Heatmap: Cluster_26 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Root (elongation zone)
Root (meristematic zone)
Root (stele)
Root (tip)
Root
Leaf (3rd leaf of seedling)
Leaf (3rd leaf)
Leaf (apex)
Leaf (bundle sheath)
Leaf (mesophyll)
Leaf (Seedling)
Leaf
Internode
Stalks
Shoot
Shoot (apex)
Tassels (primordia)
Tassels
Anther
Pollen
Ear (immature)
Ear (inflorescence)
Ear (leaf)
Ear (primordia)
Ear
Silks
Kernels (germinating)
Kernels
Maternal transfer zone
Nucellus
Embryo
Endosperm (transfer layer)
Endosperm
Seeds
Coleoptyle (5 day)
Seedling
Whole Plant
- - - - - - - - - - - -0.84 - - - -1.71 - - - 2.1 1.44 - - - - 4.75 - - - - - - 1.21 - - - -
Zm00001d001804 (GRMZM2G051974)
0.52 -0.09 -3.98 -1.15 -1.04 -2.68 -3.92 -0.51 -0.44 -0.72 -3.15 -2.18 -2.02 -0.81 -0.34 -1.33 0.27 0.87 0.95 -0.68 -0.55 -0.77 -4.31 -0.03 -0.87 3.18 -0.62 -0.45 -3.02 1.95 -1.25 - -3.78 -1.09 1.82 -0.14 -0.35
- - - - -3.03 - - - - - - -2.48 - - - -1.63 - - -1.2 1.79 - - - - - 5.02 - - - - - - - - - - -
Zm00001d002812 (GRMZM2G009208)
-0.17 0.51 0.72 0.04 0.42 -1.2 -1.91 -1.02 -1.66 -1.93 -1.05 -0.63 -0.88 -0.11 -0.68 0.05 0.2 1.56 0.33 -1.2 -0.41 -0.59 -1.01 0.19 -0.05 2.16 0.74 -0.12 0.52 0.69 -0.71 -0.87 -0.81 -0.72 0.51 -0.7 -1.58
Zm00001d003996 (GRMZM2G073931)
1.21 0.93 -2.63 0.18 -1.6 -6.66 -6.88 -0.89 -4.81 -7.19 -4.48 -4.45 0.17 1.78 -2.55 0.42 -0.23 -0.49 -0.21 -7.95 0.4 0.92 -3.34 0.87 0.44 3.39 -1.37 -1.29 - -0.73 -1.63 - -5.88 -1.78 0.92 -1.87 -0.29
Zm00001d004787 (GRMZM2G164647)
- - - - -0.47 -2.06 - - - - - -8.43 - - - -0.05 - - -1.18 - - 1.46 - - - 4.98 - - - - - - -2.73 - -2.66 - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Zm00001d006454 (GRMZM2G457003)
-1.84 -4.63 -2.61 0.37 -0.89 -1.22 -2.3 -0.1 -1.23 -0.82 -2.98 -1.22 -1.22 -0.53 -0.6 -1.29 0.47 -0.44 -0.03 -6.97 0.2 -0.33 -0.8 0.13 -0.48 3.96 -1.55 0.3 -2.02 -0.77 -0.66 -3.18 -0.43 -0.66 -0.47 -0.6 -1.19
- - - - 1.0 - - - - - 0.64 0.57 - 3.1 - 2.0 - - 0.41 - 3.25 - - - -0.73 - - 0.17 - - - - 1.04 - - -2.63 2.2
- - - - - - - - - - - -1.16 - - - - - - - 1.14 - - - - - 5.1 - - - - - - - - - - -
Zm00001d007224 (GRMZM2G453845)
- - - - -1.6 - - - - - - - - - - - - - - - - - - - - 5.05 - - - - - - - - - - 1.82
Zm00001d007428 (GRMZM2G358633)
- - - - -0.33 - 1.16 - - - - 1.68 - - - -2.28 3.05 - - - - - - - - 4.48 - - - - - - - - - - -
- - - - - - - - - - - 0.87 - - - -3.02 - - - - - - - - - 5.13 - - - - - - - - - - -
