Heatmap: Cluster_132 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
-0.85 -1.0 -0.95 -1.19 -1.25 -1.48 -1.41 -1.29 -1.28 -1.17 -0.93 -1.36 1.79 0.4 -3.65 2.45 -1.12 0.02 1.5 -1.61 -2.12 - -0.11 1.09 1.28 0.23 -0.78 -1.09 -0.06 0.29 -0.39 -0.26
-1.85 -1.62 -1.33 -0.67 -0.84 -0.69 -1.09 -1.34 -1.3 -1.31 -1.18 -1.44 1.53 2.31 -1.17 2.34 -2.34 -0.93 2.04 -2.57 1.1 1.06 -1.74 -0.88 -0.03 -1.99 -0.87 -1.21 -2.25 -1.72 -2.2 -1.55
-3.41 -4.78 -2.31 -2.6 -1.36 -1.68 -2.19 -1.92 -2.19 -2.12 -2.34 -2.57 2.45 -0.84 -3.66 3.09 -0.88 -0.52 0.13 -2.88 -4.47 0.21 -0.06 0.03 0.16 0.18 -0.4 -0.91 0.72 1.3 -0.46 -0.25
-6.34 -3.42 -3.99 -5.15 -5.13 -3.79 -4.55 -2.4 -5.79 -3.98 -2.97 -3.77 2.65 0.49 -3.18 4.51 -5.36 - -2.08 - - - -5.41 -3.42 - -4.39 -4.18 - - -3.35 -5.4 -
0.25 -0.64 0.19 0.68 0.2 -0.61 0.26 0.63 0.07 -0.1 -0.39 0.08 0.45 1.62 0.87 2.91 -4.36 -3.67 0.08 - - - - -1.54 1.05 - -0.48 -1.86 -3.5 -1.75 -5.76 -1.65
-1.16 -0.98 -0.39 -0.52 -0.82 -0.54 -1.01 -0.46 -1.2 -0.45 -0.53 -1.17 2.2 -0.78 -0.24 2.74 -2.96 -2.83 0.5 - -0.96 -2.21 -1.03 -0.19 0.99 1.4 0.43 -1.49 -1.01 -1.03 -0.31 -2.48
-0.71 -0.64 -0.56 -0.85 -0.4 -0.71 -0.72 -0.45 -0.45 -0.48 -0.46 -0.76 1.06 1.33 0.33 2.62 -1.09 -0.65 1.06 -1.7 -3.38 - -1.29 0.29 -0.18 -0.07 0.16 0.63 -0.63 0.07 -1.86 -1.53
-0.98 -0.68 -0.88 -1.16 -0.58 -1.13 -0.91 -0.75 -0.32 -0.86 -0.45 -0.64 -1.67 0.01 -9.32 2.64 0.05 -0.5 1.57 - - - -1.14 0.87 -3.6 0.89 0.66 -0.52 0.33 0.91 -0.57 1.22
-2.4 -1.33 -2.43 -1.76 -1.42 -1.9 -1.51 -0.01 -0.51 0.0 -0.62 -0.78 2.7 -0.82 -1.27 3.51 -1.03 -0.33 0.14 -9.7 -1.59 -7.2 -2.07 -1.15 -3.53 -0.14 -2.15 -2.39 -0.36 -0.51 -1.41 -1.13
-0.32 -0.09 -0.12 -0.18 -0.11 -0.14 -0.3 -0.39 -0.24 -0.32 -0.38 -0.5 0.91 1.06 0.49 1.93 -0.45 -0.15 0.48 -2.5 -1.65 -2.42 0.03 0.21 -0.93 -0.46 0.37 -0.18 -0.25 -0.1 -0.31 -0.26
0.12 -0.63 -0.57 -0.45 -0.75 -0.72 -0.79 -0.66 0.05 0.14 0.39 0.53 1.81 -0.02 -0.87 3.04 -2.03 -4.39 -1.95 -2.02 -3.69 -1.48 -0.9 -0.6 0.55 0.52 -0.58 -0.82 -1.45 -1.04 -1.35 -0.96
- - - - - - - - - - - - 3.06 - - 3.29 -0.7 -0.03 0.76 -1.78 0.15 -2.89 -0.16 0.46 0.38 - - - 0.76 0.63 0.23 0.07
