Heatmap: Cluster_20 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Ovule (0-1 DPA)
Ovule (2 & 5 DPA)
Ovary
Microspore
Generative cell
Pollen
Sperm cell
Pollen grain
Pollen tube
Pollen tube (1.5h)
Pollen tube (3h)
Pollen tube (9h)
Pistil
Style (before flowering)
Style (after flowering)
Style (pollinated, after flowering)
Flower (buds)
Flowers
Ovary wall/pericarp (0-1 DPA)
Ovary wall/pericarp (2 & 5 DPA)
Pericarp/Exocarp (4 DPA)
Pericarp
Pericarp (5 DPA)
Pericarp (7 DPA)
Pericarp (10 DPA)
Fruit (mature green)
Fruit (breaker stage)
Septum (7 DPA)
Septum (10 DPA)
Septum/Seed (4 DPA)
Seed (5 DPA)
Seed (7 DPA)
Seed (10 DPA)
Seeds (10 DPA)
Seeds (20 DPA)
Seeds (30 DPA)
Seeds (Pk-stem)
Seeds (Br-stem)
Seeds (Pk-equatorial)
Seeds (Pk-stylar)
Seeds (Br-stylar)
Seeds
Seeds (RR)
Seeds (LR)
Seeds (MG-equatorial)
Hypocotyl
Seedling (leaves)
Seedling (roots)
Callus
Meristem (vegetative)
Meristem
Apical meristem
Leaf
Root
Root (differentiation zone)
Root (elongation zone)
Root (meristematic zone)
Root hair cells
-0.83 -0.1 0.63 3.73 -0.44 -6.12 -4.54 -5.78 -6.05 -6.31 -5.99 -6.39 0.81 -0.92 -1.64 -1.24 -2.5 -1.12 0.63 0.06 -2.35 0.25 -4.82 -3.2 -3.97 -0.43 -1.12 -2.64 -2.09 -3.04 -3.29 -3.37 -3.11 1.58 -1.61 -3.73 -0.41 -0.76 -0.92 0.97 -0.7 -0.37 -1.09 -0.66 -1.34 -0.73 -1.71 -0.2 3.73 0.66 -1.02 -1.09 -0.43 -0.49 -0.39 -1.84 -1.3 -1.45
-1.3 - 0.64 -3.53 - - - - - - - - - - - - 2.03 0.93 1.03 1.12 - 1.47 - 0.17 -0.4 1.3 - - -0.11 - - - - - - 0.58 - 1.6 2.55 2.04 - 0.45 - - - -1.81 1.23 1.14 2.1 - - 0.72 3.38 -0.67 - - - -
-1.79 0.04 -0.06 -2.35 - - - - -6.53 - - - 1.34 -0.69 -0.85 -0.29 -0.41 0.89 2.4 2.04 0.46 0.86 0.0 -0.14 0.18 2.89 -0.22 -0.97 -0.17 -1.09 -1.57 -1.01 -1.28 - - -2.64 - - - - - -4.67 - - - 0.69 -2.46 -1.09 0.61 0.56 0.62 0.27 3.72 - - - - -
- -4.45 -1.96 0.28 -1.74 - - -7.85 -5.24 -4.39 - -4.31 -0.24 0.89 1.28 0.49 4.32 3.16 -2.91 -4.62 -4.18 - -0.3 0.03 0.08 -0.51 -0.94 - - - -2.23 -3.86 -4.37 - - - - - - - - -5.71 - - - -1.01 -0.88 0.97 -1.56 - - 2.3 2.73 -1.22 -1.18 -4.43 - -
-3.99 -6.95 0.07 -1.29 -4.74 -4.51 -4.35 -4.6 -4.66 -2.73 -2.55 -3.32 -0.44 -0.34 0.62 -0.34 2.79 3.17 -5.57 - - -2.91 -2.47 -0.36 0.07 3.03 3.95 - - - -4.27 -2.17 -1.96 - - - - -6.69 - - - -8.25 - - - -2.47 - -1.82 -1.9 -6.56 -6.94 2.2 1.99 -2.02 - -4.84 -7.03 -4.27
-0.85 -2.06 -0.92 2.15 -0.06 - -1.11 -0.05 -1.44 - -5.17 - 1.84 -0.87 -0.68 -1.52 3.46 0.99 -3.47 -2.52 -0.56 -3.01 0.1 -0.49 -0.6 2.08 0.53 -0.89 -0.71 -2.1 -0.46 -0.4 -1.17 - -2.39 - -0.31 -1.57 -0.66 -0.4 -2.25 -1.71 -0.9 -2.21 -0.48 -1.44 -2.04 0.08 2.24 0.21 0.59 -0.42 1.43 -0.64 -2.3 -2.18 -2.96 -1.08
