Heatmap: Cluster_162 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	Aerial tissue - Light - ZT1	Aerial tissue - Light - ZT3	Aerial tissue - Light - ZT5	Aerial tissue - Light - ZT7	Aerial tissue - Light - ZT9	Aerial tissue - Light - ZT11	Aerial tissue - Dark - ZT1	Aerial tissue - Dark - ZT3	Aerial tissue - Dark - ZT5	Aerial tissue - Dark - ZT7	Aerial tissue - Dark - ZT9	Aerial tissue - Dark - ZT11	Roots	Root elongation and differentiation zone	Root meristematic zone	Aerial roots and rhizophores	Shoot tips	Microphyll	Strobili	Shoot apical meristem - AC	Shoot apical meristem - Core	Shoot apical meristem - P1	Stem - Top	Stem - Bottom	Whole plant	Aerial tissue - Stress - Dark	Aerial tissue - Stress - High light	Aerial tissue - Stress - Cont	Aerial tissue - Stress - 37C 1h	Aerial tissue - Stress - 37C 3h	Aerial tissue - Stress - 4C 1h	Aerial tissue - Stress - 4C 3h
Smo126179	-2.36	-0.1	2.02	1.55	-2.24	0.94	-0.48	-1.41	-	1.33	2.54	0.86	-	-	-	-	1.4	-1.59	-2.24	-	-7.28	-	-0.57	-	-	-	2.44	-9.97	-0.28	-	-	-1.33
Smo138345	-	-	-	-	-	-	0.8	2.23	-	-	-	-	0.8	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.17	-	-	3.33	2.26
Smo22075	-1.9	-0.43	0.13	-0.69	-0.77	0.81	1.71	0.81	-0.63	0.05	-0.48	0.23	-1.98	-3.23	-1.64	-1.26	-0.03	-0.19	1.8	-	-	-	-0.45	-0.77	1.59	-1.08	0.48	0.68	0.36	0.8	-1.37	-0.54
Smo2318	-	-	-	-	-	-	-	3.51	-	-	-	-	-	-	-	-	-	-	4.36	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo37481	-	-	-	-	-	-	3.2	1.94	-	-	-	-	-	-	-	-	-	-	3.84	-	-	-	-	-	-	-	-	-	2.21	-	-	-
Smo402021	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo402749	-1.08	-1.57	-	-	-	-0.3	1.08	1.12	0.33	-0.69	2.14	0.12	-	-	-1.35	-1.53	0.75	-	2.11	-	-	-	-	0.6	2.13	-0.35	1.05	-	0.96	-0.04	-1.64	-
Smo402810	0.01	0.67	-0.29	0.74	0.18	0.26	-0.49	0.16	0.73	-0.16	1.3	0.56	-1.81	0.9	0.81	-0.27	-1.64	0.44	-0.45	0.59	-	-3.03	-2.45	-1.97	-1.1	0.05	-0.34	-0.77	-1.83	-1.21	0.71	0.88
Smo403317	-1.32	-0.33	-	-	-	-	1.68	-0.03	-0.26	-	-	-	3.39	-	-	-0.01	0.75	0.2	-	-	-	-	1.68	0.72	-	-	-	2.06	-	0.72	-0.29	-
Smo403420	-0.83	-1.04	-0.81	-0.17	-1.79	-0.56	0.44	0.42	0.15	1.21	0.37	-0.38	-1.84	-2.43	-0.55	-1.02	-0.01	0.26	0.02	-	-	-	-0.17	-1.57	1.69	0.78	0.96	1.97	-0.06	0.48	-0.53	-1.29
Smo404511	0.9	-	0.52	2.1	-0.63	0.43	-0.75	1.09	-0.71	0.93	1.26	2.16	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2.34	2.39	-	-	-	-
Smo405023	0.84	-	-	-	-	-	-	0.13	-	-	-	1.46	1.66	-	0.82	-	-	-	1.53	-	-	-	0.48	-	-	-	-	2.77	3.07	0.96	-	-
Smo405191	0.91	1.12	0.96	-	-	1.26	3.22	-	0.99	-	-	1.11	1.45	-	-	-	-	-	1.31	2.31	-	-	-	-	-	-	-	-	-	-	-	-
