919394087963535 40 AMTR_s00175p00037000 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase ATATH8, evm_27.TU.AmTr_v1.0_scaffold00175.11 0.8916855596769555 69 AMTR_s00001p00048980 Carbohydrate metabolism.starch metabolism.synthesis.starch branching enzyme SBE2.2, evm_27.TU.AmTr_v1.0_scaffold00001.28 0.890579814518561 28 AMTR_s00019p00039970 Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana PGR3, evm_27.TU.AmTr_v1.0_scaffold00019.19 0.8888855433461605 30 AMTR_s00009p00241130 Pentatricopeptide repeat-containing protein At5g14770, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00009.214 0.8880735719448285 93 AMTR_s00029p00034550 Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.15 0.8877507722756223 33 AMTR_s00048p00155800 Probable GTP diphosphokinase RSH3, chloroplastic OS=Arabidopsis thaliana RSH3, AT-RSH3, ATRSH3, evm_27.TU.AmTr_v1.0_scaffold00048.111 0.8867520676671717 34 AMTR_s00153p00036670 Lipid metabolism.galactolipid and sulfolipid synthesis.plastidial UDP-glucose pyrophosphorylase UGP3, evm_27.TU.AmTr_v1.0_scaffold00153.14 0.8865200162372702 49 AMTR_s00019p00208640 Pentatricopeptide repeat-containing protein At5g10690 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.251 0.8860291042074426 46 AMTR_s00103p00143070 Pentatricopeptide repeat-containing protein At3g02330, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00103.100 0.8847984554382827 37 AMTR_s00011p00265800 Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidopsis thaliana EMB1270, evm_27.TU.AmTr_v1.0_scaffold00011.222 0.8847200962635783 84 AMTR_s00003p00268300 GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00003.397 0.8844653327386254 80 AMTR_s00019p00220910 Pentatricopeptide repeat-containing protein At1g03100, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.279 0.8840875547870027 41 AMTR_s00058p00057440 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor EMB93, SOLDAT10, evm_27.TU.AmTr_v1.0_scaffold00058.26 0.8840705058597812 42 AMTR_s00059p00159100 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.4-hydroxy-3-methylbut-2-enyl diphosphate reductase CLB6, ISPH, HDR, evm_27.TU.AmTr_v1.0_scaffold00059.146 0.8837229774154777 65 AMTR_s00062p00195710 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH12 component FTSH12, EMB36, EMB156, EMB1047, evm_27.TU.AmTr_v1.0_scaffold00062.205 0.8831848653212215 53 AMTR_s00016p00242110 ATP-dependent DNA helicase At3g02060, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00016.258 0.8829825800183267 78 AMTR_s00029p00219050 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH7/9 component ftsh9, evm_27.TU.AmTr_v1.0_scaffold00029.331 0.8824209141900397 65 AMTR_s00049p00131450 Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana DOT4, evm_27.TU.AmTr_v1.0_scaffold00049.110 0.8822238181466907 50 AMTR_s00008p00166810 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.starch-debranching activities.isoamylase-type enzyme ATISA3, ISA3, evm_27.TU.AmTr_v1.0_scaffold00008.90 0.881877921329158 78 AMTR_s00160p00077470 evm_27.TU.AmTr_v1.0_scaffold00160.29 0.8804515386440434 54 AMTR_s00329p00011770 Solute transport.carrier-mediated transport.MEX maltose transporter MEX1, RCP1, evm_27.TU.AmTr_v1.0_scaffold00329.2 0.8785768392898385 63 AMTR_s00101p00064110 Lipid metabolism.galactolipid and sulfolipid synthesis.UDP-sulfoquinovose synthase SQD1, evm_27.TU.AmTr_v1.0_scaffold00101.37 0.8776761310069104 87 AMTR_s00156p00067780 