Heatmap: Cluster_24 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
- - - - - - - - - - - - - - - - - - 2.64 - - - - - 4.5 - - - - 1.66 - -
- - - - - - - - - - - - - - - - - - 1.57 - - - - - 4.68 - - - 1.74 - - -
- - - - - - - - - - - - - - - 0.61 - - -0.01 - - - - -0.08 4.42 2.61 - - - 0.09 - -
-2.3 0.21 - - -1.93 - -2.83 -0.91 - -3.4 - -5.83 -3.76 -2.87 - - -5.37 2.55 3.33 - - - -5.35 -5.42 3.65 -0.35 - - - -3.56 - -5.66
0.14 0.49 -0.04 0.2 -0.14 -0.21 -0.59 -0.74 -0.38 -0.55 -0.49 -0.35 0.42 0.55 -0.76 0.25 -0.07 -0.14 0.9 -1.35 0.68 -0.93 -0.45 -0.62 1.27 1.1 -0.01 -0.22 -0.38 -0.2 -1.01 -0.7
0.25 0.06 -0.55 -0.43 -0.54 -0.63 -1.09 -1.48 -1.05 -1.19 -0.9 -1.04 -0.85 1.14 -1.7 -0.13 0.12 0.21 1.84 -3.67 0.68 -4.76 -0.08 -0.05 1.8 -0.18 -0.04 -0.32 0.27 0.23 0.44 -0.13
- - 1.3 - - - 1.76 - - - 1.1 - - - - - - - - - - - 1.11 1.18 3.75 - - - 1.17 0.63 0.62 -0.41
- - - - - - - - - - - - 3.24 - - - - - -0.29 - - - - - 4.38 - - - -0.11 - - -
-0.44 -0.37 -0.08 -0.05 -0.02 0.12 0.15 -0.21 0.14 -0.3 -0.8 -0.9 0.75 0.17 -1.68 0.28 0.17 -0.79 1.59 -2.97 0.59 -2.07 -0.56 -0.96 1.15 -0.45 0.28 0.23 -0.02 0.09 0.23 -0.25
-2.9 - - - - -4.37 -3.29 -4.25 -2.46 -3.22 -5.15 -2.83 - - - -3.77 -2.93 -1.59 1.93 -3.39 - - -0.64 1.16 4.28 -1.16 - -9.39 0.84 0.53 -1.4 -1.16
-3.5 - -2.03 -2.04 -3.09 -2.09 -0.41 0.54 -0.26 -0.15 -2.15 -0.02 - - 0.71 -0.42 -1.44 0.18 -2.51 -0.11 - -1.3 0.22 -0.74 3.32 0.69 1.5 -0.27 0.33 -1.6 -0.03 -0.16
- 2.51 - 1.57 - - - - - - - - - - - - - - - - -16.75 - - - 4.25 - - - - 2.12 - -
- - - - 1.84 - - - - - - - - - 1.07 - 0.65 - 0.65 - - - - 0.7 3.61 - - - 1.67 0.69 - 2.2
-1.27 -1.11 -1.4 -0.91 -2.4 -1.07 -1.77 -1.12 -1.9 -1.64 -1.74 -1.08 -0.81 -1.15 -1.15 -0.22 -0.13 -0.56 2.52 0.85 0.12 1.1 -0.58 -0.43 2.42 -0.07 0.24 0.48 -0.64 -0.34 -0.79 -1.05
-1.15 - - - -0.2 - -1.82 -2.08 -2.02 - - -1.9 - -1.77 - 0.0 0.56 -1.36 1.2 - - - 1.25 1.78 3.62 - -0.26 - 0.79 1.41 - -0.25
-1.18 1.37 -1.35 0.3 -0.92 - - -0.38 -1.37 1.98 1.05 - -0.8 -0.79 - 0.3 0.13 - 3.06 - - - - - - 1.14 - - 1.61 0.65 0.03 -
-0.09 -0.2 0.47 0.2 -0.07 0.56 -0.24 0.07 -0.9 -1.58 -1.69 -0.18 -0.28 -0.16 0.24 0.64 -1.17 -0.1 2.04 - 0.49 - -0.21 0.17 1.97 -1.44 0.18 -0.23 -0.8 -1.14 -1.46 -2.01
