Heatmap: Cluster_46 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
- - - - - - - - 4.79 - - - - - - - - - -0.78 - - - - - - 1.89 - - - - - -
-1.06 -1.05 0.2 -0.55 - 0.14 - 1.38 1.92 -1.05 -1.35 -2.4 0.25 0.85 0.6 -0.95 -1.65 -1.05 -0.42 - -2.48 - -1.88 -0.01 -1.37 1.05 2.68 0.96 -1.21 -0.3 -1.67 -1.81
-0.01 0.57 0.74 -0.04 -0.65 0.57 -0.63 0.18 1.67 1.43 0.34 0.67 -3.27 0.88 1.53 -3.27 -4.4 -1.6 2.08 - - - - -4.33 - -0.11 0.35 -1.16 -2.9 -1.58 -1.45 0.18
-0.48 -2.17 -3.83 -2.1 -0.33 0.34 1.15 0.38 1.39 0.16 -0.22 -0.9 -0.83 -3.45 -0.62 -0.36 0.62 0.58 0.8 -1.26 - - -0.79 -0.54 -1.44 -1.27 1.0 1.53 0.77 0.21 0.95 0.05
-0.27 0.31 0.49 0.74 0.41 0.66 -0.72 -0.78 2.2 0.91 1.35 -0.06 -1.46 -0.61 - -1.83 0.55 -2.88 -1.68 - - - 1.45 1.47 -1.34 -0.0 - -1.85 -0.45 -0.64 -1.26 -0.71
-0.33 -2.13 -1.01 -0.07 -0.06 0.47 1.13 0.37 1.27 1.14 -0.31 -1.09 -1.86 -3.01 0.31 -2.85 -0.95 -0.11 -2.01 -0.85 0.5 - -1.34 -1.41 0.21 0.25 1.6 1.81 -0.67 -0.55 -0.42 -0.65
-1.44 0.66 - - -1.36 -7.4 - -0.59 3.88 1.34 - -1.02 - - -7.2 - - -5.51 0.15 - 1.39 - - - - -5.45 2.68 -1.18 -0.84 - - -
-1.45 - - -0.24 - -0.45 0.89 - 2.46 - - -0.74 1.19 - 1.59 -0.23 0.53 1.13 2.46 - - - 0.51 - - - - 1.72 1.07 - - -
-0.46 -1.14 -0.48 -0.7 -0.51 0.64 0.62 0.98 0.76 1.29 0.4 -1.01 -3.77 -2.59 -1.31 -2.99 -0.44 0.95 -0.72 -0.66 -0.56 -0.16 -1.41 -1.64 0.11 0.19 1.45 0.96 -0.25 -0.44 0.44 -0.01
-2.72 - -1.68 2.05 -0.14 -1.47 1.82 - 2.57 - - - -1.39 0.18 - -0.4 -0.69 - -1.44 - - - 1.23 0.79 - -0.46 0.77 1.66 -0.74 0.6 0.25 -1.33
-1.01 -0.06 -1.78 -0.79 0.5 0.67 -0.59 0.37 1.96 -0.77 -0.57 0.01 -2.65 0.38 0.54 -0.93 -0.4 0.48 2.53 - - - -0.73 -0.46 -0.35 0.66 - - 0.31 -0.13 -0.39 -0.78
1.77 -0.08 -1.31 1.0 0.05 0.41 2.02 -0.29 2.32 -1.16 -0.08 -1.02 - 0.86 2.35 - - - - - 0.34 - - - - 0.73 0.36 - - - - -
-1.9 -1.26 -1.56 1.46 -0.66 0.15 0.34 1.26 2.14 -3.47 -0.28 -0.22 - - -3.76 - -1.01 -1.43 -0.3 - - - -1.45 -1.51 -0.57 0.31 2.52 2.49 -2.13 -1.5 -1.53 -
- - -0.89 - - 0.94 0.94 - 2.83 1.0 - 1.73 - -0.18 - - - - 0.64 - - 3.67 - - - - - - - - - -
-0.07 - 0.04 - 1.2 0.71 -0.09 1.44 2.51 1.16 1.83 -0.71 - -1.62 - 0.06 0.96 -0.13 -1.11 - - - - 0.17 - 0.58 -0.32 - 0.33 -1.02 - -1.08
-0.71 1.87 -2.05 -0.11 - 1.61 1.33 - 1.86 -1.32 0.64 - - - - - 0.65 - - - 0.37 - 0.15 -0.44 0.12 0.77 -0.52 2.44 - -0.64 -0.46 -1.31