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.starch-debranching activities.isoamylase-type enzyme DBE1, ATISA2, BE2, ISA2, evm_27.TU.AmTr_v1.0_scaffold00156.36 0.8773967802025838 58 AMTR_s00024p00251490 Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00024.341 0.8773180934454116 79 AMTR_s00110p00042430 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp100 protein CLPB3, CLPB-P, APG6, evm_27.TU.AmTr_v1.0_scaffold00110.17 0.8771576617526836 61 AMTR_s00072p00151180 Phosphoglycerate kinase 1, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00072.87 0.8760049878399336 63 AMTR_s00130p00019530 Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis thaliana DOT4, evm_27.TU.AmTr_v1.0_scaffold00130.4 0.8745102969928974 66 AMTR_s00175p00057810 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.4-hydroxy-3-methylbut-2-enyl diphosphate synthase CSB3, CLB4, GCPE, HDS, ISPG, evm_27.TU.AmTr_v1.0_scaffold00175.30 0.8735053194157322 90 AMTR_s00016p00242080 Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial OS=Arabidopsis thaliana CRR28, evm_27.TU.AmTr_v1.0_scaffold00016.257 0.873501091010919 91 AMTR_s00122p00077720 Photosynthesis.photorespiration.glycerate kinase evm_27.TU.AmTr_v1.0_scaffold00122.28 0.8732747474622287 93 AMTR_s00078p00105470 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.amylase activities.alpha amylase AMY3, ATAMY3, evm_27.TU.AmTr_v1.0_scaffold00078.76 0.8732241709249705 90 AMTR_s00002p00190720 Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.170 0.8729587086599937 73 AMTR_s00077p00168500 evm_27.TU.AmTr_v1.0_scaffold00077.183 0.8726762019398588 72 AMTR_s00002p00234380 evm_27.TU.AmTr_v1.0_scaffold00002.271 0.8712822579147554 75 AMTR_s00120p00025450 evm_27.TU.AmTr_v1.0_scaffold00120.3 0.8710057086149869 76 AMTR_s00002p00254720 Solute transport.channels.CorA family.MRS/MGT metal cation transporter MGT10, GMN10, MRS2-11, ATMGT10, evm_27.TU.AmTr_v1.0_scaffold00002.387 0.8706101267772184 77 AMTR_s00040p00181990 Neutral/alkaline invertase 3, chloroplastic OS=Oryza sativa subsp. japonica INV-E, At-A/N-InvE, evm_27.TU.AmTr_v1.0_scaffold00040.175 0.8705516041218484 100 AMTR_s00130p00051210 evm_27.TU.AmTr_v1.0_scaffold00130.20 0.8699010302628732 79 AMTR_s00007p00266080 Protein WHATS THIS FACTOR 1 OS=Zea mays evm_27.TU.AmTr_v1.0_scaffold00007.368 0.8682916997603606 83 AMTR_s00109p00097700 Malonate--CoA ligase OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00109.85 0.868194611252241 84 AMTR_s00048p00085290 Plastid lipid-associated protein 3, chloroplastic OS=Brassica campestris evm_27.TU.AmTr_v1.0_scaffold00048.41 0.8674801038759086 86 AMTR_s00163p00072710 Protein biosynthesis.aminoacyl-tRNA synthetase activities.phenylalanine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00163.29 0.8674772064640085 87 AMTR_s00071p00074520 PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00071.45 0.8668651605227927 88 AMTR_s00009p00220110 Protein degradation.peptidase families.metallopeptidase activities.aminopeptidase activities.M1 neutral/aromatic-hydroxyl amino acid aminopeptidase evm_27.TU.AmTr_v1.0_scaffold00009.158 0.8656445117213567 91 AMTR_s00020p00108940 Protein degradation.peptidase families.cysteine-type peptidase activities.ubiquitin-specific protease UBP2, ATUBP2, evm_27.TU.AmTr_v1.0_scaffold00020.39 0.8654246054823047 93 AMTR_s00029p00193710 Fructokinase-like 1, chloroplastic OS=Arabidopsis thaliana FLN1, evm_27.TU.AmTr_v1.0_scaffold00029.261 0.8653538699168946 94