- - - - - - 0.46 - - - - - - - - - 0.62 2.25 1.18 - - - 1.25 0.11 3.63 - - - -0.54 0.6 1.56 0.08
-1.03 -0.41 - -18.83 - -7.13 - 0.31 - - - -23.0 2.06 -13.47 -2.0 - - - - - - -0.45 - - 4.51 0.66 - - - - - -
- - - -0.02 - 0.55 - 0.2 - 0.24 - - 2.27 - -0.22 0.7 0.67 1.89 2.87 - - - 0.49 - 2.55 - - - - - - -
-1.29 -3.83 -1.01 -2.38 -2.08 0.02 0.13 -0.4 -0.07 -0.47 -2.65 -0.94 -1.86 -3.84 -1.99 -1.8 -1.92 -1.26 2.87 - - 1.89 -0.52 -0.58 1.73 0.26 1.29 1.43 -0.2 -0.41 -3.62 -3.69
- - - - - - - - - - - - - - - - -0.41 - 1.59 - - - 0.64 -0.37 4.65 - - - - - - -0.43
-3.36 - - -0.56 - -0.38 -0.87 -1.35 -1.51 -2.9 -0.09 - 1.51 -0.35 2.93 0.77 -0.51 0.78 1.84 - 2.28 - -2.29 - - - -0.42 1.27 -1.53 -0.84 - -
- - - - - - - - - - - - 0.31 - - 0.5 1.26 - 1.77 - - - 1.34 1.12 4.14 - - - - 0.22 - -
0.22 - - - - 0.07 - - - - - - - - 1.05 0.55 - 0.14 0.24 - - - - - 4.58 - - - - - - -
- -0.77 2.02 1.67 - - - 0.88 - - 0.27 - - 1.0 - - - 1.39 - - - - - 0.4 3.37 - - - - 0.49 1.8 -
-2.55 -1.68 -0.15 -1.4 -1.59 -1.06 -1.12 -0.9 -0.95 -0.96 -2.0 -1.11 -0.51 - -4.01 -1.07 -0.72 -0.57 2.78 -3.42 -0.65 - 0.42 -0.15 2.74 -0.68 1.07 0.74 -0.44 -0.16 -0.29 -0.36
- - - 2.21 - - - - - - - - - - - - - - - - - - - - 4.77 - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - 5.0 - - - - - - -
- - - - - - - - - - 1.13 - 1.24 0.81 - 1.35 - - 2.66 - - - - 1.02 3.15 1.98 - - - - 1.0 -
- - - - - - - - - - - - - - 0.67 - - 2.76 2.44 - - - - - 4.19 - - - - - - -
0.3 2.06 - -1.21 - - -0.84 -1.1 - 0.3 - -0.92 1.47 - - 2.14 - - - - 1.6 - 0.46 0.93 3.12 - - - - - -0.71 -0.76
-0.8 - - - - - - - - 0.42 - - - - 2.45 - - - 3.11 - - - 0.7 1.92 2.86 - - - - - 1.73 -
- - - - - - - - - - - - 0.44 - - - - - 4.43 - - - - - 3.18 - - - - - - -
-0.67 -0.8 -1.33 -0.53 -1.41 0.4 0.68 0.31 -0.66 0.65 -0.53 -0.69 -0.61 -2.98 -1.17 -1.18 -2.32 -0.03 2.11 -0.61 -1.95 - -0.37 0.32 2.18 0.98 0.79 0.85 -1.06 -0.56 -2.06 -2.98
- - - - - - - -0.59 - 2.02 - - 0.89 - - 1.04 0.8 0.72 3.06 - - - 1.33 - 2.76 - - - - - -0.3 0.63
-0.39 -0.4 - -1.04 - -1.71 -0.36 -1.17 -1.0 -0.53 -0.35 -0.85 -1.58 -1.58 0.79 - 0.41 0.87 3.29 -0.71 - - 0.89 0.22 2.29 - - - -0.23 -0.12 - -1.81
