Heatmap: Cluster_356 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Root (elongation zone)
Root (meristematic zone)
Root (stele)
Root (tip)
Root
Leaf (3rd leaf of seedling)
Leaf (3rd leaf)
Leaf (apex)
Leaf (bundle sheath)
Leaf (mesophyll)
Leaf (Seedling)
Leaf
Internode
Stalks
Shoot
Shoot (apex)
Tassels (primordia)
Tassels
Anther
Pollen
Ear (immature)
Ear (inflorescence)
Ear (leaf)
Ear (primordia)
Ear
Silks
Kernels (germinating)
Kernels
Maternal transfer zone
Nucellus
Embryo
Endosperm (transfer layer)
Endosperm
Seeds
Coleoptyle (5 day)
Seedling
Whole Plant
- - - - -4.67 2.44 - - - - 2.29 -0.89 - - - 0.96 3.35 - 0.88 -3.18 - 0.84 - - 0.52 1.78 - - - - - - -2.43 - - 0.23 1.98
Zm00001d005531 (GRMZM2G433150)
- - - - -0.24 1.25 - - - - - 0.28 - - -2.39 0.49 2.71 - -1.34 -1.2 - - - - -1.92 - - -0.12 - 3.7 2.25 - -0.03 0.44 -2.11 1.09 -
- - - - 0.53 -0.6 - - - - 2.59 0.69 - - -0.76 3.19 -1.66 - 2.43 -0.04 - - - - - - -1.04 2.59 - - - - -2.22 - - 1.99 -2.67
Zm00001d008234 (GRMZM5G850556)
- - -1.41 - 0.6 - 2.26 -2.86 - - 0.68 -0.49 - -0.69 -2.14 2.15 0.3 - 1.59 - -0.9 0.27 - -4.25 1.21 - -1.56 2.6 - - 0.26 - 2.41 -0.4 -2.99 -1.8 -2.81
- - - - 0.27 - - 2.37 - - 2.71 -1.36 - - -1.34 2.63 - - 2.27 -1.22 2.58 - - -0.24 - - - -1.62 - - 0.42 - - -1.5 - -3.32 1.57
-2.16 -1.61 0.46 - -1.11 -0.87 -1.11 -0.07 - -4.68 -1.59 -1.24 -0.01 - -1.37 -0.47 2.14 0.08 -0.51 -5.69 0.39 0.55 -4.83 0.52 -0.48 2.17 0.53 0.06 - 2.43 1.01 -0.32 0.4 0.06 -2.56 -0.21 -
- - -1.99 - 0.55 -1.48 -3.65 2.82 - - 2.86 0.16 - 2.32 -3.19 2.85 -1.5 - -2.3 -1.25 -0.22 - - - -4.45 - -1.92 -1.1 - - -1.26 - -2.29 -5.27 -0.73 -1.16 1.48
- - -4.37 1.58 0.56 - - - - - -0.4 -0.23 - 0.19 -2.4 2.67 -1.75 - -7.14 -5.75 2.18 - - -3.97 1.04 - -3.52 0.17 - 3.31 2.07 - -0.75 -7.03 - -1.83 -
- -1.09 -0.35 - -0.07 - - -3.49 - -4.05 -2.45 -4.03 -1.01 - -1.2 1.52 -1.46 -1.41 -0.9 - -0.91 -1.38 1.39 -0.51 -3.71 - -1.13 1.13 - 3.77 2.5 - 0.3 -1.58 -0.41 -0.49 -4.67
Zm00001d015830 (GRMZM2G701784)
- - 3.14 - -0.17 - 1.31 - - - - -0.78 - - - 2.52 - - - -1.25 - - 1.73 - -0.07 - 2.76 0.52 - - - 0.08 0.53 -4.42 - 1.61 -
