Heatmap: Cluster_60 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Root (elongation zone)
Root (meristematic zone)
Root (stele)
Root (tip)
Root
Leaf (3rd leaf of seedling)
Leaf (3rd leaf)
Leaf (apex)
Leaf (bundle sheath)
Leaf (mesophyll)
Leaf (Seedling)
Leaf
Internode
Stalks
Shoot
Shoot (apex)
Tassels (primordia)
Tassels
Anther
Pollen
Ear (immature)
Ear (inflorescence)
Ear (leaf)
Ear (primordia)
Ear
Silks
Kernels (germinating)
Kernels
Maternal transfer zone
Nucellus
Embryo
Endosperm (transfer layer)
Endosperm
Seeds
Coleoptyle (5 day)
Seedling
Whole Plant
- -6.61 -4.82 - -3.32 -3.78 -4.82 -6.92 -3.7 - - -4.07 -4.44 - -4.45 -5.16 - 0.86 5.06 -4.48 - - -0.5 -4.66 -5.23 -3.32 - -3.99 - - - -2.38 -4.58 -2.77 -9.76 -4.29 -
- - - - - - - - - - - - - - - - - - 5.21 - - - - - - - - - - - - - - - - - -
Zm00001d002206 (GRMZM5G834553)
- - - - - - - - - - - - - - - -1.84 - - 5.18 - - - - - - - - - - - - - - - -0.93 - -
Zm00001d002212 (GRMZM5G840111)
- - -1.1 2.31 -3.87 - - - - - - -2.12 - - - -2.42 - -0.49 4.73 -2.12 - - - -1.24 -1.43 0.83 - -2.09 - - - - - -0.45 - -4.6 -
Zm00001d002872 (GRMZM2G177866)
- - - - -11.68 -3.69 -4.0 -8.61 -3.27 -2.17 -6.0 -4.38 - - -2.58 -8.32 -8.58 -0.14 5.12 - -3.91 -7.49 -6.86 -5.17 -6.45 -1.98 -3.77 -4.95 - - -6.74 -3.68 -6.76 -5.57 -7.73 -3.53 -5.76
Zm00001d003086 (GRMZM2G111954)
- -9.5 -7.61 -6.6 -4.87 1.55 -0.26 -0.83 -2.71 -2.71 0.86 0.74 - -8.87 -3.1 -5.75 - 2.15 4.21 -9.72 -8.8 - -0.04 - -6.48 - - -0.3 - -4.02 -4.79 -3.67 0.2 -0.95 -1.49 -0.77 0.25
- - - - 0.61 - - - - - - -5.84 - - - -0.46 - -1.27 4.55 - - - - - - - - 3.32 - - - - -0.78 -2.28 -3.24 -5.66 -
- - - - - - - - - - - - - - - - - 1.28 5.1 -2.44 - - - - - - - - - - - - - - - - -
Zm00001d003650 (GRMZM2G347315)
-0.69 - -1.29 -0.12 -0.28 -2.21 -3.41 -5.24 -2.95 -2.83 -2.72 -2.72 -2.76 2.39 -2.62 0.14 -4.79 0.79 4.23 - -0.55 0.15 - -0.6 0.32 -3.65 - -0.23 - -1.7 - - -3.28 -1.74 -2.47 -2.11 -1.28
Zm00001d003651 (GRMZM2G347314)
-3.42 - -1.35 0.65 -0.84 - - -1.09 - - - -4.77 - - -2.82 -3.61 - 0.15 4.13 - -4.05 -0.5 - - 0.23 - - -0.45 3.13 1.56 - - -3.77 -4.0 -1.47 -2.32 -
- - -0.1 - -1.55 -4.01 - - - - - -4.23 - - -5.44 -0.29 2.98 - 4.3 -5.55 - - - - - 0.73 1.67 0.04 - - - - -5.95 -6.12 - -0.05 -1.83