Smo406648	-	1.46	0.75	-	-	-	-	-	-	-	3.53	-	-	-1.83	-	-	-	-	1.14	-	-	-	-	-	3.19	2.13	-	-	-	-	-	-
Smo406928	-1.26	-	-	-1.46	-	-	-	1.67	-	-	1.78	-1.29	0.84	2.46	1.65	1.19	-	-0.69	2.38	0.87	-	-	-0.47	-	1.11	-	-	-	-1.48	-	-0.75	-
Smo406951	-2.59	-0.61	-1.21	0.73	-2.33	0.21	0.29	0.77	-0.88	-2.64	-	-2.5	-1.25	-2.47	-1.5	0.42	-0.68	0.05	2.68	-	-0.05	-	0.65	0.76	-	0.62	0.83	1.43	0.73	-2.38	-1.42	0.11
Smo407906	0.26	-	-	-	-	1.25	-	-	-	-	4.08	0.97	-	1.11	-	1.39	-	-	2.25	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo408628	-0.72	0.6	0.39	0.3	-	-	1.67	-	-	-	1.89	-	-	-	-	-	0.84	-	-	-	-	-	1.98	0.77	-	-	2.03	-	1.85	1.85	0.81	-
Smo409472	2.28	-	-	2.07	-	-	2.74	-	-	3.16	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.89	1.86	-
Smo410362	0.33	-0.36	-	0.76	-	-0.12	1.23	2.54	-	-	1.24	1.24	-	-	-	0.29	-0.38	0.46	1.6	-	-	-	-	-	-	0.83	1.24	-	0.31	0.81	-	-0.13
Smo410418	-0.63	-	-	1.54	0.36	-	2.76	0.96	0.2	0.05	-	-2.31	-	-	1.0	-	0.34	-	1.34	-	-	-	-	-	-	1.42	-	-	1.92	1.93	-	-
Smo410977	-	-	1.29	1.4	-	-	0.98	-0.17	0.04	-	1.79	1.58	1.65	-	-	-	0.18	-	0.18	-	-	-	0.13	1.27	-	1.13	-	-	0.03	0.19	1.73	-
Smo411109	-	-	-	-	-	-	-	-	-	-	-	3.3	3.53	-	-	-	-	-	3.41	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo411349	0.72	-	0.69	2.73	-	1.22	-	2.4	-	-0.31	2.25	1.84	-	-	-	0.11	-	-	-	-	-	-	-	-	-	-	1.27	-	-	-	-	0.89
Smo413265	-	-	-	-	-	-	3.99	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.01	-	-	-	-	-	-	-	-	-
Smo414015	-	-	-	-	-	-	-	3.34	1.66	-	-	-	-	2.97	-	-	-	3.44	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo414839	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo415106	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo415763	0.62	-	-	-	-	1.83	-	-	-	-4.14	3.0	-	-	1.67	-	2.73	0.95	2.38	-	-	-	-	0.9	-	-	-	-	-	-	-	-	-9.15
Smo415908	0.77	1.41	-	1.61	-	-	2.08	2.42	-	2.41	2.26	2.28	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo416190	-	-	-	-	-	-	3.36	-	-	-	-	-	-	-	-	-	-	-	3.49	-	-	-	-	-	-	-	-	-	-	-	-	3.39
Smo416239	-	-	-	-	-	-	4.02	-	-	-	-	-	3.98	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo416310	-	-	1.86	2.56	-	-	-	3.98	1.89	-	-	-	-	-	1.6	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo416311	-	1.31	-	-	-	-0.07	-0.14	1.93	-0.48	-0.53	2.79	0.69	2.25	-	1.04	0.11	-	-	-	-	-	-	-0.25	-	-	-	-	2.1	-	-0.17	-	-
