Heatmap: Cluster_321 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Immature female cone
Immature male cones
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Wood
Bark
Bark, healthy
S1 xylem tracheids
S1 whole sections
S2 ray cells
S2 xylem tracheids
S2 whole sections
Dead late wood
Phloem and cambium
Dear early and late wood
Bark, root and butt rot
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Light, 1 hour
Light, 3 hours
Light, 5 hours
Light, 7 hours
Light, 9 hours
Light, 13 hours
Light, 15 hours
Darkness, 1 hour
Darkness, 3 hours
Darkness, 5 hours
Darkness, 7 hours
Darkness, 11 hours
Vegetative buds
Female buds
Male buds
Buds
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
Somatic embryogenic cell line
-0.04 -0.61 - -2.48 - - - -0.4 0.55 0.35 -1.52 0.23 0.81 -1.14 0.57 - - -3.24 0.13 -4.71 -1.48 -0.59 -3.06 -4.77 -2.82 1.47 -1.49 -0.96 -2.31 -2.22 -0.1 -0.17 0.07 0.74 -0.27 -0.33 -0.37 -0.02 0.39 0.01 0.1 -0.16 1.41 1.53 1.76 -0.49 -1.56 0.47 0.37 -1.61 -1.89 -0.8 -1.61 -1.57 -0.22 3.49
- 2.86 - - - - - - - - - 2.67 1.63 - 0.24 - - - - - - - - - - - - - - - - - - - - - - - - 0.77 - - - - - - - - - - - - - - - 5.19
- 1.57 - - - 3.11 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.99 1.59 - - - - - - 5.3
0.94 0.03 - - - - - - - - - - - -2.24 - - - - - - - -1.24 - - - 0.37 - - - - - - - - - - - - - - - - - - - - -0.1 1.03 0.24 - - -2.74 - -1.86 -0.4 5.52
-2.82 2.47 -2.13 - -5.2 -1.82 - -3.11 -6.09 - - - - - -4.61 - - - - - -1.9 - - - - -5.97 - - - - - - - - - -4.88 - - -4.99 -4.46 - - - - - -4.8 - -2.09 -3.91 - - - - - - 5.61
-4.61 - -2.6 1.46 -5.28 -3.92 -2.55 3.03 -0.78 -0.88 - 0.11 -1.86 -0.69 0.85 -5.09 - - -0.73 -7.34 1.69 -3.4 0.6 - - -4.24 - - - - - -6.77 - -6.57 - - -7.97 -7.85 - - -7.72 -6.42 1.06 1.67 2.22 -0.87 -1.78 0.81 1.93 -4.81 -3.56 -2.65 -4.68 -4.56 -2.88 4.12
-1.17 3.24 - -0.15 - - - 2.12 -2.67 0.9 - 0.14 - - -0.02 - - - -0.25 - 0.21 0.08 1.43 - - -2.38 - - - - -1.59 - - - - -2.53 - - -2.18 - -1.49 - -1.56 0.36 1.5 - -0.29 -1.64 -0.94 0.7 1.11 1.03 0.1 -0.23 0.93 3.8
- - - - 2.73 - 1.93 - -2.53 - - - 1.76 2.63 0.74 - - - -2.08 - - - - - - -2.06 - - - - 0.05 - - 1.11 - - -0.08 -0.16 - - 0.29 0.24 -1.22 - - - - -2.61 -1.78 - - - - - - 4.66
- - - - - - - - -3.65 0.45 -1.38 -1.15 0.48 0.24 - - - - 0.6 - - - -0.29 - - 0.7 - - - - -1.51 - 0.26 - -1.2 - 0.31 -1.65 - 0.96 - - - - - 1.04 - 3.05 3.22 - - - - - - 4.46
-1.17 1.32 -4.15 - -7.0 -2.68 -1.72 -1.41 -3.51 0.18 -0.3 -0.63 -0.59 -1.84 -1.26 -1.08 - -3.02 0.17 -3.05 1.28 -1.76 1.55 -3.28 -3.01 0.46 -1.59 -5.28 -5.41 - -2.03 -2.05 -0.79 -1.19 0.63 -1.53 -1.9 0.53 -0.98 0.13 -2.26 -1.68 -5.75 -3.29 -5.65 3.6 0.21 0.98 1.0 -2.0 -2.9 -3.93 - -5.49 -0.56 3.68