- - - - - - - - - - - - -0.21 - - 4.74 - - 0.7 - - - - - - - - - - -0.15 -0.09 -0.21
-1.61 -1.72 -0.99 -0.67 -0.26 -0.44 -0.32 -0.46 -0.41 -0.58 -0.58 -1.78 1.49 -0.02 -7.42 2.17 -1.33 -1.46 1.06 -2.81 0.78 -5.05 0.4 0.89 1.04 0.91 0.34 0.59 -0.9 -0.5 -2.07 -1.52
-1.52 0.54 -1.44 -1.25 - -0.61 -0.78 -2.76 -1.97 -1.26 -1.89 0.16 1.79 - -1.58 3.31 -0.2 -0.59 2.25 - - - - -0.08 -0.54 -1.4 -1.35 - -1.13 1.13 -0.37 -2.66
-0.42 0.81 -0.57 0.24 -2.06 -0.4 -0.07 0.51 0.21 -0.97 -0.2 -0.89 1.72 0.72 1.63 1.23 -0.52 -0.56 2.11 -2.24 -3.1 - -1.71 -0.91 -2.38 -1.74 -2.22 -0.62 -0.17 -0.22 -1.24 -1.3
- - - -0.9 - - - - - -1.79 - - 1.49 1.92 0.71 4.28 - 0.04 - - - - - -0.52 - - - 0.84 - - - -
0.66 -1.53 -0.94 -0.53 -1.55 0.6 -0.52 -0.62 -1.04 -1.1 -0.89 -0.61 1.32 1.14 -1.55 3.3 -1.53 -2.35 -0.15 - -0.62 - -1.12 -0.69 1.82 -1.86 - - -1.17 -1.8 -1.47 -0.85
-4.53 - - - - - - - - - - - 3.36 -0.3 0.16 3.58 -2.71 -1.72 1.26 1.02 - -1.48 -1.44 -0.96 - - - - -1.28 -0.86 -3.05 -0.72
0.37 -0.12 -0.32 -0.02 0.47 0.13 -0.35 0.08 0.62 0.78 0.74 0.35 2.2 0.43 0.82 2.71 -6.49 -7.26 -3.25 - -6.48 - -5.4 -1.98 -1.85 0.86 -3.19 -2.39 -3.93 -2.48 -4.43 -3.06
- - - - - - - - - - - - 1.57 2.86 - 3.68 - 0.61 2.07 - - - - - - 1.72 - - - - - -
- - - - - - - - - - - - 3.93 - - 4.07 - - - - - - - - - - - - - - - -
-0.4 -3.17 -1.77 -0.91 -1.7 -0.75 -0.41 0.12 -1.68 -0.78 -0.55 -1.7 0.98 2.25 0.29 2.81 -1.93 -0.78 -1.26 - -3.27 1.27 -3.54 -2.54 -0.41 -0.54 1.12 0.8 -1.03 -1.12 -2.29 -2.67
-0.48 -0.75 -1.05 -0.24 -1.03 -1.08 -1.22 -0.34 -0.74 -0.96 -0.4 -0.72 1.5 0.63 -0.24 1.92 -0.87 -0.46 -0.41 -2.1 -4.12 - 1.41 1.44 1.59 0.17 -0.41 0.14 -0.65 -0.55 -1.56 -1.49
-2.03 - - - - - -0.65 - - - 0.67 - -23.18 - - -18.59 1.59 - 2.12 - - - - 3.69 - - - - -7.58 1.06 2.36 1.06
-1.76 - - -1.5 - - - -1.3 -1.95 -1.18 -0.46 0.0 2.15 2.23 1.89 3.32 -4.06 - -3.93 0.22 - 0.58 -4.01 -1.99 - 0.81 - -1.31 -4.04 -1.43 - -
0.65 -0.4 -0.26 -0.47 0.13 -0.7 -0.45 0.01 -0.25 -0.16 -0.35 0.31 -0.77 -2.42 -2.13 2.59 0.58 0.64 1.38 -1.18 - - -0.48 0.68 -1.37 -0.92 -1.65 -1.0 0.28 0.83 -1.18 -1.73