- - - - -3.83 - - - - - - -1.19 - - -2.05 0.13 -1.48 2.02 2.45 -0.27 -0.31 - - - - - - - 4.56 - - - - -3.8 - - -
Zm00001d009184 (GRMZM2G322490)
- - - - - - - - - - -2.37 -3.89 - - -6.63 -3.66 - 1.13 4.83 -4.48 - -3.11 - - -2.66 -3.49 -4.08 -3.71 2.12 -1.04 -2.32 - -4.62 -1.43 -4.92 -6.41 -
Zm00001d009318 (GRMZM5G891502)
- - - - 0.2 - - - - - - -4.67 - - -1.35 -0.2 1.61 - 4.85 -0.27 - - - - - - - - - - -0.61 - -2.03 - -2.22 -2.71 -1.05
- - - - - - - - - - - -0.21 - - - 2.43 - - 4.75 - - - - - - - - 1.98 - - - - - - - - -
Zm00001d011326 (GRMZM2G075610)
- - - - -2.59 - -4.1 - -3.26 - - -5.07 - 0.41 -5.87 -0.41 0.14 1.23 3.1 -3.46 -0.43 -2.75 -3.1 -1.51 -2.32 -3.26 - 0.86 - 3.35 -4.71 2.17 0.32 1.49 -2.68 -4.05 -
Zm00001d011327 (GRMZM2G085068)
-0.74 -2.27 - - -1.2 - - - - - -0.34 -1.14 - - -2.71 -6.7 - 1.49 4.57 -1.6 - - - - -2.22 - - -2.59 - 2.28 - 0.47 -4.86 -0.33 - -4.89 -
Zm00001d014840 (GRMZM2G064360)
- -10.93 -11.12 - -4.07 -7.84 -6.16 -6.6 - - -3.33 -4.32 - - -9.32 -10.64 3.32 -4.28 4.71 -10.42 -5.13 -3.4 - -7.62 -8.47 - -7.01 -6.36 - - -6.72 - -9.62 -7.84 -2.49 -3.78 -3.93
Zm00001d016017 (GRMZM2G147210)
- - - 1.01 0.02 - -0.68 -6.72 - - 0.05 0.54 - 0.67 -8.62 0.75 - -7.78 3.68 -9.31 0.55 -3.39 - -1.75 -1.02 2.65 - 0.74 - -1.47 0.2 - 0.56 -7.5 -4.4 -2.71 0.31
Zm00001d016607 (GRMZM2G312871)
-2.73 -1.5 -0.84 -1.87 -0.47 -2.65 -4.63 -0.42 - -4.74 -2.42 -2.48 -3.95 -1.32 -3.44 -0.96 1.58 0.43 3.87 -7.12 0.4 -0.45 0.76 0.68 -1.9 0.71 -1.36 -1.07 -0.22 0.81 -0.2 -3.2 -1.49 -1.0 -1.15 -1.9 -1.98
Zm00001d016773 (GRMZM2G078509)
- - - - - - - - - - - -9.83 - - - -12.76 - 1.6 5.07 -2.16 - - - - -8.82 - - - -2.54 - - - -8.16 - - - -
Zm00001d016901 (GRMZM2G105460)
-7.66 -5.66 0.29 - -1.92 -2.21 -1.51 -1.97 -0.66 -2.89 -2.37 -0.82 -3.49 -4.63 -0.45 -1.35 - 1.42 4.33 -0.2 -1.7 - -2.41 -3.81 -4.05 -4.37 -0.16 -0.84 -0.9 - -1.21 1.53 -0.55 -0.81 -3.31 -2.04 -0.72
Zm00001d017583 (GRMZM2G045675)
-3.73 -1.06 -3.55 -1.34 -1.33 -1.41 -3.38 -1.06 -0.6 -0.66 -5.3 -1.46 0.49 -0.58 0.4 1.36 -0.89 0.34 3.56 -6.87 -1.52 -0.19 - -0.89 -0.33 -1.17 -0.61 -2.56 - -0.47 0.48 -1.61 -2.27 -2.26 1.43 0.13 1.52