Zm00001d007818 (GRMZM2G380341)
- -4.35 -4.06 0.21 0.25 -1.7 -4.94 - -4.06 - 1.66 -0.1 - 0.55 -5.01 1.43 - - -0.34 -5.99 0.46 -0.91 0.22 -5.05 -1.32 3.75 -1.88 -2.15 - - - - -0.53 -6.88 -1.7 -0.69 2.58
- - - - - - - - - - - -2.89 - - - -3.37 1.59 - - - - - - - 1.35 4.94 - -0.75 - - - - - - - - -
Zm00001d007904 (GRMZM5G864266)
-1.18 -0.07 -0.23 0.28 -0.66 -0.96 -1.3 -0.72 -1.6 -1.06 -0.7 -1.33 -1.41 -0.63 -1.46 -0.17 0.76 0.15 0.62 -2.67 -0.74 -0.08 -0.13 0.4 -0.8 3.26 -0.42 0.56 -3.11 0.89 -0.15 -2.59 -0.23 0.08 -0.87 -0.34 -1.43
Zm00001d009371 (GRMZM2G317878)
- - - - - - - - - - - 1.42 - - - - - - - - - - - - - 4.87 - 2.34 - - - - - - - - -
- - - - - - - - - - - 1.12 - - - 0.61 - - - - - - - - - 5.06 - - - - - - - - - - -
Zm00001d010658 (GRMZM2G080731)
- - - - -9.16 - -11.01 - - -10.37 - -8.52 -2.97 -5.16 -6.67 -6.16 - -2.99 -6.24 -5.29 -3.54 -4.39 - - 0.6 4.89 -7.31 0.58 - 1.71 -3.36 - -5.95 -0.99 -6.47 -5.12 -7.36
Zm00001d011323 (GRMZM2G375707)
- - - - -4.19 - - - - - - -3.81 - - -1.89 -3.71 - - 0.23 -0.15 - - - -0.77 -0.96 4.37 - 2.36 - - - - 2.05 1.44 -4.61 -1.31 -2.56
- - - - - - - - - - - - - - - - - - - - - - - - - 5.21 - - - - - - - - - - -
Zm00001d011955 (GRMZM2G054341)
-2.53 -2.08 0.45 0.31 0.11 -3.35 -3.61 -2.29 -1.99 -3.78 -4.16 -2.53 -1.01 0.93 -0.51 0.27 -2.59 -2.11 -7.67 -7.03 -1.28 -4.28 -0.67 -1.94 -0.27 4.15 -2.5 -3.69 0.39 -1.51 -1.6 1.5 -5.12 -2.81 0.54 -1.4 -1.71
Zm00001d012023 (GRMZM2G180330)
- - -2.79 2.39 0.09 - - - - - - -5.13 - - - -0.63 - -3.95 -3.55 -5.95 - - - - - 4.72 -3.52 -4.11 - - 0.6 - -4.44 - -1.95 -2.23 0.28
- - - - - - - - - - - - - - - -3.81 - - - - - - - - 1.89 5.01 - - - - - - - - - -0.09 -
1.5 -3.02 - 1.03 -0.49 -6.34 - -8.0 - - - -3.1 -2.35 - 0.56 -5.7 - -0.45 -1.38 -3.86 -4.29 - - - -0.59 4.3 -2.75 -1.19 - -4.7 - - -4.95 -1.99 2.49 0.06 -1.86
Zm00001d015949 (GRMZM2G028060)
- - - - - - - - - - - -1.53 - - - -3.98 - - - - - - - 1.38 - 5.09 - - - - - - - - - - -
- - - - - - - - - - - -0.38 - - - -0.76 - - - - - - - - - 5.16 - - - - - - - - - - -
- - - - -10.67 -0.92 - - - - -3.76 -11.58 - - - -3.35 -5.41 -3.6 -1.65 -4.73 - - -1.33 -3.27 -8.28 5.09 - -5.75 -0.13 -3.76 - - -8.99 -7.27 -10.05 -2.82 -
Zm00001d016252 (GRMZM2G079954)
- - -2.76 1.19 0.19 -1.85 -2.29 - - - -1.02 -1.35 - - -2.88 1.17 2.4 - 0.62 - - 1.58 - - -1.54 3.58 -2.9 0.38 - 0.71 0.51 - -0.89 - -1.56 -1.41 0.83
- - - - - - - - - - - 0.87 - - - -3.02 - - - - - - - - - 4.96 - - - - - - 1.95 - - - -