- - -0.26 -0.54 0.53 1.28 1.29 - -3.38 - 0.74 1.22 - 2.17 -2.1 2.26 -0.51 - -0.51 -1.6 2.7 -1.25 - - -3.24 -0.77 0.54 -2.23 - - - - -0.34 - -1.89 0.09 1.27
- - 0.55 1.23 1.53 - -0.01 1.07 - - 0.9 -0.37 - 2.08 -1.46 3.28 -3.42 - 0.98 -2.99 -5.25 - - - -2.92 - 0.61 -1.84 - - -1.72 - -1.31 - -1.25 -1.46 2.2
- - - - - - - - - - - - - - - 3.87 - - - - - - - - - - - - - - - - - - 4.49 - -
- - 0.14 - 1.1 -4.03 1.38 - - - 2.27 -0.5 - 0.52 -1.41 2.48 - -2.04 -0.5 -0.28 - - - - -0.77 0.85 -1.59 0.2 - - - - -3.45 - - 0.24 3.49
- - 1.67 - 0.05 - - 2.49 - - 1.54 -1.49 - -1.39 - 2.86 - - 0.25 -4.56 -0.58 - - - -0.3 - 1.91 3.05 - - - - 0.0 - - -4.73 -1.11
- - - - -1.76 - - - - - - 0.72 - - - 2.7 - - - - - - - - - - - 4.84 - - - - - - - - -
- - - 5.12 - - - - - - - -0.65 - - - 0.27 - - - - - - - - - - - -2.86 - - - - - - - -1.58 -
- - - - -2.78 -1.66 -2.35 - - - 0.91 -1.16 - - 0.32 2.96 2.5 -4.82 3.52 -2.12 -2.8 - - -3.04 - - - -3.35 - -0.86 -1.7 - -6.19 - 2.5 -2.69 -0.82
- - - - 2.61 2.97 - - - - - 2.11 - 3.01 - 3.42 - - - - - - - - - - - - - - - - - - - - -
Zm00001d025301 (GRMZM2G579854)
- - - - 0.61 - 3.33 - - - 2.34 0.93 - - -1.53 2.12 - - 1.71 - - - - - 2.05 - - -0.84 - - - - 2.32 - -0.8 -1.87 -
Zm00001d025358 (GRMZM2G164645)
- - - - -1.0 -0.15 0.42 - - - - -0.06 - - 1.13 1.45 0.23 - 3.63 - - 0.29 - - -1.37 2.88 - -2.53 - 1.4 - - - - -0.39 0.4 -0.05
Zm00001d025532 (GRMZM2G300238)
- - - - -1.21 - - - - - - -2.85 - - - 4.0 - - 0.49 -0.11 - - - - - - - 4.08 - - - - - - - 0.32 -
- - -3.78 3.82 1.36 -2.37 -1.83 - - - 1.22 1.13 - -1.18 -2.36 0.99 - - -6.1 -5.63 -2.62 - - - 1.36 - - -2.2 - - -3.39 - 2.56 - -2.83 0.35 1.17
Zm00001d027578 (GRMZM2G018417)
-4.82 -1.69 -3.31 1.43 1.76 -0.37 -5.67 -6.44 -3.85 -3.68 -0.4 -0.39 - -5.18 -2.36 1.63 1.03 -3.58 0.43 -1.89 0.5 0.32 - -7.68 -0.46 -0.38 0.14 -0.27 - 1.51 -1.39 - -1.64 -3.01 3.2 -0.95 0.52
- -7.85 -5.38 2.06 0.58 -0.6 -2.45 - - -8.04 -0.87 0.21 - 3.39 -1.69 1.4 1.41 - 0.49 -3.27 1.28 - - -9.72 -0.03 2.03 - 0.34 - -5.03 -2.51 - -0.28 -2.95 -0.55 -1.14 -3.01
Zm00001d028077 (GRMZM2G411216)
-6.19 -4.24 -3.59 0.05 0.01 1.23 -2.41 -2.46 -4.7 -4.42 -0.1 -2.64 -3.55 2.17 -2.38 1.59 1.07 -0.84 1.74 -0.69 -1.82 0.35 -3.76 -2.37 -4.37 -1.54 - 1.47 - 2.72 0.58 - -2.33 -2.73 -0.62 -1.96 1.14