0.88 - - - - - - - -1.6 -2.36 - - - - - - - - 1.16 -1.42 - - - -1.48 -1.54 1.03 - - - -1.52 - - - - - - - - - - - - 1.44 0.02 -0.92 - - 0.13 0.34 2.67 1.21 1.7 2.5 2.98 1.32 3.74
-0.02 -0.13 - 2.61 - - - -0.93 0.41 - - - 0.86 - -1.19 - - - - - - 0.06 - - - -1.81 - - - - - - - - - - - - - - - - - - 3.0 - - 1.42 0.8 -0.07 0.02 1.34 - -0.25 0.12 4.57
-0.37 -1.06 - -2.09 -4.4 0.95 - 0.84 -4.29 -1.63 -1.99 0.57 0.47 0.95 1.06 - - - -0.86 - -0.54 0.12 0.14 -0.98 -2.03 -0.69 - -1.97 -2.11 - -5.11 - - - -3.66 -4.01 - - - - - - 2.58 1.85 2.4 1.56 -0.45 -2.27 -0.55 -2.5 -2.4 -1.73 -3.88 -2.4 -0.8 4.07
- - - - - - - - - 1.96 - - - - - - - 4.01 1.28 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.07
1.29 - - - - - - - - - - - - - - - - - 1.25 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.27 - - - 5.64
- - -0.62 -5.56 -2.51 -3.61 - -3.5 -1.89 -0.97 -6.27 -5.89 -4.88 -5.55 - -0.32 - -2.27 -1.04 -5.15 - -2.49 -2.22 -5.21 -1.59 -5.65 -5.1 -1.3 -2.76 - -5.75 - - - -5.89 -4.95 - - -6.36 - -6.21 -6.07 1.06 -2.38 0.62 0.52 -2.16 1.6 -1.18 1.4 -0.2 -2.06 2.43 2.43 0.39 4.72
- 4.51 - - - - - - -4.48 -2.45 - - - - - - - - -0.9 - - - - - - - - - - - -1.88 - - - - - - - - - - - - - - - - -1.53 -0.48 - - - -3.08 - - 4.96
2.7 1.0 - - - - - - - - - 0.39 - - -0.04 - - - -1.82 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.49
2.08 - - - - - - - - - - - - - - - - - - - - - - - - -3.46 - - - - - - - - - - - - - - - - - - - 0.1 - - - - 0.26 - - - - 5.63
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2.03 2.02 - - - - - - 5.58
-2.82 -1.93 - - - - - - -0.35 -1.11 2.51 0.98 -2.56 - 1.24 - - - -0.49 - -0.41 - - - - - - - - - -3.41 -1.21 -1.76 -0.99 -3.96 - -2.97 -3.99 -3.54 -0.71 -1.81 -3.7 -3.93 -4.77 - - -2.64 1.63 1.57 - - - - - - 5.07
- - - - - - - - -0.73 - - - - - - - - - - - - - - - - 1.07 - - - - 0.76 1.61 0.96 - 0.9 - 1.03 - -0.94 -1.05 0.88 -0.65 - - - - - 2.98 3.27 - -0.72 0.85 - -1.0 -0.67 4.18
- - - - - - - - - - - - - - - - - - - - - - - - - 0.63 - - - - - - - - - - - - - - - - - - - - - 1.16 - - - - - - - 5.71
0.21 - -2.82 -0.32 - - - -0.09 -5.57 -6.04 - -2.8 -2.46 -1.24 -2.79 - - - -2.54 0.58 -1.12 -1.47 -2.45 -4.01 -0.62 0.25 -0.82 -0.91 -0.94 -1.09 -2.8 0.13 -0.23 -1.13 -2.03 -1.29 -1.19 -2.0 - -3.36 -1.81 -1.71 2.94 1.58 -0.76 0.35 -1.36 0.87 1.33 - - -4.48 - - -4.36 4.55
- - - - 5.02 - - - -0.02 1.79 - - - - 3.16 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2.31 - - - - - 2.41 - - - -
-0.6 0.88 - - - - - - -4.79 -0.28 - -1.36 1.66 - -0.76 - - - -1.32 - - - - - - - - - - - - - - - - - - - - - - - - -2.54 - - - - - - -1.55 - -1.67 - - 5.56