-4.21 - - 0.65 2.83 - 1.24 -4.19 -5.46 - -5.93 - -2.5 -5.38 - -5.2 2.28 -0.19 - - - - - - -3.54 -3.01 - - - - - - -5.82 -1.8 2.85 3.39 - - - -3.12 - -0.09 - - 2.08 2.06 - 1.8 1.42 - - -4.2 2.39 0.56 -1.41 - - -
1.81 -0.8 -0.41 0.09 -0.96 -1.6 0.24 -0.38 0.09 -0.44 -0.37 -0.6 -0.01 -1.57 -1.6 -1.06 0.7 0.21 -0.51 -1.29 -2.11 -2.53 -1.55 -1.92 -2.32 -0.45 -2.22 -1.88 -1.85 -1.7 -1.24 -0.96 -0.77 -4.44 0.63 -0.27 1.0 0.89 0.8 0.78 0.4 0.45 1.13 1.08 0.67 1.46 -4.59 2.01 0.25 1.06 0.72 -2.77 0.03 0.1 0.32 -0.28 -0.51 -1.25
-1.22 -3.88 -2.94 1.05 4.35 - 3.85 -7.21 -4.36 - - - -0.24 -1.15 -2.2 -2.04 -0.72 -1.8 - - - -3.14 -4.28 -3.34 -2.94 -3.23 -2.76 -4.59 - - -2.65 -3.49 -5.68 - - - -1.25 -1.84 -1.21 -2.59 -1.21 -2.04 - - -2.37 -3.1 - 0.92 1.03 - -3.36 -4.18 3.0 0.98 - -3.79 -4.0 -1.69
-0.43 -0.26 0.68 2.36 2.39 - - - - - - - -0.7 -3.35 -2.8 -2.24 -1.7 -1.35 1.56 1.92 - -1.64 -1.88 -2.13 -0.97 -1.73 - -1.15 -2.4 - -1.19 -1.6 -2.28 1.09 0.34 - 1.83 0.34 - - - -1.23 - - - 0.65 - 2.88 1.31 1.41 1.22 -1.63 0.51 -0.7 -0.96 - 1.61 0.81
-1.46 -3.35 -2.04 2.1 3.61 - -1.54 -4.47 - - - - 1.73 -1.34 -1.15 -1.87 -0.5 -1.31 -1.11 -0.34 -1.37 - -1.62 -1.85 -0.98 -0.62 -2.61 -0.79 -1.02 -1.21 -1.86 -0.5 -1.36 - -0.82 -2.47 0.18 -1.13 0.25 1.11 0.25 -0.75 0.65 - -0.71 -1.09 -3.32 1.86 1.67 -4.36 -0.16 - 2.51 1.27 -1.45 - -0.65 0.36
- - 1.97 - 2.02 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.14 - - - - - - - - 3.88 - - - - -
- - - - - - - - - - - - 0.96 - - 0.41 4.17 0.54 - - - - - 1.27 - - - - - - 1.11 - - - - - - - - - - - - - - - - 1.06 2.22 - - - 3.9 2.03 - - - 2.31
- - - - - - - - - - - - - - - - 0.11 -1.94 - - - - - - - 0.47 0.46 - - - - - - - - - - - - - - - 1.86 - - - -1.27 3.01 0.55 - - - 5.04 2.9 - - - -
- - 1.49 - -0.03 - 2.43 - - - - - -1.59 0.54 0.9 0.27 1.96 2.5 - - 0.02 2.25 - 0.06 0.06 0.54 2.73 -0.54 - - - 0.09 -0.98 - - - - - - - - -3.33 - - - - -0.96 1.67 0.15 - - - 3.3 0.57 - - - -
- - - - - - - - - - - - - - - - 1.2 - - - - 3.11 - -0.6 -0.24 - - - - - 2.38 3.03 4.47 - - - - - - - - - - - - - - - 0.38 - - - 3.14 - - - - -
- - - 5.86 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - 4.23 - - - - - - - - 2.65 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 4.27 - - - 3.77 - - - - -