1.39 2.01 1.05 -0.66 0.12 0.96 0.73 0.9 2.17 1.39 1.32 1.25 - -1.67 -1.74 - - 0.12 -2.01 - - - - - -0.21 -0.37 -1.81 - -3.14 -3.01 - -
-1.47 -1.11 -1.9 -0.46 -0.19 -1.55 -0.35 0.47 1.53 1.19 -1.17 -0.32 - -3.33 -0.19 -3.39 0.42 -0.25 -1.2 -0.74 -1.22 - -0.91 -0.75 2.05 -0.89 0.77 1.71 -0.78 0.6 0.3 0.63
- - - 2.84 - 1.46 1.46 - 4.03 - - - - - - - - - 1.58 - - - - - - - - - - - - -
-1.55 -0.27 -0.1 -0.19 -1.35 -0.7 1.23 0.91 1.98 1.47 1.01 0.66 -0.02 0.45 0.73 1.09 -1.0 -3.37 -1.41 -0.68 -3.28 -1.57 -2.68 -1.53 -0.39 1.06 -1.74 -2.83 -1.09 -0.89 -1.73 -2.5
-0.03 0.54 0.6 0.31 -0.18 0.61 -0.59 0.3 1.38 0.66 -0.24 0.35 0.79 0.12 0.43 0.82 -2.83 -3.11 -1.6 -0.51 -0.61 -2.33 -2.2 -1.39 -0.49 0.79 0.2 0.73 -0.83 -0.7 -1.12 -0.59
-2.03 - - - - - - - 3.47 -0.79 - 0.34 - - - - - 0.05 -0.83 - 0.8 - - - 2.28 1.47 1.78 1.7 - -0.77 - -0.84
- - - - - 0.74 0.99 - 4.74 - - - - - - - - - - - - - - - - - - - - 0.76 - -
-2.38 - 0.7 -0.4 - 1.09 - 0.5 3.68 -0.21 - -0.97 - 1.07 -1.58 - - - 0.74 - - - -0.9 - 2.17 - - 1.36 - - - -
-1.72 -0.66 -1.08 0.41 -2.83 -0.66 -0.54 -1.98 1.91 0.6 -1.25 -1.43 -1.2 -3.12 -1.79 - -1.02 - -0.13 -0.62 1.8 3.24 -1.84 -2.31 2.22 - - - -7.84 -2.34 -2.36 -3.44
-2.44 - - 0.2 - 1.59 - 0.68 2.06 - 1.48 0.59 - 2.31 1.58 0.23 -0.87 -0.64 0.58 - - - - - - - 2.08 - -0.01 -0.98 - -
- -0.1 - - - -0.89 -1.13 1.56 3.4 - -0.24 0.53 - 1.53 - - -0.98 - 0.02 - - - 0.16 -1.05 - - 1.47 1.29 -0.95 0.04 0.0 -1.06
-0.3 0.45 - 0.83 -0.85 0.17 - -1.3 1.75 0.38 - -0.05 - - -0.03 - - - 2.59 - - - -1.04 -0.94 - 2.49 2.37 - -1.04 0.04 - -
-1.14 -3.76 -2.44 0.81 0.72 1.13 1.12 1.81 1.98 -0.86 0.71 1.17 - - - -2.45 -0.42 -1.95 -1.19 - - - -0.71 - 0.34 1.2 -0.34 0.88 -0.55 -0.05 0.12 -1.11
-0.08 -2.67 -1.8 -1.48 -2.4 0.22 0.17 -1.01 2.29 -0.84 -1.49 -0.2 - 0.59 1.38 - - - 3.37 - - - - - - 1.51 1.24 -0.11 - - - -
-0.98 -1.74 -1.97 0.16 -0.55 -0.11 -2.45 0.3 1.36 -0.83 1.0 0.87 0.1 -0.99 0.24 -0.88 -0.17 0.31 -2.62 - -0.19 1.39 0.77 1.01 -3.78 0.51 0.98 -0.12 -0.66 0.04 -0.62 -1.69
-2.31 0.07 - 0.15 - - -0.89 -1.08 2.58 1.74 - 0.12 0.38 0.52 - - - - 3.41 - - - - 0.33 1.28 - - - - -0.74 - -0.84
-2.65 -0.33 0.78 1.12 2.14 1.68 0.33 1.68 1.86 -1.38 1.19 -1.35 - 0.07 - - - - - - - - -1.0 - - -0.01 0.1 2.11 - -1.12 - -