-2.6 -2.13 -1.45 -2.7 -3.74 -3.66 -2.75 -2.23 -2.71 -1.78 -1.52 -1.47 1.45 0.51 -2.82 3.14 -2.69 1.82 -0.5 -3.66 - - 0.39 1.73 1.76 -1.58 -0.96 -0.84 -1.75 0.02 -0.66 -1.09
-0.16 -0.92 0.44 0.37 -1.13 0.46 0.27 -2.58 0.16 -1.9 -0.26 0.23 0.91 -2.43 -0.71 3.4 -1.74 -2.86 -0.42 -1.61 -0.93 -0.97 -0.48 -0.11 -0.21 -2.28 -0.85 -2.71 -2.37 -0.74 -0.85 -0.33
- - -0.87 - - - -1.59 - - - - - 2.11 2.81 - 3.36 - - 2.76 - - - - - - -0.48 - 0.74 - -1.48 - -
- - - - - - - - - - - - - 3.12 - 4.29 - - - - - - 1.92 - - - - - - - - -
-2.18 -1.0 - - - -4.03 - -2.49 - -2.41 -2.01 -3.21 2.71 1.2 -0.68 3.91 -1.99 -1.75 -2.46 - - - -1.21 -0.37 - -3.08 -2.87 - 1.52 -2.46 -0.5 -4.16
-2.5 -3.38 -3.89 -2.3 -1.36 -1.65 -2.48 -1.66 -2.48 -2.99 -2.82 -1.84 2.88 -0.0 -0.93 2.95 -0.96 -0.11 -0.28 -0.68 -1.41 1.33 0.09 -0.45 -0.49 -3.02 -2.74 -2.83 -1.1 -0.67 0.47 0.81
-1.47 -0.58 -0.79 -0.88 - - -0.51 -2.25 0.31 - 1.32 -1.05 0.74 2.45 1.7 3.7 - - - - - - - - - - - - -1.01 -0.38 - -
-0.69 - - - -0.62 -0.33 - - -0.18 0.67 - - 0.69 1.76 - 3.25 -1.55 - 1.8 - 0.65 - 0.02 - - 1.78 1.65 - - - - -
-1.5 -1.51 -1.49 -1.52 -1.64 -1.39 -1.58 -1.48 -1.19 -1.26 -1.51 -1.45 0.28 0.9 0.06 1.54 -0.8 -0.34 1.58 -0.0 -0.51 -0.34 0.93 1.8 -1.35 0.83 0.58 0.22 -0.25 -0.01 -0.35 -0.13
- - - - - - - - - - - - 2.23 - 2.2 2.99 - - 3.67 - - - - 1.02 - - - - - - - -
-0.59 -1.71 -1.39 -0.79 -2.04 -1.57 -1.63 -3.11 0.16 0.3 -2.3 -1.29 2.54 1.99 1.01 3.6 -4.46 -1.98 -2.13 - - - - -1.46 - -2.32 -2.0 - -4.47 -1.25 -4.44 -1.69
- - - - - - - - 0.76 - - 1.62 0.96 - 2.36 2.73 - 1.51 3.42 - - - - - - - - - - - - -
- - - -0.79 - - -0.42 -0.57 - - - 0.57 -0.15 1.13 - 1.03 -0.15 - 2.31 - - - 1.1 2.91 - 0.73 1.14 - 0.68 -0.26 -0.29 -0.37
0.01 -0.23 0.27 0.08 -0.26 0.05 0.9 0.84 1.14 0.27 0.51 0.43 1.0 0.06 -1.15 2.52 -2.2 -0.87 -2.69 - -3.55 - 0.42 0.38 0.02 -3.79 -1.19 -1.3 -1.63 -0.6 -2.72 -2.05
-2.16 - - - 1.82 - - -1.04 - 1.35 - - 0.33 2.42 1.9 3.43 - - -0.98 - 1.05 - - -0.97 - - - - -0.98 -0.97 - -
- -0.5 - - - - - - - 1.6 0.47 - 2.13 0.63 -0.52 2.63 0.74 - 2.11 - - - 0.82 0.74 - - 1.13 - 0.65 - -0.21 -
-1.07 -1.14 -0.82 -0.97 -0.96 -1.11 -0.86 -0.66 -0.53 -0.77 -0.86 -0.86 1.02 0.35 0.07 3.49 -1.21 -1.9 -1.08 -0.85 -0.66 -4.64 -0.82 -0.22 -2.56 0.02 -0.05 -0.24 -0.23 -0.14 -0.62 -0.61