- 0.2 1.64 2.45 2.39 - - - - - - - -0.7 - - -5.8 1.22 -0.74 2.5 1.04 - - - - - - - - -0.09 - - - -0.15 - 2.06 - - 0.75 - - - 1.49 - - - - - 0.16 2.99 - - - 3.16 1.05 - - 0.18 -
- - 1.13 5.09 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 4.42 - - - -2.21 - - - - -
2.67 1.05 0.55 - 1.63 - 2.08 1.27 2.23 - -0.02 -0.74 0.16 - -0.02 - 1.64 0.4 - - - - - - - - - - - - - -1.05 -0.85 - - - - - - - 3.72 -2.0 - - - - - - 2.77 - - - -0.11 1.73 - - - -
- - - 4.88 2.86 - - - - - - - 1.36 - - - - - - - - - - - - - - - -9.04 - - - - - - - - - - - - - - - - - - - 4.22 - - - -2.16 - - - - -
- - 2.95 -2.59 -2.4 - 1.24 -4.2 -6.31 - - - -3.33 -3.81 - -5.11 - - - - -1.17 - - -5.69 -1.41 -0.53 -4.28 -3.11 -0.45 -2.36 -1.19 -0.02 2.18 - 2.46 -2.38 1.37 1.33 2.02 1.72 -0.37 1.2 2.68 2.45 -0.17 - - 0.18 -0.71 -4.22 -3.2 - -0.22 0.94 - - - -
1.34 1.34 0.9 -2.15 - - - 0.06 -0.24 - - - -1.93 2.64 0.97 0.91 1.03 -0.52 0.38 -0.44 1.61 1.43 - -0.84 0.26 1.15 -0.81 2.01 2.0 1.76 -2.33 0.3 0.28 -2.17 1.35 -1.19 -2.07 -1.24 - -3.35 -1.97 -2.12 -0.57 - - -0.82 -4.08 -2.05 -3.32 -0.87 0.7 - -0.02 -1.96 - - - -
2.46 3.71 2.85 - - - - -1.44 0.94 - - - - 2.72 1.24 1.07 - -1.14 - -0.3 0.26 2.23 - - - 0.27 - 0.14 0.39 - - -1.95 - - - - - - - - - - - - - 1.7 - -1.28 -1.24 - 0.38 - 0.76 -0.47 - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - 4.56 4.7 - 3.06 - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - 5.81 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.9 - - - - -
-3.33 - 2.26 -1.85 2.62 -0.34 0.36 -0.24 -0.47 0.36 0.56 0.29 -2.4 -3.04 -3.08 -3.19 1.4 -1.31 - - -0.46 -2.39 -2.27 -1.75 -0.55 -1.92 -6.76 -0.01 0.58 -0.02 -0.57 -0.1 0.44 -1.05 2.19 -0.3 1.43 0.71 0.51 0.94 0.35 0.49 1.45 1.01 -0.49 - -4.18 0.24 -1.76 -5.34 -3.83 -3.1 0.13 0.89 -5.34 -3.43 -4.05 -3.41
- - - 4.07 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.36 - - - - - - - - -
- - - 5.81 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.9 - - - - -
-1.99 -1.24 -1.72 0.58 4.75 -1.86 -0.37 -1.9 -2.31 -1.54 -1.44 -1.43 -0.36 -0.52 -1.24 -1.96 -0.68 -0.89 -1.55 -0.32 -0.91 -1.52 1.21 0.68 0.79 0.45 -1.94 -0.79 -0.48 -0.88 -0.0 0.42 0.99 -1.39 -1.32 -2.92 -5.55 -4.35 - -4.3 -3.51 -3.26 - - -3.02 -0.8 -4.58 -0.42 0.33 -1.33 -2.02 -1.55 -0.24 -0.5 -2.36 -1.86 -2.02 -6.07
-8.27 - -1.42 -3.57 -3.52 - - -7.21 -9.9 - -6.39 -9.64 -3.25 -2.18 -3.91 -3.98 -0.13 0.22 -3.24 -1.27 -0.83 1.05 2.47 2.47 2.44 1.24 -0.86 -1.81 0.24 -1.55 1.18 1.13 1.21 - -0.78 -1.6 -4.19 -3.84 -4.46 -2.27 -2.66 -3.37 -2.93 -3.84 -3.2 -0.32 -3.86 2.09 2.42 -8.96 -5.2 -2.59 0.5 0.76 1.48 -0.31 1.53 0.73
