Heatmap: Cluster_47 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
- - - - - - - - - - - - - - - - - - 2.72 - - - - - - - - 4.45 - 1.81 - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - 5.0 - - - -
-0.83 - 0.56 - - 0.76 1.99 -0.95 - - - - - - -0.35 - - -0.63 - - 1.61 - - - - 1.3 - 4.07 - - - -
-2.0 - - - - -10.83 - - - - - - - - -1.23 -0.62 - - 4.24 - - - - - - - 3.55 - - - - -
-1.82 - - -4.28 -3.72 -2.1 2.6 0.66 0.16 -0.54 - - - -3.99 0.93 - -0.85 -1.1 -1.19 - - - - - - - 0.9 4.01 - - -1.2 -3.85
- - - -0.03 - - 0.35 1.41 0.4 0.72 0.32 - -0.57 - - - -0.56 - 0.29 - - - - - - - - 4.04 1.35 0.34 - -
- - - - - - - - - - - - 0.26 - - 2.17 0.27 1.12 1.2 - - - -0.85 1.19 - - - 3.09 0.94 2.3 0.31 0.26
- - - - - - 1.17 - - - - - - - 1.14 - - - - - - - - - - - - 4.63 1.5 - - -
- -0.24 - -0.53 0.45 0.03 0.4 -0.73 - - 1.08 - 0.08 -0.31 -0.55 -0.75 -1.06 -0.38 2.93 - - - - - - -1.01 - 3.21 -1.14 - - 0.87
- - - - - - 0.08 -0.03 1.04 - - - 0.41 - -0.45 - - - 3.6 - - - - - - 1.27 - 3.5 - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - 5.0 - - - -
-0.34 -0.38 -1.08 -0.9 -0.87 -0.14 0.08 -0.07 -0.03 0.29 -0.56 -0.44 -0.31 -0.58 -0.61 1.3 -1.79 -1.43 2.95 -7.06 - - -0.78 -0.73 -1.48 1.58 0.72 0.41 -0.93 -0.83 -1.32 -1.38
- 1.13 - - - - - - - - - - - - - - - 2.07 3.43 - - - - 1.52 - - - 3.58 - - - -
-0.1 -0.0 0.02 0.19 0.28 0.01 0.13 0.1 0.26 0.31 0.22 0.15 -0.96 -1.07 0.39 -0.6 -0.33 -1.09 1.77 0.56 -0.73 -0.64 -1.15 -0.91 -0.81 0.94 0.28 0.32 -0.59 -0.48 -0.9 -0.74
-0.36 -0.23 -1.43 -0.96 -2.03 -1.47 -0.77 0.04 -0.28 -0.82 0.0 -0.95 -4.29 -1.66 - -0.89 -1.23 -1.06 2.87 - -1.23 - -0.18 -0.99 -0.58 1.34 1.46 2.29 0.24 -0.29 -2.92 -1.25
- - - - - - - - - 1.55 - - - - - 3.17 - - 0.98 - - - - - - - - 4.18 - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - 5.0 - - - -
- - - - - - - - - - - - - - 0.82 - - - 1.55 - - - - - - - - 4.77 - - - -
- - - - - - - - - - - - - 1.82 - - - - 1.81 - - - - - - - - 4.15 1.87 1.85 - -
-0.37 0.46 -0.35 -0.0 0.09 0.45 0.13 0.2 0.5 -0.31 -0.1 -0.5 0.35 0.56 -0.51 -0.19 -1.09 -1.14 2.74 - - - -0.69 -1.03 0.86 -0.74 0.56 0.49 -1.06 -1.15 -2.54 -3.51
-0.85 0.46 - 0.97 - - - - - 0.39 - - - - 0.0 - 0.74 1.27 2.2 - - - 0.76 - - - - 3.95 - - - -
- - - 1.17 - - - - - - - - 1.84 - - 2.95 - - 1.72 - - - - - - - - 3.92 - - - -
-0.64 -0.05 -0.53 -1.28 -0.4 -0.22 0.48 0.11 0.23 -0.58 -0.33 -0.6 -2.65 -2.14 -0.68 -2.74 -0.43 -0.37 2.73 - - -0.85 -1.1 -1.65 0.16 -0.62 1.64 2.01 -1.74 0.03 -1.43 -0.62