- - - - - - - - - 0.07 - - 0.38 1.38 1.94 3.96 - 1.54 - - - - - - - - - - 1.2 1.28 - -
- - - -1.44 -1.62 0.37 - - - - 1.05 - 1.91 0.89 -0.88 3.91 - - 2.43 - - - - - - 0.09 - - -1.68 - - -
-0.45 - - - -1.76 - 0.08 -0.64 -2.21 0.59 - - 1.71 -1.18 - 4.52 - - -0.77 - - - - -1.84 - - - - - - - -
-2.15 - - - 1.1 - - - - -1.62 - 0.29 2.89 -0.09 -1.94 4.16 - - -0.52 - - - - - - - - - -0.17 - - -
-2.41 - -0.6 -1.46 - -2.29 -1.37 0.46 - - -2.11 -2.31 0.99 0.48 - 1.65 -2.03 -0.8 2.23 - 1.11 - 1.28 1.59 - 0.51 1.18 1.04 - -2.15 1.33 -2.02
- -0.05 - - - - - - 1.84 0.69 - - 2.47 - - 4.17 - 0.34 0.01 - - - - - - - - - - - - -
- - - - - - - 1.25 - - - - - - - 4.01 - 2.81 - - - - - - - - - - 1.71 - 1.67 -
-1.53 -1.6 -1.56 -1.47 -1.19 -1.33 -1.48 -1.46 -1.15 -1.28 -1.25 -1.31 2.48 1.48 0.19 2.84 -1.74 -0.28 -1.47 -0.77 -0.64 0.52 0.02 0.12 -1.9 -2.18 -1.12 -1.88 -0.76 -0.58 -0.31 0.21
-3.94 -4.86 -3.98 -4.28 -3.12 -3.38 -3.68 -3.22 -4.85 -4.89 -4.48 -4.67 1.19 1.54 -1.23 3.73 -5.02 0.14 -1.88 -3.6 -4.94 - -4.83 -0.84 -6.1 -0.81 2.64 0.45 -1.1 -0.93 -1.14 -0.8
0.12 0.05 -0.12 -0.11 0.22 0.14 -0.9 -1.21 -1.27 -1.58 -1.65 -1.65 -1.21 1.4 -0.24 -0.03 0.43 -0.22 1.1 -1.51 -0.32 -5.3 0.77 1.55 -0.42 -0.99 0.81 0.51 -0.55 0.12 0.44 -0.32
-1.24 -1.25 -0.55 -0.95 0.13 -0.88 -0.54 -0.28 -0.72 -0.73 -0.62 -1.14 2.23 1.64 -0.3 1.83 -2.0 -1.37 -1.06 -2.43 -2.0 -3.37 -0.6 0.88 -1.1 -0.11 1.65 -0.03 -1.38 -0.07 -1.27 -0.18
-2.73 -1.97 -2.24 -2.37 -2.12 -2.54 -2.34 -2.53 -2.11 -2.46 -2.45 -2.58 0.72 -2.12 -2.12 3.27 -0.95 -0.46 1.71 -0.83 -0.73 -4.72 0.03 1.08 -0.99 -0.11 0.1 -0.99 0.36 0.58 0.75 0.66
-0.37 -0.45 -0.27 -0.03 0.06 -0.24 0.02 0.16 0.16 0.51 0.16 0.02 1.23 0.43 -0.15 1.72 -0.24 0.16 0.02 -0.48 -1.16 0.27 -0.62 0.11 -3.09 -0.3 -0.89 -1.65 -0.41 -0.35 -0.32 -0.18
- - - - - - - - - - - - 2.36 - - 2.96 0.89 - 2.74 - - - 0.67 1.76 - - - - 0.92 0.85 0.91 -
- - - - - - - - -1.12 - - - -0.86 3.02 -0.34 4.14 - 0.65 -0.02 - - - - -1.08 - - - - -0.14 -1.0 - -