0.94 0.66 1.76 0.28 -2.08 -5.01 -2.37 -3.65 -3.83 -4.28 -4.34 -4.34 -0.37 0.76 0.33 0.08 1.29 0.94 0.8 0.46 -0.45 1.07 -0.8 -0.57 -0.45 -0.2 1.87 -0.3 -0.1 -0.35 -0.43 -0.37 -0.36 -0.7 -1.23 -1.52 0.36 0.06 0.39 0.13 0.05 -0.02 -0.39 0.02 -0.87 -0.24 -1.64 0.79 -0.71 -0.33 -0.7 -0.97 0.21 1.37 -0.28 -0.79 -0.02 -0.49
1.22 0.34 1.51 -1.19 - - - - - - - - -4.42 -1.39 -1.88 -0.31 0.81 -1.87 1.63 1.86 0.66 - 0.72 0.5 0.76 1.05 -0.52 1.29 0.81 0.48 0.58 0.45 0.21 - 0.77 - 1.01 -0.06 0.49 -0.02 - -0.19 0.63 0.53 -0.67 - - -0.21 -3.27 1.66 1.49 - -0.6 1.59 - - - -
- - 2.0 - - - - 2.01 0.26 - - - - - -1.79 -0.8 3.7 3.04 - - - - - - - - - - - - -2.55 - -3.74 - - - - - - - - - - - - -1.1 - 2.84 -1.34 - - - 2.73 3.57 - - - -
- - 0.81 - - - -1.37 2.45 0.69 - -4.73 - - -0.47 -0.41 -0.07 4.57 2.55 - - - - - - - - - - - - - -5.06 -3.67 - - - - - - - - - - - - - - 1.86 -1.73 - - - 1.99 3.13 - - - -
- - - 4.42 - - - - - - - - 3.51 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 4.66 - - - - - - - - -
- -2.06 3.52 - - - -2.27 - - - -5.23 - - - - -3.94 - - -1.13 - - - - -3.25 - -1.87 - - -2.3 - -2.25 -0.33 0.65 1.77 1.17 - 0.32 1.07 0.39 1.15 0.39 0.92 1.45 - - -1.51 - 3.41 - - - - 1.7 3.28 - - - -
- - - 5.86 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
0.59 -0.37 0.02 - 0.18 - - -3.43 -3.52 - - -3.51 -0.86 - -2.24 -1.08 -0.63 -0.82 - - - - - -3.7 -2.04 1.0 -1.63 - 0.41 0.23 0.59 0.39 2.27 2.02 2.37 - 1.71 - - 1.71 1.22 2.23 1.8 - 2.55 - - -0.25 0.89 - - - 1.3 -1.77 -0.97 - - -
- - - -0.07 1.84 - - - - - - - - - - - 2.32 -0.91 - - - - - -0.12 -1.48 - - - 1.08 0.53 - 0.53 1.18 - 1.53 1.13 1.88 0.93 - - - -0.1 3.07 2.95 1.81 1.19 - - 2.46 - - - -1.49 - - - - -
0.44 1.32 2.48 0.74 - - -4.21 -7.34 -5.41 -5.08 -4.61 -4.52 -0.61 -2.04 -3.03 -2.62 1.89 1.42 -0.56 -4.31 -0.27 2.29 -2.28 -0.86 -0.1 0.82 0.6 -0.38 0.72 -0.35 -0.93 -0.8 0.02 - -0.55 -1.3 0.39 -1.33 -0.55 0.18 -0.55 0.23 0.74 0.49 - 0.07 - 1.04 1.42 -5.04 -4.69 - 0.55 2.44 - - -3.19 -
- - 2.57 2.38 - 0.04 -0.13 - -1.92 - - - 0.91 - - - 2.05 -0.2 - - - 1.61 - -1.87 0.12 0.51 1.34 - - - 0.97 0.07 0.81 - - - - - - - - -2.46 - - - -1.03 - 1.36 1.77 0.42 2.29 - 2.35 2.74 - - - -
- - 2.57 2.38 - 0.04 -0.13 - -1.92 - - - 0.91 - - - 2.05 -0.2 - - - 1.61 - -1.87 0.12 0.51 1.34 - - - 0.97 0.07 0.81 - - - - - - - - -2.46 - - - -1.03 - 1.36 1.77 0.42 2.29 - 2.35 2.74 - - - -