- 1.5 - 1.92 - - - - - 1.51 - - - - - - 0.15 - - - - - - - - - - 4.26 0.17 0.17 - -
0.31 0.47 -0.16 0.1 -0.34 -0.23 0.46 0.46 0.05 -0.22 -0.18 -0.23 - -1.11 -0.11 -3.54 -3.84 -1.59 3.14 -2.85 - - -2.8 -2.27 -1.85 0.77 2.07 0.82 - -2.76 - -2.94
0.08 1.0 - - - - 1.07 - - - - - - - - - - - 3.77 - - - - - - - - 3.45 - 1.2 - -
-0.52 -0.15 -0.22 -0.29 0.54 -0.08 -0.28 -0.77 0.24 -0.01 0.32 -0.1 -0.33 -0.71 0.22 0.41 -0.02 0.04 1.88 -2.43 -0.87 -2.25 -0.14 0.04 -2.7 1.14 0.18 0.8 -0.52 -0.1 -0.71 -0.7
- - - - - - - - - - - - 2.57 - - - 0.45 - 1.45 - - - 1.51 - - - - 3.89 0.51 0.52 - 0.46
- - - - - 0.23 1.15 1.48 - 0.52 - - - - - - 0.51 - - - - - - 0.32 - - - 4.15 0.38 1.39 - -
- 0.76 0.55 - - - - 1.57 - - - 0.85 - - - 1.91 - - 3.47 - - - - - - - - 3.2 - - - -
- 0.5 0.33 - - 0.77 - - - 0.45 - - - - - - - - 3.45 - - - - - - - - 3.94 - - - -
- - - - - - 2.25 - - - - - - - 1.64 - - - - - - - - - - - - 4.59 - - - -
- - - - - - - - - - - - - - 2.5 - - - - - - - - - - - - 4.72 - - - -
- - - - - - - - - - - - - - 2.4 - - - - - - - - - - - - 4.74 - - - -
- - - - - -0.13 - - - 1.57 - - - - 1.17 - - - 3.67 - - - - 0.04 - - 2.19 2.21 - 0.99 - -0.12
-1.66 - 1.38 0.21 - - 0.88 -0.82 - -0.77 - 0.38 - -0.33 0.97 - - - 3.97 - - - - - - 0.59 1.9 - - - - -
-3.16 -0.59 - -1.48 - -0.69 1.69 0.13 -0.5 -1.12 -2.13 -1.09 -2.77 -0.29 0.91 - -0.35 0.21 1.86 0.08 - -1.41 -2.8 -1.37 - 0.48 1.9 2.59 0.47 -0.93 -0.97 -3.04
0.14 0.5 0.24 0.67 -0.35 -0.04 0.3 0.67 -0.2 0.3 0.36 0.43 -2.99 -2.16 -2.05 -1.74 -1.29 -1.19 2.33 -4.48 -4.08 -0.57 -0.93 -2.38 -0.18 1.43 1.14 1.06 -2.07 -1.54 -1.18 -1.89
- - - - - - - - - - - - - - - - - - - - - - - - - - - 5.0 - - - -
-0.02 -0.3 -0.77 -0.67 0.32 0.02 0.2 -0.08 0.08 -0.18 -0.06 -0.0 -5.8 -2.92 -3.27 -5.15 -1.48 -0.54 2.84 - -1.2 -1.31 -1.73 -2.01 -2.44 0.36 2.0 1.93 -1.28 -1.45 -1.57 -1.23
- - - - - - - - - - - - - - - - - - 2.87 - - - 1.83 1.81 - - - 4.14 - - - -
- -0.4 - - - - - - - - - -0.46 - - 0.66 - 1.32 - 3.52 - - - - - - - -5.72 3.73 - -0.07 - -0.37
- - - - - - - - - - - - - - - - - - - - - - 2.51 - - - - 4.72 - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - 5.0 - - - -
-1.81 - - - - - - - - - - - -0.14 -0.53 3.15 0.01 -0.17 - 1.71 - - - - - - 0.8 1.11 3.51 - -0.28 - -
0.15 - - - - -1.03 - - - -0.45 - 1.08 - -1.13 0.01 - - - 2.65 - - - -1.22 0.17 - - 1.38 3.7 0.17 0.24 -1.37 -