- - - - - - - - - - - - - - - - - - 2.17 - - - - - 4.78 - - - - - - -
-2.23 - - - - 0.24 0.74 -1.14 0.46 -0.99 - -0.82 - - - - - -0.6 3.04 - - - - - 2.08 0.38 2.07 2.5 -0.74 0.25 - -
-0.42 -0.59 -0.97 -0.75 -0.84 0.08 -0.16 -0.26 -0.29 -0.25 -0.36 -0.26 -0.53 -1.04 -0.65 -0.81 -0.96 -0.46 2.15 0.12 0.81 0.38 -0.76 0.01 1.43 0.57 0.39 0.3 -0.66 -0.51 -0.98 -0.98
-1.35 -1.35 -0.02 -0.94 -1.74 -0.39 -0.76 -2.28 -1.4 -3.21 -1.18 -1.28 -2.15 -0.88 -0.15 -3.59 1.03 0.7 2.48 - -0.33 - 0.54 -0.46 2.58 -0.56 -0.25 -0.56 0.59 0.35 -0.77 -0.0
-1.56 - - - - - - - - - - - -0.24 - -1.12 -0.25 - - 1.59 - - - - - 4.59 0.69 - - - -0.39 - -
-0.45 -0.28 -0.22 -0.35 -1.1 -0.82 -1.67 -0.56 -0.71 0.63 -2.08 -1.89 0.42 0.73 0.36 0.94 -1.63 -1.82 2.87 -0.99 -2.22 1.25 -3.43 -2.86 1.56 -0.47 0.1 -0.29 -2.51 -2.47 -1.7 -1.26
-2.13 - - - - - -1.34 -1.6 -1.28 - -0.49 -1.32 - 0.3 -1.19 - -0.03 1.58 2.94 - - - -0.1 -1.06 2.75 - - 2.04 0.78 0.85 -1.19 -
-1.51 -0.69 -1.59 -0.81 -2.44 -0.24 0.18 -1.09 -1.99 -2.82 -2.79 -0.31 -0.71 -0.78 1.78 -0.83 -1.07 0.55 2.6 - - - -0.06 0.16 2.61 -2.48 0.41 0.74 -0.69 -1.1 -2.47 -1.53
-0.69 - - - - - - 0.05 - - - - - - - - - - - - - - 1.53 0.44 4.27 - 2.77 - - - - -
-1.73 0.15 -1.64 0.17 - -1.16 - - - - -1.51 1.19 1.96 0.74 -0.53 0.61 -0.06 1.73 2.72 - - - -0.24 - 1.84 - - - -0.18 - 0.78 -1.29
- - - - - - - - 1.97 - - - - - - - - 1.72 3.29 - - - 2.13 - 3.41 - - - - - - -
-1.34 -1.9 -0.15 0.06 0.62 -0.45 -0.19 -0.09 0.46 -0.53 -0.54 0.05 -3.52 -3.95 0.13 -0.49 -0.01 0.01 2.2 - - -0.14 -1.33 -1.03 2.31 0.15 -0.93 - 0.17 -0.09 0.19 0.47
- - - - - - - - - -3.11 -2.87 - -0.24 - -2.41 0.09 1.17 -1.03 2.15 -0.02 0.61 -1.15 0.48 0.13 3.49 -0.64 0.17 -0.47 -1.19 0.63 -0.14 -1.2
- - - - - - - - - - - - - - - 0.1 1.53 - - - - - - 0.88 4.03 2.63 1.87 - - - - -
-0.03 - - - - - - - - 0.11 - - - - 2.43 0.27 - - 0.11 - - - - - 3.92 1.11 - 2.33 - - - -
- - - - - - - - - - - - - - 2.66 - - - 2.14 - - - - - 4.13 1.89 - - - - - -
-1.26 -0.79 -1.49 -0.87 -1.97 0.11 0.07 -0.34 0.61 -0.51 0.22 -0.32 -0.83 -0.22 -0.88 -0.74 -0.72 0.28 1.58 0.09 0.27 0.29 0.57 0.49 1.56 0.75 0.8 -2.46 -0.38 -0.68 -1.28 -0.73