- - -7.09 0.12 -0.47 0.54 - - - - -0.69 -2.99 - 2.63 -2.39 1.6 -0.52 - 0.74 - -0.68 -1.51 -0.15 - -5.53 -4.59 - 1.34 - 3.49 1.34 - -4.86 -5.44 -2.88 -3.21 1.42
Zm00001d029588 (GRMZM2G053757)
- - 0.98 - 0.61 - 1.72 - - - 2.48 0.59 - - - 3.12 0.4 - 3.49 - - - - 0.35 - - - - - - - - - -0.69 - - -
- - 0.75 - 1.31 -1.5 -3.61 - -1.81 - 0.76 -0.92 - 3.19 -3.36 2.98 -2.96 - 0.93 -0.19 -4.31 0.4 - 0.1 -4.49 - 0.13 -0.15 - - - - -0.29 - 1.7 -1.45 -0.12
Zm00001d035465 (GRMZM2G076768)
-5.98 - -1.65 - 0.83 -1.89 -0.68 1.23 - -5.05 2.24 -1.34 - 0.15 -3.91 2.51 -2.71 1.15 1.43 0.6 1.03 0.0 - -3.94 -1.71 0.36 -1.72 -0.46 - 1.02 -2.82 - 0.33 -3.24 -6.23 -1.82 1.8
Zm00001d035539 (GRMZM2G122628)
- - - - -0.49 - - 4.05 - - 2.82 -1.66 - - - 3.01 -0.4 -1.17 -2.86 - - - - - - - - -0.3 - - -1.56 - -0.13 -2.98 -4.33 -1.24 -1.88
- - -0.37 0.49 -0.2 -0.93 - -2.36 - - -1.84 -1.46 - 1.51 -2.31 2.09 2.54 -3.16 1.21 -2.72 1.99 1.76 -1.16 0.63 -0.65 0.55 -0.4 0.5 - - -6.48 - -2.31 -3.92 1.03 -0.88 -1.32
Zm00001d040489 (GRMZM2G310465)
- -7.65 - - -1.97 1.33 -8.24 -6.81 - -5.22 -2.15 -1.92 -5.48 - -8.65 -0.05 2.37 -5.85 0.28 -8.86 1.03 - 3.2 -7.09 -5.01 1.82 -5.05 -2.27 - 2.9 1.14 - -2.79 -6.96 -2.06 0.23 -5.51
Zm00001d040773 (GRMZM2G017809)
-7.1 -5.14 -5.5 - -4.33 -4.29 -4.52 -4.18 - - 1.93 -5.2 - -3.38 0.22 3.29 -1.26 -2.66 1.1 -5.32 3.85 0.37 - -4.88 -1.63 -2.54 -4.71 -3.79 -0.55 -3.07 -2.09 0.29 -6.69 -4.35 -2.66 -4.81 -1.7
Zm00001d040827 (GRMZM2G017853)
-1.37 -0.46 -0.03 -1.29 -0.25 -0.0 0.02 0.39 0.79 0.84 0.46 0.57 -0.67 0.37 0.22 0.71 0.16 -0.11 0.38 -1.9 -0.19 -0.24 0.09 0.45 -0.16 -0.68 -0.39 -0.06 0.02 0.02 -0.26 -1.59 -1.05 -0.73 0.59 0.6 -0.16
- - - - 0.27 - - - - - - -2.71 - - - 1.85 - - 0.2 -0.5 -1.86 - - - - - - - - 4.59 0.67 - -3.26 - -1.94 - 1.95
- - - - 2.7 - - - - - - 2.94 - - - 4.51 - - - - - - - - - - - - - - - - - - - - -
Zm00001d045881 (GRMZM2G054133)
- - - - -2.35 - 2.46 - - - - -0.78 - - - 2.34 - - -1.47 2.71 - - - - - - - -0.51 - 3.65 - - - - 2.34 -1.16 -
Zm00001d046515 (GRMZM5G862017)