Zm00001d017490 (GRMZM2G158039)
- 3.72 - - 0.54 - - - - - - - - - -1.08 0.19 - - - 3.48 - - - - - - - - - - - - - - 3.26 - -
Zm00001d017500 (GRMZM2G306566)
- - - - -6.12 - - - - -5.52 -6.2 -3.99 - - -7.03 -5.19 -6.68 -4.87 -6.02 -5.79 -6.56 - - - -2.31 5.16 -4.23 -5.05 - -1.29 -6.3 - -10.01 -3.5 -5.16 -3.33 -4.74
- - -5.53 3.76 0.18 - - - - - - 0.13 - 2.3 - 0.29 - - 0.59 -3.92 -6.47 - - -5.06 0.97 3.32 - -6.13 - - -5.52 - -1.63 -5.43 - 0.2 -
Zm00001d019901 (GRMZM2G016212)
- - - - 1.32 - - - - - - 0.43 - - -0.52 0.49 -3.95 - 0.36 -2.64 - - - - 2.23 4.16 - 2.1 - - - - -0.24 - -7.03 0.9 -
- - - - - - - - - - - -2.12 - - - - 0.54 - - - - - - - - 5.14 - - - - - - - - - - -
1.8 - - - - - - - - - - -1.01 - - - 0.27 2.32 - - - 0.99 - - - 2.21 4.34 - - - - - - - - - - -
- - -1.02 - -0.72 -1.85 -4.47 -5.94 - - -0.34 -0.67 - -2.74 -8.92 0.18 1.86 - 0.59 -6.29 -6.34 -1.05 - - 0.26 4.03 2.89 -4.86 - - -2.48 - -0.8 - -3.7 0.2 -2.18
- - -0.49 - -1.08 -2.08 -3.85 - - - -2.72 -0.54 - - - -0.07 1.74 - 0.3 -6.31 - -0.95 0.2 - 0.58 3.98 3.02 - - - -2.34 - -1.26 - -6.45 0.49 -
- - - - 0.7 - - - - - - -0.58 - - 0.35 -0.26 - - -2.41 -1.36 - - - - 1.73 4.62 - 0.29 - - - - 0.15 - - 0.81 -
- - - - -2.23 1.02 - - - - - -1.16 - - - -0.96 3.43 -2.19 -1.58 -0.88 - - - - - 3.93 - 0.55 - - - -0.63 -0.46 0.27 - 0.1 0.66
Zm00001d022251 (GRMZM2G335738)
0.17 -0.93 0.83 -0.98 -0.65 -2.01 -1.41 -1.07 -1.95 -2.36 -2.97 -1.84 -0.95 -0.97 -1.6 -0.75 -0.35 0.03 0.54 -5.05 -0.79 0.07 -2.38 -1.22 0.7 3.86 -0.68 -1.02 -5.66 0.17 -0.47 -4.17 -1.74 -0.76 0.97 -0.8 -1.44
0.44 0.86 -0.01 -1.25 -1.68 0.12 -0.43 2.25 -4.13 -2.44 - -0.36 -0.36 - -1.2 -1.33 -1.2 -1.3 -0.7 -3.1 - 0.94 - 2.88 1.68 - -0.47 -0.2 - - 1.19 - -2.42 0.19 0.33 -0.37 0.68
- - - - -0.46 - - - - - - 2.05 - - - -1.41 - - - - - - - - - 4.99 - - - - - - - - - - -
- - - - 2.8 - - - - - - - - - - 3.79 - - - - - - - - - - - - - - - - 4.02 - - - -
0.14 - 1.46 1.07 0.25 - - - -4.8 -2.96 - -5.21 - - -2.65 -0.98 - -1.38 -6.55 -8.38 - - - - -3.58 4.55 - -0.61 1.26 - - - -0.05 -1.78 -1.29 -1.26 -5.11
Zm00001d025208 (GRMZM5G830436)
0.6 -0.17 -1.51 -0.03 -1.43 -6.76 -6.86 -1.59 -4.68 -4.93 -8.15 -3.99 0.0 -0.41 -1.74 0.08 -0.42 -0.6 -0.51 -7.18 0.34 0.28 -5.07 0.1 0.22 3.61 -0.88 -1.24 - 1.42 -1.66 -6.72 -4.11 -1.67 2.27 -1.35 -0.54
Zm00001d028042 (GRMZM2G411079)
- - - - -1.96 0.4 - - - - - - - - - -2.04 - 2.19 - - - - - - - 4.9 - - - - - - -0.31 - - - -
