Heatmap: Cluster_113 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Root (elongation zone)
Root (meristematic zone)
Root (stele)
Root (tip)
Root
Leaf (3rd leaf of seedling)
Leaf (3rd leaf)
Leaf (apex)
Leaf (bundle sheath)
Leaf (mesophyll)
Leaf (Seedling)
Leaf
Internode
Stalks
Shoot
Shoot (apex)
Tassels (primordia)
Tassels
Anther
Pollen
Ear (immature)
Ear (inflorescence)
Ear (leaf)
Ear (primordia)
Ear
Silks
Kernels (germinating)
Kernels
Maternal transfer zone
Nucellus
Embryo
Endosperm (transfer layer)
Endosperm
Seeds
Coleoptyle (5 day)
Seedling
Whole Plant
- - - - 1.65 - - - - - - -4.11 - - - 0.88 - - - - - 0.94 - - - - - - 4.91 - - - - - - - -
-1.42 - 0.62 - -1.63 -2.49 3.89 0.2 -2.03 -3.81 - -2.72 - - -3.56 0.69 -0.31 -0.52 -1.92 -0.59 -0.85 2.22 - -0.91 -1.39 -0.81 -0.79 0.32 - 1.22 0.22 - -1.67 -1.08 -6.88 -1.45 -0.33
Zm00001d006144 (GRMZM2G170253)
- - - - - - - - - - - - - - - 5.21 - - - - - - - - - - - - - - - - - - - - -
Zm00001d007236 (GRMZM2G399598)
- -1.74 - - -2.14 - - - - - - -1.92 - - - 1.28 -1.85 1.54 -0.65 2.71 - - - - - - 4.21 1.81 - - - - 0.36 - -5.0 -5.14 -
- - - - -2.48 - - - - - - -4.79 - - - 0.02 - 0.04 - 0.58 - - - - - - 4.69 2.85 - - - - -1.89 - - - -
Zm00001d007729 (GRMZM2G140665)
- - - - -3.17 - - - -3.29 -2.47 - -2.33 4.76 -0.1 -2.12 2.58 - -2.49 -6.26 - -2.52 -2.78 - - -3.01 - - - - - - - - -5.3 - 0.43 -3.48
- - - - - - - - - - - -0.5 - 2.62 - 3.79 - - 3.52 0.48 - - - - - - - - - - - - 1.81 - - - -
Zm00001d008697 (GRMZM2G143278)
- - - 4.68 1.75 - - - - - - - - - -2.56 2.04 0.15 - - - - - - - - - - - - - - - 1.37 - - - -
- - - - -0.87 - - - - - 2.7 0.13 - - -2.06 0.93 -0.34 - 4.14 - - - - - - - - 0.06 - - - - 2.21 0.99 -3.22 -0.98 -
- - - - -1.0 - - - - - - -0.53 - - - 1.64 - - 3.34 - -2.25 4.26 - - - - - - - - - - -2.75 -0.51 - 0.56 -0.32
- - - - 0.69 - - - - - - 2.45 - - - 2.82 - - - 4.08 - - - - - - - 2.57 - - - - - - - - -
- - - - - - - - - - - 4.64 - - - 3.59 - - - - - - - - - - - - - - - - - - - - -
- - - - -0.25 -0.8 - - - - - -1.52 - - - 1.93 - - 0.08 0.14 - - - 0.21 - - - - 4.76 - - - -1.19 - - -2.59 -1.11
- - -1.9 - 0.15 - 1.93 -0.92 - - -0.05 -0.37 - - -5.07 1.17 - 2.98 -0.41 - 0.09 2.36 - -1.23 2.62 - - - - - 0.94 1.03 -1.14 -3.71 -1.6 0.05 -
Zm00001d014393 (GRMZM2G370357)
-2.79 - -2.85 - -0.75 -3.95 - -2.95 -1.5 -0.68 2.18 -1.99 - -0.85 -2.63 4.69 -3.06 - -1.58 - -0.62 - - -1.34 - - - -1.32 - - -1.16 - -1.46 -0.48 -5.94 -3.05 -3.27
Zm00001d016288 (GRMZM5G852073)