1.17 0.09 -0.68 -0.19 0.68 0.72 -0.62 0.94 1.42 1.88 2.0 1.06 - 1.08 -1.33 -1.27 -3.94 -0.88 -2.36 - - - - -2.31 -14.02 2.08 -1.32 -2.5 - -2.57 - -
-2.39 -0.66 -2.67 -0.9 0.54 0.89 0.88 1.11 0.6 1.27 -0.91 -1.21 -2.24 -2.83 0.19 -3.79 -0.15 0.75 -0.5 - -0.53 - -0.74 -1.64 0.36 -0.2 1.65 -0.02 0.53 0.48 0.77 0.01
-0.21 0.36 -0.13 0.2 0.32 1.06 0.26 0.88 1.41 0.89 0.26 0.44 -1.31 0.27 1.02 -2.16 -1.95 -2.19 -1.46 - - 1.78 -1.39 -3.04 -2.01 -0.42 1.37 0.18 -2.5 -1.23 -2.08 -2.57
-0.21 -0.22 1.58 0.5 0.06 -0.41 0.73 0.53 2.53 - -0.98 -0.51 - - -1.02 - 0.39 - - -1.08 - - - - 1.54 2.03 2.25 - - - - -
-0.05 -0.73 -0.76 0.1 0.42 0.38 1.2 0.25 1.25 1.4 0.24 -0.56 -0.53 -0.01 -0.24 0.15 0.39 -0.04 0.66 -4.49 -1.37 -2.13 -1.17 -2.07 0.05 0.08 -0.06 -0.45 0.1 -0.65 -0.3 -0.67
-1.54 -1.67 -0.86 -0.55 -1.45 -0.29 0.23 -0.31 1.38 -0.4 -0.06 0.25 1.17 -0.42 -0.93 0.08 -1.48 -2.04 0.6 -1.21 -0.24 2.46 -1.07 -0.41 -1.03 0.33 -0.09 1.47 -0.52 -3.06 -1.51 -3.15
- - - -0.53 - - -0.16 - 3.88 -0.42 - -0.24 - 1.97 2.21 - - 1.39 0.96 - - - - - - - - - - - -0.05 -
0.07 1.47 -0.1 -2.28 1.12 1.41 0.69 -0.75 2.55 1.9 1.08 0.05 -0.87 - - -1.17 -0.61 -0.74 -0.2 - - - -1.87 -3.08 0.05 0.5 -1.55 -0.77 -2.99 -2.0 - -
-0.18 -2.02 1.02 -0.66 0.01 -0.27 0.85 0.53 0.55 -0.26 0.01 -1.68 1.6 -1.13 -2.07 0.12 -0.69 -0.69 1.97 - - - -0.72 0.77 -1.03 0.91 1.25 -0.12 -2.06 -1.06 -0.51 -3.15
-2.6 -1.28 - -2.45 - -0.09 0.73 1.06 2.28 0.35 0.72 0.76 - -0.49 - -1.42 -2.51 1.25 -1.25 - -1.34 -0.5 -1.31 -3.64 1.75 0.87 0.39 1.13 -0.04 0.61 -2.62 -3.69
- -0.59 - - 2.12 0.07 0.81 0.23 2.68 -0.74 -1.68 0.41 - - -2.13 -1.37 0.06 1.29 - - - - - -0.53 - - 0.93 1.82 0.44 -1.49 0.49 0.02
- - - 1.86 -1.09 -0.93 -0.13 1.0 3.1 - - - -0.87 -1.07 1.03 - - -0.83 - - - - -0.07 - - 1.08 2.95 - -1.1 -1.0 -1.04 -
-1.51 -1.45 -1.73 -1.37 0.22 -1.25 -0.46 - 2.53 2.38 1.36 0.9 - - -1.01 - 0.41 1.68 1.86 - - - -1.36 -1.38 - - 0.11 - -1.29 - -0.32 0.2
1.38 0.08 0.32 1.01 -0.06 0.19 1.49 0.95 1.51 0.12 1.24 1.12 -3.66 0.11 0.98 - -3.79 - -2.21 - - - -2.14 -1.78 -1.76 1.06 0.09 1.22 - -3.78 - -
-1.83 -0.04 0.96 0.96 -1.33 1.83 1.62 1.38 2.06 -0.81 0.02 0.1 -3.61 -2.01 0.12 -3.46 -0.83 -0.36 -0.42 - - - -0.38 -1.76 0.5 -1.08 0.23 - 0.01 -0.13 -1.11 -1.86