-0.87 -0.66 -0.42 -0.76 -0.8 -0.78 -0.86 -0.93 -0.64 -0.59 -0.56 -1.01 1.63 0.1 -1.31 1.97 -0.56 -1.13 0.53 -0.75 -1.91 -0.4 0.28 0.24 -0.31 1.08 0.51 0.2 -0.15 0.21 -0.02 0.21
- - - - - - - - -0.85 0.72 0.38 - 0.21 2.32 0.83 4.1 - - - - - - - - - - - 1.77 - - - -
-1.47 -1.06 -1.41 -0.59 -3.3 -0.76 -0.85 -1.9 -1.49 -0.72 -1.06 -1.12 0.98 0.1 0.03 2.45 -1.41 1.19 2.05 -2.38 -2.07 - -0.99 -0.02 -1.15 0.47 1.63 -0.69 -0.17 -0.36 -1.11 -0.36
-1.27 -1.32 -1.01 -0.9 -2.24 -0.89 -1.15 -0.88 -1.3 -1.03 -1.55 -1.91 1.49 1.13 -0.85 3.48 -2.54 -0.42 0.14 -4.03 -3.2 - 0.18 1.15 -1.51 -2.36 -0.29 -0.36 -0.66 -0.26 -1.26 -0.67
-4.09 - - - -2.49 -4.07 - -4.54 -4.52 - - -2.67 1.9 -0.83 -1.78 4.07 -1.27 0.47 0.45 - - - -1.76 0.31 -1.07 - - - 0.21 0.35 0.88 -0.62
-1.23 -0.71 -0.78 -1.26 -1.18 -1.33 -1.29 -1.73 -1.7 -1.67 -1.78 -1.65 1.53 0.37 -0.82 2.5 -0.91 0.65 1.58 -0.28 -1.5 -3.36 0.69 1.22 -0.15 -0.8 -0.94 -0.58 -0.25 0.3 -0.41 -0.07
-0.68 -0.65 -0.54 -0.63 -0.72 -0.56 -0.66 -0.57 -0.55 -0.69 -0.64 -0.81 0.77 1.45 0.56 0.98 -0.74 -1.34 0.83 0.27 -1.02 0.34 0.46 1.33 -1.04 0.23 0.36 0.32 -0.68 -0.47 -0.86 -0.52
- - -1.15 -3.51 - - - - -4.08 - - - -0.23 - -3.57 4.42 - -1.29 - - - - - - - - - - 1.43 0.38 -1.99 2.15
0.1 0.33 0.21 0.0 -0.1 -0.29 -0.2 -0.34 -0.14 0.02 0.06 0.16 1.15 -0.18 0.29 1.98 -1.53 -1.12 0.81 -1.06 -1.83 -2.17 -1.04 -0.02 -1.09 0.09 0.36 -0.16 -0.72 -0.6 -0.56 0.11
-1.23 -1.14 -1.24 -1.65 -1.47 -1.43 -1.56 -1.48 -1.5 -1.76 -1.55 -1.49 0.42 0.82 -0.23 2.41 -0.46 0.48 1.74 -1.56 -3.2 -2.27 0.21 1.24 0.31 0.64 -0.04 -0.78 0.15 0.27 -0.09 0.11
-1.92 -1.0 - - -2.52 -3.68 -2.14 -3.87 -2.8 -2.9 -0.77 -1.73 2.57 -3.8 -4.29 3.54 0.85 0.67 0.82 - - - 0.52 0.93 - - - - 0.21 -0.1 -0.98 -0.53
-1.16 -2.97 - -3.79 -2.35 -3.75 -4.87 -0.27 - -4.13 -2.71 -2.25 2.38 2.65 -3.12 3.22 - -2.0 2.01 - - - -4.74 -3.12 -0.07 1.59 -2.51 - -3.76 -1.88 - -4.8
-0.94 -1.16 -1.72 -2.06 -1.41 -1.39 -1.21 -0.38 -2.31 -1.18 -0.27 -2.12 -0.91 -0.13 -0.39 2.34 -0.45 -0.9 1.56 - - -1.63 1.41 1.83 -1.13 -1.38 -2.45 -0.54 1.92 0.95 -0.61 -0.53
- - - - - - - - - - - - 2.3 - - 2.44 1.28 - 0.63 - - - 0.69 1.13 - - - - 0.82 2.58 2.41 -0.25

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.