- - 1.45 3.49 -0.58 0.72 -2.25 - - - - -0.01 - - -0.54 2.26 - - -1.62 -0.31 1.44 - - - - - - - - - - 1.44 0.29 2.51 -3.83 -2.19 -1.9
Zm00001d020113 (GRMZM2G054048)
-2.59 -2.65 -2.75 - 1.35 0.59 -3.15 -3.25 - - 1.95 -0.2 -1.24 1.26 -3.53 2.16 0.74 -5.19 -1.58 -2.5 -1.42 1.84 0.16 - -2.25 -0.4 -1.03 1.78 - - -1.18 -2.18 1.36 -0.21 0.72 0.91 -1.7
-2.65 - - - 1.15 3.25 -2.46 - - -1.27 -0.41 1.49 - -0.9 -0.02 2.39 - -0.54 -0.57 -1.65 -3.48 2.99 - - 1.08 - -0.71 -4.48 - - - - - - 0.28 -2.18 -1.97
Zm00001d022036 (GRMZM2G049882)
- - -5.18 - -4.69 -1.88 -2.2 - 0.28 -0.64 -2.35 1.0 - 3.17 0.85 2.31 - 2.94 -6.93 -2.36 - -3.57 0.88 - 0.97 - - 1.23 - - - - -5.5 0.73 -5.0 -0.71 -2.17
-1.04 0.19 0.38 - -0.33 - -2.21 -1.78 - - - -1.91 - -0.52 -2.37 1.64 1.62 -1.2 0.89 -3.04 1.59 - - -0.07 -1.72 - - -1.35 - - 0.24 2.29 -1.29 -0.73 3.05 -1.52 1.41
- - - - - 3.94 3.0 - - - - 0.91 - - - 2.81 - - - 1.79 - - - - - - - - - - - - - - - 0.43 -
Zm00001d026006 (GRMZM2G018464)
- - 1.28 - -1.58 - - - - - - 0.92 - 3.32 - 1.6 - - 3.05 -0.53 - - - - 0.25 - 2.35 1.79 - - - - -4.02 - - -1.94 -1.71
Zm00001d028060 (GRMZM2G307084)
- - - - -1.13 - - - - - - 3.87 - - - 4.37 - - - -0.27 - - - - - - - - - - - - - - - -1.46 -
- - - - -0.58 - - - - - 2.19 -3.43 - - - 3.66 - - 1.7 -1.67 2.69 2.55 - 0.33 - - - - - - 0.39 - - - - -0.78 -
Zm00001d029384 (GRMZM2G370519)
- - - - 1.58 0.02 - - - - 3.86 -0.95 - - -3.37 1.3 - - -3.62 - - - - - - - - - - - - - -3.33 - -2.33 -0.9 3.86
- - 1.18 - 2.82 - -2.58 - -0.83 - - 0.28 - - - 4.3 - - -2.96 -4.33 - - - - - - - -1.74 - - - - - -2.06 - -2.96 2.4
Zm00001d030419 (GRMZM2G126913)
-1.94 0.39 0.72 - -0.11 - - - - -0.35 2.73 -0.55 - 1.34 -2.87 1.19 - - -1.74 - 0.44 - - 1.48 0.55 2.81 0.67 -1.27 - - -1.29 - 0.18 -1.3 0.55 0.11 -1.42
- -4.17 - -0.9 1.69 0.79 - -0.61 - - 1.75 1.38 - -1.26 -4.86 2.17 -0.86 -2.85 -1.49 -5.4 - - 1.39 1.09 -1.07 1.38 - 1.73 - - -3.08 - -0.29 - 2.08 0.07 0.54
Zm00001d031685 (GRMZM2G053117)
-4.9 -6.1 1.23 - 1.28 -2.75 0.29 -2.75 -5.71 - -1.91 1.04 - -5.01 -5.58 2.63 -0.84 -3.58 -0.67 -4.34 0.95 -1.22 -4.67 -1.72 -4.94 0.68 2.91 1.53 - - -2.5 0.29 0.71 -0.15 0.6 -0.83 -
- - - - - - - - - - - - - - - 0.9 - - - - - - - - - - - 3.74 - - - - - 4.1 2.21 - -
Zm00001d032052 (GRMZM2G088980)
- - 0.24 3.08 -1.69 - 1.31 - - - 2.04 -2.23 - - - 0.86 - - - - - - 3.65 -3.47 - - - -4.66 - - - - -3.17 -1.74 -2.79 -5.51 2.38
- - - - 3.81 - - - - - - - - - - 4.52 - - - - - - - - - - - - - - - - - - - - -
- - - - - - 3.79 - - - - 2.69 - - - 3.69 - - - 0.49 - - - - - - - - - - - - - - 1.28 - -