Smo416318	-	-	-	-	-	-	-	4.24	-	-	-	3.72	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo416918	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo417140	-	-	-	-	-	-	4.26	-	-	-	-	-	-	-	3.68	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo417265	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo417966	-	-	-	0.13	-	0.7	-	1.34	-	-	0.48	2.55	-	0.55	-0.05	-	0.65	1.32	0.64	-	-	-	1.79	-	-	-	1.86	-	1.53	-	-	0.55
Smo418243	-	-	-	-	-	-	-	2.41	-	-	-	-	-	-	-	-	-	3.06	3.56	-	-	-	2.72	-	-	-	-	-	-	-	-	-
Smo418852	-	-	-	-	-	-	-	3.78	-	-	-	-	-	-	-	-	-	1.81	3.89	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo419130	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo419407	1.69	0.83	2.68	-	-	-	-	-	-	0.67	2.62	0.85	-	-	0.35	-	-	-	-	-	-	-	-	-	-	-	3.29	-	-	-	-	-
Smo419576	2.21	-	-	-	-	-	-	-	-	-	3.06	3.27	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.23
Smo419750	0.6	-	-	0.58	-	-	-0.91	0.93	-0.89	-	-	2.38	-0.64	1.43	-	-	-0.67	-0.13	-0.8	-	-	-	-0.66	-0.86	-	1.2	2.86	-	0.76	0.22	0.3	-0.89
Smo420046	-	-	-	-	-	-	-	-	-	-	-	3.95	-	-	-	-	-	-	4.05	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo420333	-	-	-	-	-	-	-	-	-	-	-	4.25	2.79	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2.6	-	-	-
Smo420547	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo420548	-	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo422833	-	-	-	-	-	1.27	1.08	1.92	-	-	3.3	-	-	3.01	0.53	-	1.19	-	-	-	-	-	-	-	-	-	-	-	1.04	-	-	-
Smo423058	-	-	-	-	-	0.39	0.16	-	1.95	-	-	-	0.42	-	1.32	-	-	1.55	-	-	-	-	-	-	-	-	2.56	3.57	-	-	0.27	-
Smo423297	0.41	-	-	-	-	-	1.76	-	-	-	3.48	-	-	-	1.82	-	-	-	-	-	-	-	1.88	-	-	3.16	-	-	-	-	-	-
Smo423758	-2.0	-0.25	-	-	-0.99	0.62	1.43	0.56	0.96	0.88	1.04	0.45	-	-	-	-0.87	0.65	-0.99	2.44	-	-	-	-0.88	-1.09	-	-0.03	1.37	-	0.53	0.57	0.95	-
Smo423793	-	-	-	-	-	-	-	2.69	1.91	1.59	-	-	2.03	-	-	-	-	-	2.88	-	-	-	1.83	-	-	-	-	-	-	1.91	-	-
Smo424173	-	-	-	-	-	-	-	4.54	-	-	-	-	-	-	3.14	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo424599	-	-	-	-1.51	-	-	1.5	2.11	1.71	-0.02	-0.07	-	-	-	0.79	-	-	-	-	-	-	-	-	-	-	-	1.77	3.82	-	-	-	-
Smo424998	-	-	-	-	-	-	2.92	2.8	-	-	-	-	-	-	-	-	-	4.13	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo425232	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo425419	0.36	0.71	-	-0.19	-	-	-0.5	-	-0.57	-	1.96	1.76	0.4	1.23	1.87	0.57	-	-	2.16	-	0.6	-	-0.6	-	-	0.65	0.97	-	-	-	-0.76	-
Smo425585	0.68	1.86	-	-	-	-	0.99	-	1.74	-	-	3.25	-	1.98	2.49	1.24	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo425677	-	-0.91	-	0.24	-	0.37	-	-	-	-	1.7	-	-0.71	-	0.81	-0.7	1.25	1.28	2.31	-	-	-	-0.71	-	2.79	0.31	0.52	-	0.77	-0.82	-	-0.88