-1.78 -0.23 - -1.21 - - 0.52 - -0.46 0.25 -1.23 -0.21 - 1.37 -1.15 - - - 2.88 - - - - 0.65 - -0.02 0.27 3.14 -0.72 1.12 - -
- - - - - - - 0.66 - - - 1.25 - - - - - - 2.17 - - - - - - - - 4.56 - - - -
-0.75 - 0.38 0.72 -0.41 - -0.47 - - - - - - - 0.36 - -0.24 - 3.19 - 0.93 - 0.58 -0.28 - - - 2.94 -0.36 0.64 -0.39 -0.43
- - - 1.16 - - - - - 1.27 - 1.59 - - - - - - 1.63 - - - - - - - - 3.9 - 2.66 - -
-0.02 0.21 -0.31 -0.28 -0.57 0.12 -0.31 0.29 0.35 -0.45 -0.32 -0.14 -0.75 -0.96 -2.65 0.29 -0.94 -1.7 2.67 - - - 0.11 0.03 -0.01 0.65 0.8 1.42 -0.59 -0.57 -1.18 -2.37
- - - - - - - - - - - - 2.58 - - - - - - - - - - - - - - 4.7 - - - -
-1.64 - -0.71 - - - - - - - -0.55 - - - - 1.41 0.67 1.08 0.66 - - - 0.72 1.98 - - - 3.03 0.56 2.27 1.24 -
- - - - - - - - - - - - - - - - - - - - - - - - - - - 5.0 - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - 5.0 - - - -
-2.16 -0.13 -1.23 -0.08 0.02 0.49 -1.15 0.12 -0.15 0.2 -2.85 -0.29 0.75 -1.93 -3.34 1.14 0.53 0.58 0.75 - - - 0.46 1.4 -0.14 -0.96 0.04 1.19 0.03 0.61 0.8 -0.69
- - - - - - - - - - - - - - 2.5 - - - - - - - - - - - - 4.72 - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - 5.0 - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - 5.0 - - - -
-0.04 -1.23 -3.23 0.55 -1.58 -0.65 0.26 0.32 -0.04 -1.73 -0.1 -1.33 -3.87 -0.89 -1.7 -2.15 -0.4 -0.75 3.13 - - - -0.48 -1.42 0.51 0.42 1.69 1.27 -0.78 0.36 -2.49 -2.13
0.16 0.23 0.05 0.34 0.28 0.36 -0.25 0.02 0.09 0.1 -0.23 -0.23 0.11 -0.34 -1.13 0.69 -0.15 -1.85 1.63 -1.92 -0.48 -1.24 0.22 0.19 -0.73 0.88 -0.11 -0.2 -0.39 -0.34 -0.51 -0.33
- - - -2.53 - -0.96 - -1.19 - - - -1.53 - 0.76 3.05 -1.9 - -0.83 -1.07 - - - -1.0 -2.06 1.51 1.51 2.45 2.72 -0.93 -1.96 - -
- - -0.96 -1.3 - - -0.72 - - -1.84 0.44 - -1.38 - 0.11 0.25 -1.41 - 3.55 - - - - -1.61 - 1.05 2.5 2.24 - -1.54 -0.58 -1.65
0.22 0.18 -0.05 0.25 0.05 0.05 -0.13 -0.13 0.04 0.05 -0.17 -0.05 -0.12 -0.4 -0.81 0.12 -0.51 -1.5 2.32 -1.21 -0.15 -1.15 -0.48 -0.57 0.93 -0.07 -0.25 -0.42 -0.72 -0.6 -0.43 -0.45
0.21 -0.03 -0.13 -0.22 -0.09 -0.26 -0.32 -0.12 0.06 0.04 0.32 -0.07 0.05 -0.66 -0.91 0.56 -0.61 -0.79 2.31 -5.47 -1.84 -7.29 -0.68 -0.3 -3.55 1.62 0.41 0.65 -0.22 -0.24 -0.99 -1.13
0.27 0.22 -0.06 0.14 0.2 0.18 -0.17 -0.06 -0.13 -0.02 0.17 -0.0 0.22 -0.72 -0.05 0.31 -0.1 -0.79 1.7 -5.32 -3.31 -0.19 0.21 0.24 -1.22 0.03 -0.08 0.16 -0.23 -0.09 -0.04 0.09

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.