-0.19 -0.82 -1.29 -7.27 -8.18 - -9.3 -10.8 - - - - -1.47 -2.11 -2.32 -2.05 1.2 -1.61 -0.67 -0.64 -0.56 0.17 0.37 1.53 1.89 3.94 -1.77 -0.9 -0.48 -3.0 -3.18 -2.73 -1.15 -1.69 0.42 -1.76 -3.24 -3.13 -1.97 -1.08 -1.81 -1.93 -2.5 -3.15 -2.46 -2.39 -0.1 1.15 2.02 -0.27 -0.77 -0.87 -0.72 3.29 -6.91 -9.89 -11.26 -2.94
-4.57 -3.88 -2.33 -6.69 -6.47 - - - -12.48 - - - -4.3 -6.56 -8.97 -6.59 -0.1 -2.42 -4.06 -2.76 -1.66 -0.89 -2.59 -1.7 -0.99 0.99 -2.62 -1.43 0.48 -1.34 -2.73 -2.95 0.21 -2.35 2.22 0.1 -0.56 -0.34 0.47 0.73 0.48 0.29 0.23 -0.57 -0.39 -1.96 -3.26 2.67 2.32 1.97 2.38 -3.42 -2.56 3.26 -2.63 -1.73 -0.77 0.41
-4.22 -4.61 -2.65 1.68 -3.12 -2.92 -2.03 -2.91 -3.69 -3.05 -3.11 -2.87 -5.63 -1.64 -5.14 -2.89 -1.9 -2.25 -2.28 -3.5 -6.11 3.4 -6.61 -5.01 -4.49 2.11 0.86 - -4.13 - -4.64 -5.89 -2.79 - -1.17 -1.67 -2.52 -2.35 -1.47 -0.55 -2.06 -1.58 -1.22 - -2.22 -1.06 -7.04 3.92 1.57 -4.55 -3.3 -5.98 0.37 3.2 -0.03 -5.32 - 0.61
0.98 -0.15 0.34 -2.18 - - - -7.93 -9.69 -6.33 -6.53 -9.02 0.06 -0.32 -2.86 -2.81 0.23 -0.06 0.37 0.14 0.74 -1.14 -0.34 1.48 2.04 2.27 1.02 -0.04 1.76 0.03 -0.73 0.62 0.85 -2.33 -0.78 -1.57 -1.93 -3.74 - -3.4 -4.46 -3.15 -2.44 -2.42 -2.09 0.28 -0.31 0.65 0.48 -1.11 0.27 0.39 -0.85 -0.12 1.45 -0.28 2.35 -0.79
-4.1 0.46 -4.13 0.49 -3.06 -0.58 0.2 2.25 0.59 -0.94 -0.74 -0.73 -6.29 -0.92 -2.19 -0.33 -1.72 -2.23 -1.57 3.52 -0.87 1.87 -0.66 -0.72 0.95 0.6 1.01 -3.2 -0.3 -2.6 -1.22 -1.46 -0.73 -1.53 -0.7 -2.37 -2.72 -2.86 -3.88 -4.82 -6.46 -3.82 -2.93 -3.84 -4.72 0.77 -3.61 2.72 -0.13 -6.66 -5.28 -3.41 -2.45 1.76 0.52 -0.76 -3.27 -0.08
-0.3 0.92 1.14 -0.26 -1.99 -2.68 0.03 -0.67 -0.08 -1.67 -1.7 -1.35 0.41 1.14 -0.0 0.37 -4.56 0.66 0.22 0.52 -2.34 0.1 -2.95 -2.23 -2.24 -3.84 -0.25 -2.44 -2.83 -2.93 -3.2 -2.87 -2.84 1.7 1.5 1.42 -2.64 -1.0 -2.56 -1.52 -0.82 -0.56 -1.98 -1.11 0.99 1.23 -1.75 0.88 1.06 -3.35 -0.63 0.83 0.86 1.8 -2.68 -0.47 -1.96 2.38
-0.96 -0.18 0.9 -2.35 -2.6 -2.51 -2.82 -2.25 -2.31 -2.66 -2.77 -2.64 -0.04 -0.0 -1.28 -1.13 0.75 1.68 0.15 0.24 1.05 -0.76 0.87 0.89 0.93 1.08 0.11 0.83 1.23 0.87 0.41 0.46 0.59 0.27 -0.48 -1.87 -3.19 -2.33 -2.57 -3.18 -2.26 -2.21 -3.89 -3.36 -1.49 -0.53 1.39 -0.4 -0.73 1.13 -0.2 0.31 0.42 -0.83 1.33 1.25 -0.25 0.34
- 1.14 - 2.37 - - 0.93 - - - - - - - - - - 0.06 - - 2.05 - - - -0.72 - - 1.58 -0.73 3.88 - -1.15 -0.64 - - - - - - - - -1.68 - - - 3.04 - 2.04 1.73 - 1.63 - 1.25 1.05 - - - -
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Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.