-0.03 -0.05 -0.46 0.01 -1.38 -0.42 -0.2 -0.58 -0.18 -0.64 -2.09 -0.2 0.07 0.2 -1.3 0.71 0.65 0.91 1.63 -4.66 -2.64 -2.6 0.57 0.84 1.8 -0.53 -1.28 -1.59 0.19 -0.07 -0.32 -0.34
- -1.74 - - - - 0.68 - -1.61 -0.85 0.85 - - - - - -0.1 -0.01 0.84 - - - -0.13 0.58 2.96 -0.52 0.89 1.71 0.89 0.32 1.63 0.57
-1.99 -1.01 0.1 -0.35 -0.27 -0.01 0.4 -0.14 0.2 -0.15 -1.54 -2.03 0.06 -2.48 -3.91 -1.95 0.22 -0.1 1.49 -0.64 -0.75 - 0.31 0.42 1.53 0.88 0.91 0.78 -0.32 -0.42 -0.03 0.67
-1.81 -2.82 -3.26 -1.06 -2.25 -1.53 -0.8 -0.93 -0.49 -0.93 -0.66 -1.14 -1.81 -4.54 0.16 -1.04 -1.04 -1.15 2.21 -2.81 -3.12 0.53 0.02 -0.11 2.19 1.15 0.56 1.86 0.24 0.11 -0.17 -0.31
- - - - - - - - - - - - - - - - - - 2.03 - - - - - 4.8 - - - - - - -
- - - 1.02 1.13 - - 1.78 - - - - - 1.02 - 1.34 - - 1.03 - - - 2.17 - 3.14 - 1.27 - - - 1.02 -
-2.78 -1.57 -1.62 -0.2 0.46 0.77 0.8 0.48 0.23 -0.44 -0.94 -1.77 0.32 -3.41 -4.01 -0.84 -0.16 -0.06 1.41 -5.52 -0.26 - 0.36 0.38 0.93 0.34 0.8 0.48 -0.04 -0.09 0.47 0.91
-2.61 - 0.54 -0.48 - - -1.12 0.49 0.23 1.66 -1.72 - -1.92 - - -1.01 -1.54 - 3.25 - - - -0.82 -2.0 3.4 - - - - - -0.03 -2.17
-1.04 -0.58 -1.02 -0.95 -0.36 -0.8 -0.23 -0.64 -0.33 -0.78 -1.59 -0.97 0.41 0.2 1.24 0.33 -0.1 0.12 1.99 -0.81 -0.25 -2.75 -0.07 0.08 1.49 0.54 -1.2 0.21 -0.47 0.24 -0.89 -0.24
-0.96 - - - - 0.07 - - - - - 0.95 - - - - 0.06 0.76 3.06 - - - - 1.7 2.99 - - - 0.12 1.1 - 1.6
- - - 0.07 -1.04 - - - - -1.18 -0.6 - -0.83 0.76 1.51 -0.68 0.08 -0.22 1.82 - 1.74 - - - 2.88 1.29 0.55 1.35 - -0.95 -0.99 -
- - - - - - - - - - - - - - - - - 2.39 - - - - - - 4.57 - - - - - - 1.63
- - - - - - - 0.24 - - - 0.31 1.68 - -0.18 1.77 - - 2.54 - - - - - 3.35 - 1.75 - 0.42 - - 0.44
-1.42 - - - - - 0.51 - - - - - 1.04 0.7 2.47 - -0.69 -0.68 2.64 - 0.94 - - -0.76 2.11 - - 1.84 -0.66 -0.68 -0.69 0.25
- -0.36 2.43 - - - - 1.29 - - 0.67 - - 1.41 - - - - - - - - - 0.8 3.78 - - - - 0.9 0.87 -
- - - - - 0.16 - 0.68 - - - -0.03 - 2.0 0.39 - - - 3.73 - - - 1.19 - 2.9 - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - 5.0 - - - - - - -
-27.33 - - - - - - - - - - - - - - - - - 1.75 - - - 2.18 0.88 4.48 - - - - - - -