- - - - - - - -1.6 -1.24 0.85 - - - - - - - - 0.4 - - - - - - -4.36 - - - - -0.21 -0.18 -0.91 0.25 -0.37 0.23 -0.44 -0.21 0.15 -1.04 -0.45 -1.11 -2.13 -2.99 - - - 0.5 -0.12 1.11 0.85 0.79 0.9 0.43 1.77 4.77
- - - - - - - - - - - - - - - - - - - - - - - - - -2.93 - - - - - - - - - - - - - - - - - - - - - 0.33 -0.78 - - - - - - 5.76
- - - - - - - - -2.99 1.09 0.24 - 0.56 - -0.79 - - - 1.96 - - - - - - -2.14 - - - - - - 0.41 - -0.81 - - - 0.88 - - - - - - - - 1.32 1.53 - - -0.61 - - - 5.19
- -2.34 - -1.11 0.41 -1.34 - - -6.42 -0.63 - -1.97 -1.91 -3.59 -2.37 - - - 0.7 - -2.13 -3.19 - - - -4.77 - - - - -4.03 - - - - - - - - - -2.11 - - - - - - - - - - - - - -3.12 5.64
-1.38 -1.49 - - -4.77 - - -4.29 0.17 2.27 - -3.11 - - - - - - 1.46 -1.94 -1.7 -2.76 -1.7 -0.23 1.5 -2.51 0.17 -0.23 -0.73 0.56 -5.47 -4.43 -2.69 - -4.52 -4.44 - - - -2.83 - -2.29 -0.76 -0.75 -1.55 -0.56 - 0.79 1.3 - - - -4.6 - - 4.92
- - - - - - - - -3.8 -0.8 - 0.96 -0.05 - - - - - -1.48 - - - - - - 0.77 - - - - - - - - - - - 0.53 - - -0.32 - -1.38 - -0.29 - - - -1.87 - -0.13 - 0.72 - - 5.46
- - - - - - - - -5.78 0.88 - -0.57 -2.11 - - - - -1.52 1.9 - - - - - - -5.12 - - - - 1.72 -0.37 -1.42 0.11 0.59 1.27 - 0.89 1.31 1.11 -2.0 1.14 - -1.64 -2.39 - - - -5.13 - - - - - -2.33 4.91
-1.82 3.24 - -5.88 - - - -6.21 -3.44 -6.08 -5.44 -6.16 -4.55 -6.81 - - - - -7.58 - 0.28 -5.34 -1.31 - - -5.71 - - - - 0.05 0.41 -0.14 -0.4 -1.1 -0.66 -0.45 -1.72 -1.7 -2.52 -0.98 -0.6 0.13 -3.6 -4.57 -1.6 - -2.66 -0.75 -3.68 -4.38 -4.76 -3.79 -6.63 -6.22 5.09
-1.87 0.6 - - - - - -3.68 -3.49 -0.88 -0.32 -1.02 -0.61 -0.94 -1.01 - - - 0.28 -3.83 1.68 -1.03 1.54 - -2.95 0.42 - - -3.03 - -5.05 -3.78 -3.72 -2.78 -3.01 - -3.02 -3.04 - - -3.76 - - -2.7 -3.26 2.98 -0.37 2.8 2.83 -3.01 -2.7 - - - -0.42 4.02
- - - - - - - - 1.0 -0.66 0.51 0.86 0.08 -2.11 -0.33 - - - -0.37 0.11 - - 0.93 1.55 - -2.45 - - - - 1.0 0.89 0.69 0.57 1.46 0.88 1.48 1.5 1.94 1.73 0.64 -1.62 -0.34 -0.01 -0.72 - - 0.03 -0.83 - - - - -0.81 - 3.38
-0.23 -3.15 - -1.34 - - 1.13 0.87 -1.28 -1.82 - - - - - - - - -1.6 - -1.73 -1.47 0.38 - -3.11 -7.71 - - - - - - - -3.82 - -3.17 -4.19 -2.46 -2.49 -3.31 -2.99 -2.24 -0.19 -0.15 0.9 -2.91 -1.27 0.65 1.02 - -3.99 -1.98 - - -0.32 5.23
- - - - - - - - - - - - 4.22 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.22
3.65 -0.16 - -0.53 -1.44 - - 1.09 -1.31 -1.21 - - 0.21 - - - - - -0.56 -1.2 2.36 2.82 1.04 - 0.87 -1.06 - -0.07 1.79 - - - - - - - - - - - - - 1.4 -2.0 0.56 - 0.13 - -3.79 - - - -0.12 0.46 - 2.91
- - - - - - - - - - - - - - - - - - - - - - - - - -4.03 0.46 - - 0.32 -0.42 - 0.44 - 0.41 -0.68 -0.25 - 1.63 0.69 - - - - - - - -1.44 -2.25 1.87 0.37 - 1.89 3.49 0.52 4.44