Smo426492	-	0.61	1.75	-0.26	-	-	1.66	-0.6	-0.59	0.99	2.35	-0.42	-	-	-0.92	-	-	-	1.36	-	-	-	-0.27	-	1.86	-	-	2.47	-0.2	-	-	-
Smo427106	0.29	-	-	-	-	-	-	0.8	1.87	-	-	2.68	1.05	-	0.8	1.04	-	-	-	-	-	-	-	0.97	3.07	-	-	-	1.46	-	-	-
Smo427826	1.7	-	-	2.68	-	-	-	4.48	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo427973	-	-	-	-	-	-	-	3.7	-	-	-	-	-	-	-	4.25	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo428484	0.12	1.02	-0.54	-0.51	1.02	-	-1.46	-	0.14	-0.61	2.12	0.18	0.97	-	-0.48	-1.17	-1.2	-	0.52	-	-	-	-	-0.39	0.7	0.29	-	2.77	-0.12	-	-0.35	-0.41
Smo428669	-0.41	-1.03	-	0.25	1.35	2.76	0.04	-0.12	0.1	0.93	1.26	0.66	-	-	0.06	-	-0.67	-	0.22	-	-	-	-	-	2.24	-	-	1.41	-0.92	-0.77	-	-
Smo429114	-0.05	-	-	-	-	-	1.27	3.91	-	-	-	-	-	1.36	-	-	-	1.53	1.44	-	-	-	-	-	-	-	-	-	-	-	2.43	-
Smo430071	-1.54	0.28	1.19	-0.55	-0.02	0.65	1.92	1.14	0.88	0.68	0.06	1.2	-3.59	-	-	-3.46	-1.09	-0.82	2.08	-	-	-	-3.81	-2.24	-1.78	0.54	0.28	-0.6	-1.24	-0.3	-0.11	-0.55
Smo430327	0.65	-0.04	-	1.39	-27.64	-0.57	0.42	3.08	0.59	-0.2	2.79	2.03	-	-0.05	-1.96	-	-	-21.19	0.35	-	-24.33	-	-	-	-1.05	-	-	-	-	-17.29	-	-
Smo431041	-	-	0.75	0.59	-	-	-	1.83	-	-	-	-	-	-	-	-	-	1.08	2.74	-	-	-	-	-	-	-	2.59	3.39	-	-	-	-
Smo431628	-	-	-	-	-	-	-	-	-	-	5.0	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo432084	0.19	0.57	-1.72	0.79	-2.39	0.32	-1.55	1.39	1.63	0.6	1.68	0.16	-2.16	-0.92	-1.41	-3.13	0.07	-4.09	-0.47	-0.12	-1.53	-12.8	0.54	0.45	-3.49	-5.43	0.73	0.76	-0.29	0.12	-0.54	-0.3
Smo432380	-0.53	2.46	-	1.57	-	2.44	1.28	-	-	0.64	3.21	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2.05	-	-	-	-	-	-
Smo432586	-0.38	-	-	-	-1.88	-	1.79	1.43	0.51	1.24	0.38	0.0	-	-	-0.63	0.15	-	0.53	2.43	-1.05	-	-	-0.05	-1.03	-	1.81	-	-	-1.23	1.25	-0.07	-0.07
Smo72285	-	-	-	-	-	-	2.46	3.34	-	-	-	-	-	-	-	-	-	3.21	-	2.83	-	-	-	-	-	-	-	-	-	-	-	-
Smo72717	-	-	-	-	-	-	2.24	-	-	-	-	2.31	-	-	-	-	0.97	2.78	0.96	-	-	-	1.92	2.52	-	-	-	-	-	-	-	1.02
Smo75677	0.96	0.87	-0.33	-0.47	-	-	-0.13	2.2	-	1.58	-0.2	-	-	-0.21	0.09	-	-	-	-	-	-	-	-	-	1.88	-	1.35	3.2	-	-	-	-
Smo8334	1.07	-	2.15	-	-	-	-	-	-	-	-	-	-0.68	-	0.85	-	-	-	1.14	-	-	-	-	-	-	-	2.79	3.8	-	-	-	-
Smo88191	-0.0	0.79	-	2.39	-	-	2.04	0.27	-0.92	-	-	-	-	-	0.2	-	-	-	2.47	-	-	-	1.35	-	-	-	-	-	-	3.16	-	-
Smo93435	-	-	-	-	2.82	3.02	-	-	-	-	3.49	-	2.49	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Smo97115	0.44	-1.39	1.89	1.27	-0.13	1.2	0.7	2.15	-1.27	0.77	2.64	-1.3	-	1.4	-1.88	-	-	-	-	-	0.15	-	-	-	-	-	-	1.05	-	-	-	-

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.