-5.7 -5.38 -5.89 1.35 -2.04 -0.78 -0.63 -1.44 - - - -1.72 - -4.75 -3.78 -0.53 0.08 -3.69 3.68 -2.7 0.3 -1.81 - -3.62 -3.09 0.11 -4.1 -3.07 2.2 1.67 -3.38 2.34 -4.18 -5.22 - -0.59 -0.52
Zm00001d018702 (GRMZM2G033014)
- - - - -9.46 - - -5.87 - - - -6.12 - - - -7.46 - 0.32 5.14 -6.31 -8.16 - - -6.58 - - -5.41 -4.01 - - -2.45 - -6.82 -5.55 -6.76 -4.99 -4.35
- - - - - - - - - - - - - - - - - - 3.97 - - - - - - - - - - - - 4.27 0.07 -0.13 - - -
Zm00001d019012 (GRMZM2G346168)
- - - - - - - - - - - - - - - - - - 5.09 1.61 - - - - - - - - - - - - - - - - -
Zm00001d020484 (GRMZM2G022095)
- - - - - - - - - - - - - - - - - - 5.21 - - - - - - - - - - - - - - - - - -
Zm00001d021926 (GRMZM2G435944)
- - - - -5.25 - - - - - - -4.51 - - 0.52 -3.78 - 0.74 5.05 -2.8 - - - - - - - - - - - - - - -0.96 -5.54 -
Zm00001d021934 (GRMZM2G104204)
-3.2 -4.28 -5.68 -2.06 0.17 -7.11 -5.95 -1.67 - - - -5.47 -4.12 -1.59 -2.81 -0.5 0.37 -1.04 2.31 -9.91 1.69 0.76 -2.43 0.94 0.58 -1.96 -3.65 0.34 2.94 1.59 -1.95 1.4 -4.25 0.33 -2.4 -1.77 0.7
- - - - -3.08 -3.18 -3.6 - - - - -3.61 - - - -0.95 -4.88 2.24 4.93 - - - - - - - - -5.69 - - - - -5.99 - -4.15 -3.19 -0.49
- - - - 1.99 - - - - - - - - - - - - - 5.05 - - - - - - - - - - - - - - - - - -
Zm00001d024594 (GRMZM2G172642)
-2.81 -2.27 -2.17 -0.07 -0.64 -3.11 -2.14 -1.44 -1.38 -1.45 -0.59 -1.11 -0.9 -0.17 -0.86 -0.78 -0.25 0.51 3.87 -10.36 -0.25 -1.59 -1.45 -0.9 -0.85 -2.12 -0.1 -1.47 -0.78 2.37 -1.17 -1.94 -3.96 -1.11 -0.86 -0.71 -1.2
Zm00001d024595 (GRMZM2G077317)
-6.79 -5.66 -2.73 0.99 -0.99 -2.62 -1.47 -2.2 - -7.34 0.1 -2.03 -3.72 -1.2 -7.35 -0.3 0.78 -2.62 3.89 - -0.84 -0.12 -0.91 -3.39 -1.22 -0.07 -0.3 -2.35 - 2.9 -1.35 -2.04 -4.69 -4.96 -4.95 -0.0 -0.85
Zm00001d025162 (GRMZM2G152860)
- - - - -2.31 - - - 0.61 - - -3.48 - - - -1.68 - - 5.02 -1.09 -0.19 - - - -2.17 - - -0.85 - - - - -1.33 - - - -
- - -2.63 - -0.88 - - - - - -0.08 -2.22 - -1.62 -4.51 -1.19 - - 4.84 -4.79 -2.03 - - - - -0.83 - 1.67 - - - - 0.72 - - - -
Zm00001d028900 (GRMZM2G121957)
- - -1.85 -2.08 -0.39 -5.85 -5.82 -4.51 -4.95 -1.14 - -1.8 - -0.15 -3.2 -1.97 -1.9 1.89 4.71 -4.57 -2.41 -2.22 - - -6.06 - - -4.53 0.41 - 0.06 - -3.3 -4.85 -7.29 -1.57 -5.46
Zm00001d030801 (GRMZM2G179121)