2.99 -0.21 0.01 -2.55 -3.84 - - 0.36 -1.83 -1.45 -1.81 -1.52 0.44 1.6 -0.65 - - - 0.07 -2.19 1.95 0.13 -0.2 -1.12 - 0.88 - - - -3.16 -0.74 -0.07 0.62 -0.2 0.22 0.13 -1.55 -0.3 -1.31 -0.01 -0.38 -0.22 -2.6 -1.41 -2.49 1.45 2.47 0.35 0.25 -4.08 -4.05 - - -3.16 - 2.76
-1.1 4.11 - - - - - - -3.78 - - - - - - - - - - - -1.0 - -1.0 - - -5.34 - - - - -1.16 0.96 0.78 -0.15 -2.22 -2.07 -0.2 - -1.85 - - -0.44 -0.6 -2.62 - - - -1.55 -2.08 -2.42 - - - - - 4.82
0.58 - - - - - - - - - - - - - - - - - - - 3.84 - - - - -5.83 - - - - - - - - - - - - - - - - 0.07 - - 1.71 - 2.87 2.92 - - - - - - 4.39
- - - - - - - - - - - -1.42 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.44 1.7 - - - - - - 5.63
0.16 -4.82 - - -7.94 - - -3.55 -1.01 -0.91 - - - - - - - - 1.16 -0.26 -5.59 2.94 -4.28 -2.07 1.3 1.48 0.39 0.44 -0.41 0.12 -2.38 -1.21 -1.94 -0.61 -1.14 -2.21 -2.56 -1.53 -0.41 -1.08 -1.8 -1.58 -5.37 -7.06 - -2.83 3.14 -4.35 -3.5 0.38 0.08 -5.2 -0.59 -1.26 -7.61 3.98
- -0.63 - - - - - -2.92 -2.28 1.1 - - - - - - - - 0.33 -3.95 - -3.07 - - - -3.85 - - -2.26 -2.17 -0.24 -1.48 -2.96 -2.7 -0.59 - -1.88 -1.48 -1.53 -1.75 -0.68 -2.72 -0.87 -0.74 -3.47 1.11 - 0.7 -0.5 1.32 -1.6 -2.09 1.28 2.76 1.03 4.74
- - - - - - - - 1.66 -2.27 - - - - - - - - -1.52 - 0.61 -3.37 - - - -0.74 - - - - -5.11 - - -2.05 - - -6.54 -2.52 - - - - - -2.29 - 3.49 -2.52 -3.34 -2.87 -3.78 - -3.82 - - -4.37 5.23
- - - - - - - - - - - - - 0.04 0.33 - - - - - - - - - - -3.12 - - - - 0.49 - - - 1.59 - - - - 0.22 - - 1.39 - - - - - - 1.36 - - - 0.58 - 5.37
- -0.76 - - - - - 2.64 -2.96 - - - - - - - - - -1.91 - 0.2 1.32 - - - -3.38 - - - - - - -1.63 - - - - - -2.42 - - - -1.34 - - 0.1 - -1.71 0.82 - - - - - -1.52 5.34
- - - - - - - - - - - - - - - - - - - - - - - - - 1.81 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.71
- 0.88 - - - - - - 0.37 0.89 - - - - -1.79 - - - -0.38 - 2.04 - 1.04 - - - - - - - - - - - - - - - - - - - 0.66 0.0 -1.03 -0.41 - -2.0 -2.48 - - - - - - 5.3
- - - - 4.5 - - - -0.0 - - 0.97 3.01 0.35 - - - - - - - - - - - -1.92 - - - - - 0.76 - - - - - - - - - - - - - - - - - - - - - - - 4.26
- - - - - - - - -4.01 -1.17 - - - - - - - - -2.71 - - - - - - -7.55 - - - - - - - - - - - - - -3.44 - - - - - -6.54 - -0.77 -1.35 - - - - - - 5.76
- - - - - - - - - -1.99 - - 1.36 - - - - - -1.1 - - - - - - -4.15 - - - - - -0.38 -0.42 - - -0.24 - - 0.6 -0.11 - -0.09 - - - -0.46 - - - - - - - - - 5.53
-0.33 - - - - - - -0.55 -1.67 -5.09 - - - - - - - - - -0.83 - -0.61 - - -2.73 -0.69 - -2.68 - - - - - -3.25 - -2.79 - - - - - - - - - - 1.99 0.63 1.48 - - - - - -3.48 5.44