- - - - 2.45 - - - - - - -0.92 - -1.38 - 2.97 -0.29 - -3.97 1.23 -3.76 -0.54 - - - 3.1 - - - - - - 0.96 -3.71 3.03 - -
Zm00001d033685 (GRMZM2G386856)
- - - - - - - - - - - 4.78 - - - 3.26 - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - 0.59 - - - 3.6 - - 3.45 3.64 - - - - - - - - - - - - - - - - -
- - - - 0.93 0.42 - - - 1.72 - 0.73 - - -1.41 4.52 - - - -0.63 - - - - - - - -1.03 - - - - - - -0.46 1.87 -
- - - - - - - - - - - - - - - 0.98 3.68 - - - - 4.46 - - - - - - - - - - - - - -2.15 -
Zm00001d037851 (GRMZM2G046286)
- - - - 1.67 - - - - - - -2.07 - - - 4.77 - - -0.22 1.81 - - - - - - - - - - -0.39 - - - - -1.83 -0.34
-5.01 - 3.42 3.31 2.19 -2.18 -3.36 - -3.82 -3.63 -1.73 -0.41 1.12 - -5.06 1.85 - - - -4.12 - -2.09 -1.45 - -1.84 -2.93 -2.61 -1.79 - - -3.43 1.02 - -4.68 -2.91 -1.3 -2.38
- - - - -3.36 - - -1.37 - - 0.9 -2.78 - - -5.0 -0.04 -0.45 2.56 -1.86 3.96 1.61 1.08 - 0.33 1.67 - - -2.35 - - -0.18 - -3.06 -5.1 -3.34 -4.33 -
-2.97 - -1.67 - -1.92 - 4.72 -2.28 - - - -3.62 - - - 1.11 1.94 -1.75 - -0.29 - - - - - - - -1.69 - - -0.33 - - -3.48 -5.12 - 0.36
Zm00001d042594 (GRMZM2G007053)
- - -4.9 2.29 0.23 1.46 1.76 -0.16 - - -0.08 0.87 - 2.93 -6.72 2.42 -6.7 -5.99 - -2.18 -0.47 -2.71 - - -3.39 1.2 - -1.73 0.93 - -1.73 - -2.1 - -5.94 -0.17 -0.05
- - - - - - - - - - - 1.92 - - - 1.46 - 2.92 - - - - - 1.71 - 3.87 - 2.33 - - - - - - - - -
- - 1.26 - 0.54 - - - - - 2.7 0.16 - - -1.93 0.52 1.1 - 0.91 - -0.25 - - -0.06 - - - -0.62 - - - - - 2.15 3.45 0.98 -
Zm00001d048782 (GRMZM2G089830)
- - - - 0.74 - - - - - - -0.78 - - -1.27 1.23 - - 0.47 -0.06 - - - 1.74 - - 4.31 1.16 - - - - 2.09 - - - -
- - - - - - - - - - - - - - - 5.21 - - - - - - - - - - - - - - - - - - - - -
- - - - 0.24 0.03 0.6 - - - - 1.47 - 2.12 - 3.9 1.41 - 2.42 -0.02 - - - - - - - -0.42 - - - - -1.19 - -1.95 -0.38 -
- - - 4.6 -0.74 - -0.23 - - - - -2.14 - - - 2.96 - - - - - - - - - - 1.52 - - - - - -1.06 - - - -
Zm00001d050635 (GRMZM2G162388)
-8.79 -9.89 -1.54 -0.73 0.53 0.82 1.01 -4.89 -11.08 - 1.43 -0.4 -7.73 0.56 -8.89 2.76 -3.99 -4.48 2.79 -1.73 -1.86 0.91 0.5 -6.28 -0.34 -8.35 0.5 -2.16 - -4.13 -1.15 -6.67 -0.32 -9.4 -9.64 -1.23 2.02
-4.87 - - - -0.75 - - - - - -1.64 -1.55 - - -6.71 2.35 -4.36 -3.36 1.16 -1.81 - - - - -3.62 - - -0.22 - - - - 0.38 0.81 -4.7 -3.82 4.57
-1.99 -4.43 -0.8 -2.85 0.3 -0.61 -0.75 -1.07 -0.83 -1.39 -2.66 -1.49 0.43 -5.03 -0.34 1.11 -0.67 0.27 0.6 -2.31 0.98 0.24 2.49 0.18 0.22 -0.83 -3.53 0.39 - 1.44 -2.12 -0.21 -0.32 -0.58 0.09 -0.7 1.9

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.