- - - - -6.83 - -6.92 - - - - -8.1 - -5.49 -8.4 -6.56 - 1.67 4.94 -5.83 - - - - - - - -3.48 - - - 1.58 -5.09 -4.58 - -9.78 -
Zm00001d033140 (GRMZM2G075330)
- - -3.49 3.16 -3.69 1.32 1.78 1.07 - - 2.38 -1.24 - - -3.63 -2.26 -3.4 - 3.69 -6.19 -5.2 - - - -3.52 - - - - - - - -1.7 - -6.79 -1.45 -3.39
Zm00001d035033 (GRMZM2G370188)
-2.76 -1.63 -1.14 -1.93 -1.08 -5.65 1.04 -1.73 -1.69 -0.81 -0.92 -1.25 -2.99 - -1.7 -1.01 -0.45 1.75 4.06 -4.53 -0.28 -1.27 0.41 -0.46 -1.16 - -2.11 0.1 - 0.03 -0.59 - -0.81 -2.43 -4.62 0.48 -1.1
- - - - - - - - - - - - - - - -1.25 - - 3.57 4.53 - - - - - - - - - - - - - - - 0.64 -
- - - - -3.29 - - - - - - -9.03 - - - -3.72 - - 5.2 - - - - - - - - - - - - - - - - - -
- - - - 0.33 - - - - - - -3.75 - - - -0.79 - - 5.13 - - - - - - - - - - - - - - - - - -
- - - - -0.98 - - - - - - 0.93 - - - 1.45 - - 4.2 -0.02 - - - - 1.56 - - -0.23 - - - - - - 1.73 2.43 -
- - -4.49 1.8 0.32 -3.36 -2.69 -4.32 - - 0.05 -0.62 - -2.53 -4.57 -0.02 -0.09 -0.05 3.96 -4.78 -0.38 -0.97 -6.8 -2.79 -1.45 1.22 -2.85 -0.41 - 1.11 -0.67 - 1.27 - -2.47 -1.35 -0.48
- - - - - - - - - - - -12.0 - - - -7.0 - 2.41 4.98 - - - - - - - - - - - - - - -8.14 - -10.47 -
Zm00001d036865 (GRMZM2G115624)
- - - - - - - - - - - -8.79 - - - -7.04 - 2.12 5.02 -8.1 - - -2.31 - - - - - - - - - - - - - -
Zm00001d037739 (GRMZM2G124225)
- - - - -3.12 -1.81 -0.34 -3.24 - - - -1.47 - - - -1.93 -4.21 2.32 4.31 2.85 - -3.13 - -5.1 -0.85 - - -4.47 - - - - -6.32 -5.33 -4.59 -2.21 0.9
-7.49 - -0.35 -0.85 -2.23 -1.58 -1.59 - -3.83 -5.57 - -3.31 -2.53 -1.66 -1.47 -0.54 -3.42 1.34 3.83 -1.23 -0.85 -0.03 -5.26 -3.46 0.37 - -0.85 -0.45 - - 0.29 3.11 -1.22 -0.88 -2.4 -1.97 -1.76
Zm00001d037998 (GRMZM2G093660)
- - - - -8.26 -3.92 -5.47 - -2.37 -2.75 -0.31 -2.03 - - -2.21 -3.1 -2.92 2.85 4.76 -6.25 - - - - -4.1 - - - - - -1.95 - - - - -1.53 -4.49
Zm00001d037999 (GRMZM2G093647)
- - - - -2.87 - - - - - - -9.69 - - - -2.63 - 2.18 4.92 -4.94 - - 0.59 - - - -3.38 - - - -2.96 - -4.38 - - -8.66 -
Zm00001d038889 (GRMZM2G361986)
- - - - -3.05 - - - - - -2.39 -8.54 - - - -5.59 -2.63 2.1 4.83 -0.79 0.74 0.32 - - -3.58 - - -4.49 - - - - - -5.01 - -5.64 -3.3
Zm00001d039983 (GRMZM2G414879)
- - - - - - - - - - - - - - - -8.26 - 2.29 4.86 -0.98 - - - - - - - - 1.39 - - - - - - - -