-3.29 - -0.61 -2.28 - -0.13 -0.36 - - -0.06 - 0.12 - - - -1.45 -0.69 -0.09 2.7 - - - 0.42 - 3.08 1.27 0.45 1.32 -0.88 -0.38 0.54 -
- - - - - - 0.39 - - - - - 0.61 - - - 0.46 - 4.04 - - - - - 3.32 - - - 0.49 - - -
-1.18 - - -0.03 - - - - - - - - - - - 0.46 1.3 2.1 2.62 - - - 0.44 0.23 3.16 - - - 0.22 0.32 0.29 0.24
- - - - - - 1.87 - - 1.7 - - - - -0.28 - 0.28 2.34 1.87 - - - - 1.33 3.23 - - - 0.26 - 0.32 -
- - - - - - - - - - - - - - - - - - - - - - - - 5.0 - - - - - - -
- - - - - - - - - - - - - - - 0.01 - 1.36 1.36 - - - - 0.98 4.11 - 2.33 - - - - 0.67
-0.89 - - - - - 2.3 - - - - - - - 0.14 - - - - 1.51 - - - - 4.01 2.37 - - - 0.35 - -
- - - - - - - - - - - - - 1.0 1.12 2.29 - - 0.97 - - - - - 3.93 - 2.53 - - - - -
-1.11 - - - - - - - - - - 0.17 - - - -0.38 0.94 0.83 0.31 - - - - 1.69 3.21 - 2.26 1.62 0.26 0.92 0.33 -
-0.08 0.17 -0.08 0.05 - -2.12 -0.11 -1.48 -1.21 -0.94 -0.76 0.23 - - - -1.84 0.26 -0.75 3.4 -1.95 - - -0.48 - 2.16 - 1.11 0.73 - 0.45 -2.17 -2.23
-1.1 - 0.5 - -16.39 - 0.81 - 0.73 - 0.94 - -15.24 0.74 - - - - 0.46 - - - 0.19 2.34 3.58 - - - - - - 1.83
-2.43 - - -0.62 - 1.97 0.53 - 0.5 -0.3 - -1.02 0.04 - - 0.39 -0.62 0.96 0.22 0.16 - - 0.3 -0.08 3.5 - - - -0.2 -0.26 -0.63 -
-1.74 - - -1.32 - 0.84 -0.91 - - - - - - - - - 1.4 0.55 1.05 - - - -1.0 -0.9 4.07 1.2 - - 0.04 0.68 - -
- - - - - - - - - 0.01 1.24 - - - - - 2.43 2.44 2.81 - - - - - 2.46 - - - 0.09 1.67 0.08 -
- - - - - - - - - - - - - - - - - 1.87 - - - - - - 4.63 - - - 1.84 - - -
- - - - - - - - - - - - - - - - - - 3.65 - - - - - 3.19 - - 3.37 - - - -
-3.09 -0.79 -2.96 - 0.34 -3.64 -0.72 -1.43 -0.88 -0.23 0.1 -1.55 -1.83 -2.53 -0.47 0.83 - -0.11 3.52 - - 0.43 -1.95 -3.0 2.71 -1.61 - - -2.08 -1.49 0.1 -1.17
- -0.93 - -0.78 -0.66 - - 1.58 -0.8 -0.11 - - - - -0.43 -1.01 -0.09 -0.1 3.47 - - - -1.22 -0.19 2.35 - 0.51 1.52 - -1.09 -1.08 -
0.61 - - - - - - - - - - - - - - - - - - - - - - - 4.93 - - - - - - -
- - - - - - - - - - - 1.55 - - 0.08 - - 2.46 0.79 - - - - - 4.26 - - - 0.67 - - -
- - 0.47 1.9 - - 0.71 -0.43 -25.9 -0.39 - - - - - - 0.02 - 2.47 - - - 1.94 - 2.93 - 1.09 - 0.83 -0.1 -0.13 -
- - - - - - - - - - 2.06 - - - - - - - - - - - - - 4.8 - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.