-7.46 -6.13 - - -6.59 -6.59 1.88 - - - 1.61 -2.83 - 4.28 - 0.78 -4.05 0.99 0.25 2.14 -1.4 - - -8.0 -4.09 - - -7.65 -0.69 -3.22 -5.35 - - - -3.88 -7.39 -
-8.87 -6.69 -1.03 0.97 1.01 -0.1 -3.35 1.98 - -7.73 1.91 -0.01 -5.7 1.75 -1.35 2.84 -2.66 -5.6 0.01 -2.48 -0.12 0.22 -6.43 -8.89 -4.55 0.37 -0.33 1.62 - -1.69 -3.07 - -0.07 -7.61 0.04 -2.65 -0.77
Zm00001d048244 (GRMZM2G028794)
- -7.12 -3.65 -2.87 -1.93 -1.63 - -2.26 -4.84 - - -2.14 - 1.66 -1.18 1.48 -4.38 -2.28 1.21 -1.92 -3.11 4.48 - -3.78 -0.38 - - -1.57 - -0.47 -4.39 - -1.88 -1.95 -6.69 -9.39 0.63
Zm00001d048614 (GRMZM2G008369)
-1.19 0.42 -0.35 -2.01 0.32 0.43 -2.29 -0.4 -1.95 -1.53 0.85 -0.38 -0.62 0.62 -0.35 1.6 0.73 0.04 0.23 -5.5 -1.06 0.1 0.08 1.03 -1.06 -2.55 -0.21 0.05 -0.64 0.76 0.59 -0.2 0.13 0.53 0.51 -0.58 0.07
- - - -0.77 0.1 -0.16 - - - - 2.05 -1.48 - - -1.52 2.87 - - 1.39 -1.51 - -2.19 - - -5.38 - -2.84 1.97 - - - 3.24 0.93 0.83 - 0.88 -4.48
- - -4.01 2.63 0.13 -1.58 1.81 0.47 - - 0.9 -1.09 - -3.67 -3.27 1.4 1.16 -4.0 1.2 -4.1 -7.91 0.36 1.58 -7.33 -0.41 -1.59 - 2.39 - -0.13 - - 0.18 -4.87 -7.8 -1.45 0.63
- - - - 1.34 - - - - - - 1.26 - - - 3.27 - - - 0.7 - - - - 2.32 - - 3.03 - - - - - - - - 2.93
- - -4.86 2.14 0.5 0.62 0.57 -0.9 - - -0.49 -0.38 - 2.28 -1.41 0.66 1.27 - 1.2 -4.49 -2.39 0.28 1.17 -6.32 -0.4 0.66 -2.23 1.02 - 1.85 -3.61 - 0.15 -7.29 -9.97 -0.45 -0.42
- - 1.42 1.5 -0.78 2.69 -1.36 - - - -0.04 -1.32 - 1.85 - 1.02 1.81 - 0.59 -1.24 -0.5 - - - 1.1 - 0.37 -3.49 - - - - -1.92 - -4.72 2.28 1.16
Zm00001d051455 (GRMZM2G030106)
- - -4.59 - -0.39 0.37 -3.81 -0.11 - - 2.22 -1.29 - - -3.02 1.1 1.35 -2.41 1.19 -3.04 0.78 - - -4.39 -2.55 1.5 - 1.27 1.55 2.29 0.01 - 1.13 -5.6 -0.02 -0.03 0.3
-5.99 - -5.39 - 1.01 - - -5.36 - - -0.19 -2.18 - -0.61 -5.57 2.22 - - -0.43 -5.83 2.76 - -2.18 -6.75 -4.57 -0.14 - -5.31 - 3.79 0.19 - -0.48 -3.58 -5.66 0.19 1.49
Zm00001d053435 (GRMZM2G319056)
- - - - 3.3 - - - - - - - - - - 0.69 - - - 3.03 - - - - 4.12 - - - - - - - - - - - -
- -2.13 - 1.14 2.52 1.2 -1.13 - - - -0.69 0.11 - - - 2.92 1.17 - 1.0 - -2.68 -0.34 - -1.16 -2.65 - - 2.46 - - - - -2.21 - 1.46 -0.41 0.87

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.