-0.88 -0.88 - 0.24 - 0.43 0.15 -2.7 3.47 0.67 - 0.83 - - -1.99 - -2.53 0.45 - - - - 0.92 -0.75 2.15 - - - -2.57 1.66 -0.7 -
-0.31 -2.12 -1.56 0.46 -3.62 -0.27 -2.05 0.52 2.23 2.48 2.93 0.58 -1.86 - - - -2.44 - -2.58 - - - -3.44 -3.52 - 2.36 - -0.28 -1.99 -3.56 -3.57 -3.65
-2.79 - 0.29 -0.41 -1.96 0.64 -0.75 1.41 2.29 0.89 0.16 1.4 - -0.74 -0.77 -1.67 -0.19 - -1.83 - - - -0.78 0.25 - 0.36 1.62 1.58 -0.21 -1.79 -1.81 0.15
-0.88 1.27 - -0.09 0.73 -0.51 0.56 0.81 2.72 -1.58 - -0.18 -1.04 1.36 -1.15 - - - 0.64 - - - -1.17 - - 1.25 1.0 2.05 -1.77 - -1.43 -
- 0.71 - -0.66 0.91 - - - 4.05 1.28 -0.31 - - - - - 0.59 - 0.82 - - - - -0.12 - - - - 1.31 - - 0.42
-2.87 -2.32 -1.92 -2.16 -2.15 1.37 0.81 0.59 1.41 0.25 -0.71 -0.04 -1.38 - -1.78 -2.79 -0.67 0.46 -0.29 - - 1.08 0.19 -0.76 -0.02 1.8 1.58 1.22 -0.82 -0.28 -0.79 -1.18
-2.3 -0.35 -0.56 -1.35 - 1.09 0.72 0.8 1.91 -0.85 -0.54 -1.23 - - -0.04 -1.78 0.59 -1.14 -0.5 - - - -0.04 -2.15 - 1.2 0.87 1.69 0.81 1.33 0.69 -0.61
-0.31 1.2 0.62 0.95 0.36 0.9 0.71 0.29 1.46 0.92 0.95 0.75 -0.77 -1.69 -0.78 -0.28 -0.03 0.23 0.06 - - - -0.37 -0.35 - -2.36 -1.2 -1.21 -0.08 0.1 -0.67 -1.35
-0.73 - -2.9 -0.69 0.04 -0.45 -0.18 -0.09 1.92 0.87 0.79 0.2 - -2.65 -0.16 -1.22 -1.51 -0.86 0.56 -2.61 -2.16 - -0.16 -1.45 1.79 1.55 0.59 -1.01 -0.27 -0.18 -0.04 0.99
- 0.2 1.61 0.91 - - 0.24 - 4.26 0.02 0.12 1.78 - - - - - - - - - - - - - - - - - - - -
-0.07 - - - - - - - 4.4 - 2.52 - 0.56 - 0.53 - - - - - - - - - - - - - 0.36 - - -
-0.67 -0.36 -0.58 0.57 - 0.3 0.19 0.7 1.38 -0.68 0.94 0.21 -2.16 -1.0 0.36 - -0.09 -0.05 -0.51 - - - 1.23 0.37 -0.3 0.55 0.84 1.68 -0.57 -0.15 -0.77 -1.1
0.45 0.22 -0.3 0.91 0.58 1.02 0.44 1.17 1.45 0.71 1.17 0.56 -3.26 -1.16 -2.08 -2.48 -0.61 -1.22 -1.18 -4.3 - 1.68 -0.48 -1.16 0.59 -1.55 -0.85 -1.09 -1.01 -0.57 -1.08 -3.04
-1.58 -1.5 -0.42 -0.6 -2.17 -0.17 0.36 0.18 1.53 -0.11 0.78 0.14 0.37 0.83 -0.82 -0.75 -1.0 -1.64 1.42 - -0.07 -2.98 -0.21 0.2 -2.48 1.59 -0.82 -0.23 -0.54 -0.9 0.02 1.05
0.71 -2.05 -1.25 -1.69 -3.37 -0.56 1.38 0.43 2.02 0.58 -0.74 -1.51 - - -0.63 - -0.25 0.59 -2.1 -0.33 - -0.24 -1.94 -3.74 -0.61 0.24 1.8 2.13 -0.46 -0.62 -0.31 0.12
0.71 0.91 -1.12 1.21 0.24 0.75 0.51 1.23 1.22 0.48 0.85 0.89 -1.67 -2.18 -0.64 -3.24 - 0.39 -1.55 - - 1.33 - -3.47 -1.26 -2.44 0.6 1.65 -2.03 -1.02 - -2.63