- - - - -4.1 3.08 - 0.42 - - - -3.47 - - - -1.02 - - 4.64 -1.94 - - - - - - - - - - - - -0.41 - - - -0.98
- - - - - - - - - - - - - - - -2.05 - - 4.65 - - - - - - - - - - - - - - 3.53 - - -
- - - - -2.05 - - - - - - -0.39 - - - -2.01 0.16 1.23 4.47 - - - - - 0.86 - - - - - - - - - 2.49 -0.06 0.77
Zm00001d042409 (GRMZM2G037023)
-3.72 - -4.81 - -3.58 -4.91 -7.3 -2.93 - -3.77 -4.96 -4.11 -0.62 -4.19 -4.32 -3.11 -1.36 2.26 4.23 -1.69 -1.37 -1.34 -0.9 -2.7 -2.06 -3.56 - 0.49 - 1.56 -2.87 1.24 0.97 -0.51 -6.64 -4.45 -7.18
- - - - -0.74 - - - - - - -1.85 - - - 1.37 - - 4.17 -3.34 2.45 0.68 - - - 1.43 - 0.52 - 1.11 -0.31 - -2.05 -1.37 -1.29 -2.42 -
1.95 -2.77 - - -0.27 -2.06 - - - - - 0.72 - - -4.31 -1.72 - 0.92 4.21 -1.87 -2.39 -0.96 2.48 - - - - - - - - - -3.75 - -4.35 -1.3 1.28
1.78 -3.61 - -0.47 -0.02 0.04 -5.78 - - - -3.1 -1.14 -3.14 - -5.61 -3.77 -3.07 1.14 4.53 -2.25 -3.71 - 0.26 -5.64 -4.3 0.76 - -4.03 - -2.17 - - -4.71 -5.67 -5.6 -0.72 -1.44
- - - - - 0.98 0.62 - - - - -1.31 - - - 0.17 - - 4.83 - -0.31 - - - - - - - - - - - -1.25 - - -0.61 0.65
Zm00001d045256 (GRMZM2G077964)
- - - - -8.91 - -7.52 -2.93 - - -3.32 -3.98 -4.75 - -6.61 -4.62 -5.17 -0.17 5.13 - -5.88 - -1.27 - - -5.63 - - - -2.68 - - -6.17 - - -9.13 -3.85
- - -2.07 -1.06 -2.21 - -2.26 0.52 -1.17 -1.34 - -1.19 -2.11 - 0.83 -1.65 0.37 1.27 3.51 -2.71 -0.09 -2.49 - 2.6 2.86 - - -1.17 - - - - -3.28 -3.83 -2.68 -1.55 -
- - - - -1.43 3.22 0.52 - - - - -2.22 - 0.91 - 0.09 - 0.21 2.86 - - - - - 3.53 - - -1.75 - - - - -2.4 - - 1.16 -
- - - 3.09 -2.09 -4.5 - -3.64 - - - -3.59 - - -2.76 -0.87 - -1.46 3.33 - -3.95 -0.53 - - -3.85 - - -4.27 - 3.85 -0.36 - -4.21 - -1.14 -2.93 -3.0
Zm00001d047755 (GRMZM2G145451)
-0.87 0.57 -0.25 -0.42 -0.46 -0.9 -1.46 -0.76 -1.02 -1.08 -0.74 -0.75 -0.84 0.01 -0.8 -0.05 0.47 0.79 2.87 -2.69 -0.52 -0.57 -1.79 -0.14 -0.56 0.03 0.44 0.44 -2.62 0.92 0.34 -0.86 -0.1 0.44 -0.41 -0.32 -0.69
- - - - -7.1 - 3.49 - - - - -5.37 - - - -3.88 - 0.25 4.57 - - - - - -2.11 - - - - - - - - - -4.43 -1.38 -
- - - - -2.43 - - - - - - -2.17 - - - -1.86 - - 4.95 - - 2.2 - - -2.02 - - -1.31 - - - - -2.29 - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.