Heatmap: Cluster_4 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
- - - - - - - - - - - - - - - - - - 4.3 - - - - - - 3.07 - - - 1.99 - -
2.11 - - - - - - - - 2.84 - - - - - - - - - - - - - - - 4.36 - - - - - -
- - - - - - - - - - - - 1.15 - 1.25 - - 1.65 3.99 - - - - - - 3.07 - - - - - -
- - - - - - - - - - - - - - 2.43 - - - - - - - 1.89 - - 4.24 - - - - - 2.0
- - -27.91 - - 1.55 - -0.47 -0.42 - - - - - - -1.48 -0.17 0.18 2.55 - - - - - - 3.05 1.54 2.93 -1.76 - - -1.85
- - - - - - - - - 4.44 3.36 - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - 5.0 - - - - - -
- - - - - - - - - 4.22 - - - - - - - - - - - - - - - - - - - 3.75 - -
- - - - - - 1.3 - - - 2.56 1.4 - - - - 1.49 - 1.35 - - - - 1.4 - - - - 1.33 3.39 - -
0.72 -1.87 - - - - - -1.92 - - - -0.98 -2.13 3.5 - -1.09 - - -0.58 - - - -2.32 - - 3.62 0.94 - -1.02 - 0.62 -2.49
-0.76 1.09 - - - 0.82 - 0.99 0.48 1.57 - -0.94 - - - - - - 1.08 - - - -0.96 1.39 - 2.71 - 1.52 1.13 1.46 - 0.07
- - - - - - - - - - - - - - - - - - - - - - - - - 5.0 - - - - - -
- 2.81 - - - - - - - - - - - - - - - - 2.9 - - - - - - 4.13 - - - - - -
- - - - - - - - 1.88 - - - - - - - - - - - - - - - - 3.32 - 4.2 - - - -
- - - - - - - - 1.88 - - - - - - - - - - - - - - - - 3.32 - 4.2 - - - -
- - - - - - - - - - - - 2.09 - - - - - 3.96 - - - - - - 3.05 - - - 1.97 - -
- - - -0.03 - - 0.23 2.82 - 2.14 0.63 - 0.34 - - 0.35 - - 3.52 - - - - - - 1.48 - - - - - -
- - - - - - - - - 5.0 - - - - - - - - - - - - - - - - - - - - - -
- - - 1.01 - - - - - - 1.16 - - - 1.3 - - 0.37 - - - - - - - 2.54 - 3.85 1.31 - 0.34 -
- - - - - - - - - - - - - - - - - - - - - - - - - 4.14 - - 3.84 - - -
-1.84 - - -2.74 0.09 -1.42 - -1.05 -4.06 -3.93 -0.4 -1.76 1.16 2.57 1.19 2.48 -1.75 -0.56 -0.98 - - - -1.69 -1.79 -0.19 2.62 -0.13 - -0.48 -0.58 -0.6 -1.52
- - - - - - - - - 3.77 - - - - - - - - 4.2 - - - - - - - - - - - - -
0.03 - - - - - - - - - - 1.33 - - - - - - - - - - - - - 2.67 2.97 - 3.08 1.58 - 1.49
2.64 - - - - - - - - - - - - - - - - - - - - - - - - 4.69 - - - - - -
-0.41 -1.28 - -0.28 1.27 0.45 0.43 -1.42 0.3 - -0.23 0.03 - - - -2.07 0.06 -2.36 -0.75 - - - -2.42 -2.24 - 1.49 0.66 3.54 -0.85 0.66 -1.4 -1.44
0.3 -0.11 - -0.84 -3.01 0.61 -0.24 -0.42 0.54 -1.34 0.39 0.11 -0.98 -0.91 -2.69 -0.91 -0.64 0.29 -0.37 - - - 0.29 0.3 0.12 2.58 -0.38 0.53 0.68 1.23 -0.72 0.21
- - - - - - - - - - - - - - - - - - - - - - 3.37 - - - - - - 4.44 - -
- - - - - - - - - 3.84 - - - - - - - - - - - - - - - - - - - 4.14 - -
- - - - - - - - - - - - - - - - - - - - - - - - - 5.0 - - - - - -
- - - - - - - - - - - - - 2.53 - - - - - - - - - - - 4.71 - - - - - -
- - - - - - - - 2.86 - - - - - - - - - - - - - - - - 4.63 - - - - - -
-0.22 - 1.74 - - - - 0.74 - 1.06 1.19 - - 1.69 - - - 1.59 1.89 - - - - - - 3.57 - - - - - -
- - - - - - - - - - - - - - 2.42 - - - - - - - - - - 4.23 - - 2.99 - - -
- - 0.97 - - - - - - 0.99 - - 1.64 - - - 1.59 2.33 2.46 - - - - - - 3.51 - - - - - -
- 1.66 - - - - - -17.85 - - 1.2 - - 0.59 - - - - - - - - - 0.36 - 3.94 - - 1.4 - 2.52 -
- -17.48 - -19.07 - - - - - - - - - -7.7 - - - - - - - - - 1.7 - 3.03 - - - 4.11 1.75 -
- - - - - - - - - - - - - 2.86 - - - - - - - - - - - 4.06 - - - 3.02 - -
- - - - - 2.26 - - - - - - - - - - 2.52 2.38 - - - - - - - 3.48 - - - - 2.37 -
- - - - - - - - - - - - - - - - - 3.11 - - - - - - - 4.01 - - 2.87 - - -
- - - - - - - - 0.63 1.89 - - - - - - - - 3.37 - - - 0.67 - - 2.82 - 2.94 - - - -
- - - - - - - - - - - - - - - - - 1.89 - - - - - - - 3.47 - 4.04 - -0.3 -26.0 -26.25
- - - - - - - - - 3.86 - - - - - - - - 4.13 - - - - - - - - - - - - -
- - - - - - - - - 4.42 - - - - - - - - - - - - - - - - - - 3.41 - - -
-13.62 - - - - - - - 1.47 - - - 0.33 1.54 - -0.75 1.73 - - - - - 1.3 0.6 - 3.29 - - 1.98 1.4 -0.3 -
- - - - - 1.74 - - - - - - - - - - - - 1.72 - - - - - - 3.79 3.09 - 1.57 - - -
-2.07 -0.0 1.52 0.83 - -2.52 - - -2.66 -2.83 -2.5 -1.12 -0.16 1.43 -3.27 - - -2.42 2.99 - - - -2.47 -2.68 - 3.57 -1.36 - -1.58 -2.59 - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.0 - -
- 1.66 - -16.52 - - - -17.85 - - 1.2 - - 0.59 - - - - - - - - - 0.36 - 3.94 - - 1.4 - 2.52 -
- - - - - - - 0.35 - -0.28 1.11 -1.04 0.93 -0.29 1.79 1.65 - - 1.33 - - - - - - 3.49 1.8 - - -1.65 -1.27 -
0.2 - - - - - - -0.13 - -0.23 - 0.05 - - 1.18 - 1.94 - 2.22 - - - 0.96 -0.07 - 3.26 1.58 - - - - 0.89
- - - - - - - - - - - - - - - - - - - - - - - - - 5.0 - - - - - -
0.87 - - - - - - - - - - - - - - - - - 1.88 - - - - - - 4.73 - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.