-10.9 - 0.14 0.05 - - 0.42 - 4.03 - - - 1.76 - 0.86 - 0.64 1.27 - - - - - - -10.88 - - - - 0.62 0.58 -
-0.03 - -1.14 0.05 -1.26 -0.51 1.81 0.29 2.71 1.46 1.26 0.39 - - 0.44 - - - - - - - - - 0.95 2.18 1.26 - - -1.1 - -
0.99 0.36 -0.36 0.49 0.45 - 1.73 0.54 2.46 -1.79 1.87 0.8 -0.61 -0.61 -1.36 0.05 - -0.05 0.31 - - - - -0.14 - 0.55 -0.04 - -1.71 -1.72 -1.76 -
-0.45 -4.02 -2.65 -2.12 -1.68 -0.07 0.58 0.96 1.64 1.05 0.26 0.93 -2.07 -3.84 -2.09 -1.82 -0.4 -0.5 -1.21 - -0.95 0.53 -1.09 -0.72 1.43 0.31 0.82 -0.6 0.16 0.29 0.84 0.66
0.53 - - 1.05 - - - - 2.73 1.16 2.74 - 0.3 - 0.08 - - 1.94 - - - - - -1.99 - 2.28 - - -1.11 - - 0.29
1.56 1.3 0.75 0.28 -3.4 -0.41 1.68 1.01 1.66 1.47 2.09 1.46 - 0.98 1.34 - - - - - - - - - - - -3.74 - - - -3.92 -3.99
0.3 0.53 0.39 -2.77 0.71 1.14 0.19 0.29 1.83 -2.65 0.44 -1.84 -0.24 - -0.54 0.68 -0.55 - 2.29 - - - - -2.32 - 1.61 1.55 -0.09 -2.96 - - -1.45
0.54 -1.44 -3.37 0.45 2.81 2.07 -0.38 - 2.37 -4.32 0.96 0.01 -0.96 0.3 0.73 1.11 - -0.8 -0.62 - - - - -0.38 - - - - -0.31 -29.29 - -2.35
-1.68 - - -0.37 -1.89 -0.56 - -0.29 1.75 -2.1 -1.67 0.58 -0.45 - -0.59 -0.37 -2.62 - 1.0 0.11 -0.75 1.39 -1.08 -2.48 1.57 1.18 1.71 1.77 -0.64 -0.26 -1.63 -0.36
1.8 -2.02 -0.93 -0.0 -3.14 0.0 0.37 0.66 2.79 -0.13 0.49 -1.34 -2.4 -1.57 0.12 - -2.41 -0.61 1.52 - - 0.7 -1.5 -2.49 -14.73 2.01 -1.26 - -2.61 -3.49 -2.55 -0.43
0.46 -1.01 - -1.67 -0.26 1.65 1.4 1.02 1.52 0.86 0.81 0.25 -2.18 - -0.57 -2.2 -0.52 -0.54 -2.08 -4.12 0.84 -0.6 -2.31 -1.01 - -2.47 1.05 1.3 -0.22 -0.15 -0.18 -2.09
-0.22 1.55 - - 2.04 1.56 - - 2.55 - 2.09 0.29 -0.9 - -0.15 -0.77 -1.08 - 1.82 - - - - -1.06 - 0.9 - - -0.08 - -0.9 -
-1.04 -2.86 -3.39 -0.08 0.4 0.62 1.4 0.07 2.02 -0.27 0.95 0.07 -3.31 -3.33 -0.46 -3.29 -0.55 0.51 -1.22 -3.2 0.41 - -1.15 -2.85 1.27 -0.34 1.08 0.74 -0.81 -0.45 0.24 -0.19
0.28 -0.3 -0.23 -0.31 0.32 0.56 0.63 0.32 0.68 -0.08 -0.44 0.06 -2.73 -1.81 -0.81 -2.44 0.37 -1.57 0.31 - 0.37 - -0.33 0.03 -0.2 -0.23 1.06 1.27 0.23 0.57 0.24 0.31
-2.26 - -3.11 -0.97 1.07 0.89 1.38 -0.59 2.1 -1.13 -0.03 -1.81 - -2.96 0.54 - -1.7 -0.12 -1.58 - - - - - 1.33 -1.72 1.49 3.09 -1.42 - -1.73 -
- - - - - -0.11 - - 2.22 - - - - - - 0.94 1.29 2.64 3.13 0.93 - - - - - - - 1.79 0.74 - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.