-0.63 -0.28 - - - - - -5.96 -0.59 -5.34 - -6.85 - - - - - - -3.74 - -1.97 -7.11 - -2.09 -6.23 -2.79 - - - - -6.14 -5.58 -7.0 -5.47 - -5.18 - - -4.68 -5.39 -5.87 -4.29 - - - - -5.97 - - 2.13 -1.53 -3.8 0.4 0.63 -1.8 5.49
- -5.24 - - - - - - -9.36 - - -5.86 - - - - - - - - - - - - - -9.67 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -6.0 5.81
2.6 -2.3 - - - - - -5.35 0.57 0.01 - - - - - - - - 1.37 0.3 -1.49 2.56 -5.06 -1.33 1.28 1.78 0.89 0.5 -0.75 0.09 -3.94 -3.23 -3.35 -2.53 -3.67 -2.93 -3.21 -3.24 -1.94 -3.19 -3.55 -3.12 - -7.45 - 0.98 3.48 -3.01 -1.98 1.09 -1.44 -4.45 0.41 -0.26 -4.5 2.63
- 4.7 - - - - - - - -3.96 - - - - - - - - -3.81 - - - - - - -5.31 - - - - - - - - - - - - - - - - - - - -1.22 - -5.63 -3.47 - - - - - - 4.87
- 2.48 - - - - - - - 0.16 - - - - 2.46 - - - -0.23 - - - - - - -0.28 - - - - - - - - - - - 0.58 - - - - - - - - - - - - - - 0.52 - - 5.29
2.09 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -3.37 -0.83 - - - - - - 5.67
-0.33 - - -1.7 - - - - 0.71 -2.91 - - -1.08 - - - - - - 2.5 - 0.71 - -0.35 1.18 0.95 4.01 1.24 0.52 0.61 -2.5 - - - - - - - - - - - - -2.27 - -1.09 1.86 - - - - - - - - 3.85
- - - 1.75 0.48 - - 0.03 - - - - - - - - - - - - - - - - - 0.01 - - - - - - -0.67 -0.26 - - - -1.35 -1.02 - -0.42 - - -1.88 -0.74 - - 2.48 2.53 -1.68 -0.78 - -0.79 - 0.76 4.94
- - - - - - - - -9.17 -5.63 - - - - - - - - - - - -4.0 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -4.94 5.8
3.07 - - - - - - - -2.59 -0.32 - - - -0.27 - - - - -0.3 1.27 0.65 0.6 - - 1.07 -0.12 -1.27 1.34 -0.51 -1.5 - - - - - - -4.47 - - -0.77 - - 0.44 - -1.83 -0.63 1.74 0.35 -0.29 -1.56 -2.4 -1.39 -1.59 - -0.73 4.48
- - - - - - - - -6.47 -4.44 - - - - - - - - -2.13 - - - - - - - - - - - - - - - - - - - - - - - - - -5.09 - - -6.72 -7.52 - - - - - - 5.8
- - - - - - - - 1.91 -3.38 - - - - - - - - -2.45 -0.93 -0.77 1.39 - - -0.88 0.7 0.22 0.11 - -0.93 -1.99 - - -7.35 -1.1 - - - - - - - - - - 3.02 - -3.26 -4.57 - - - - - - 5.1
-3.48 -2.0 - - - - - - -1.47 -3.39 - - - - - - - - -3.46 -4.62 -1.79 -4.39 -1.06 - -3.55 -2.07 - - - - -3.62 -3.53 -0.93 -0.26 -1.64 -1.73 -2.17 -1.84 -2.45 -2.14 -1.28 -0.89 -2.74 -4.19 -4.43 0.5 - 1.5 1.4 -2.69 -2.84 -2.88 -2.58 -0.85 - 5.38
- - - - - - - - - - - - - - - - - - -3.81 -0.25 - - - - - -2.06 - 0.11 - - 1.71 2.28 0.51 0.76 1.69 -0.77 1.24 0.97 0.46 -0.78 1.25 0.79 - - - - - 2.61 2.12 - - - - - - 4.16
- -1.75 - - - - - - - - - - - - - - - - -2.48 - - - - - - -2.31 - - - - 2.13 0.21 -0.59 0.83 0.1 0.61 -0.26 1.02 1.5 0.37 2.0 -1.51 - - - - - 2.59 2.02 - - - - - - 4.55

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.