Zm00001d028500 (GRMZM2G372509)
- - - - - - - - - - - 0.47 - - - -4.91 - - - - - - - - - 5.15 - - - - - - - - - - -
Zm00001d028906 (GRMZM2G394203)
- - - - -10.21 -2.75 -1.93 -5.67 -6.77 -3.52 -4.9 -3.03 - -3.19 -1.19 -6.27 - -1.67 -6.97 -7.34 - - 0.43 - -4.56 4.66 -2.82 0.91 1.67 - -1.09 0.25 -1.61 -1.48 -2.74 -2.71 -0.06
Zm00001d029682 (GRMZM2G133968)
- - - - -2.41 - - - - - - 1.17 - - - 1.33 3.73 - - - - - - - - - - 3.39 - - - - - - 2.69 0.86 -
Zm00001d030644 (GRMZM2G143046)
- - -6.32 -3.36 -5.09 -3.83 -0.4 -3.09 -4.69 -5.75 -1.08 -1.07 - -3.88 -1.64 -4.65 -3.62 -1.22 -4.14 -5.89 -7.68 -2.59 0.17 -2.48 -2.21 4.89 - -0.3 - - - - -1.32 -0.93 -2.34 -1.41 -2.0
Zm00001d030815 (GRMZM2G333377)
- - - - - - - - - - - -1.26 - - - -0.09 - - - - - - - - 0.23 4.94 - 1.8 - - - - - - - -1.79 -
- - - - 0.2 -1.13 0.09 0.7 - - 0.26 -0.8 - - -1.68 0.98 -1.11 - 1.56 - - - - - -1.05 4.22 - -0.38 - - -2.24 - -2.69 -3.85 1.7 -0.74 0.17
Zm00001d033808 (GRMZM5G825695)
- - - - - - - - - - - - - - - 5.21 - - - - - - - - - - - - - - - - - - - - -
- - 1.25 - - - - - - - - -3.57 - - - -2.36 - - - - - - - - - 5.02 - -0.98 - - - - - - - - 0.47
Zm00001d036965 (GRMZM2G064382)
-3.32 -6.52 -1.16 -0.36 0.28 -0.05 -1.97 -1.22 -3.11 -4.24 -0.41 0.15 -2.77 0.63 -1.29 -0.67 -2.26 1.0 -1.99 2.0 0.68 -0.82 0.63 0.05 0.11 -2.66 2.43 -0.03 1.12 -1.7 1.52 -0.79 0.52 -0.41 -2.59 -0.88 -1.33
Zm00001d038814 (GRMZM2G334658)
- - - - - - - - - - - -1.06 - - - -9.34 -2.77 1.18 -1.52 -1.56 0.86 - - - - - - 4.54 - - -2.16 - 2.79 0.18 - -3.53 -
Zm00001d039469 (GRMZM2G077197)
-3.62 -3.29 -1.77 -0.84 -1.01 -1.2 -1.19 -0.61 -3.66 -3.19 -0.62 -0.81 -3.55 -2.42 -2.13 -1.68 -0.11 -1.91 -2.1 -5.81 -0.7 -1.23 0.41 0.11 -0.99 4.58 -1.89 -1.87 - -1.91 -1.75 -4.57 -4.48 -2.68 -1.05 -1.4 -1.82
- - - - - - - - - - - 1.71 - - - -0.22 - - - - - - - - - 4.22 3.62 - - - - - - 0.95 - - -
- - - - -2.38 - - - - - - 0.96 - - - -3.32 - - - -0.86 - - - - - 5.1 - - - - - - - - - - -
Zm00001d041315 (GRMZM2G363503)
- - -2.72 - 1.05 -0.1 -1.14 -0.15 - - -2.6 -0.78 - -0.43 -4.45 0.25 1.59 - 0.04 - -3.31 -2.22 - - 0.71 3.87 -0.45 1.15 - -0.78 -3.69 - -0.06 -4.39 1.72 -0.28 -1.37
-1.65 0.14 -1.05 2.36 -0.35 -1.03 -1.37 -1.02 - -0.73 0.55 -0.87 1.31 - -1.17 -0.46 1.2 - -1.16 - - - - 0.76 -0.75 3.2 - -2.68 - 2.37 - - -0.83 -2.24 -3.81 -1.15 -0.54
Zm00001d041835 (GRMZM2G032384)
- - - - -2.26 - - -0.09 - - - -1.4 - - - -2.55 - 0.49 - - - 2.19 - - - 4.81 - -1.87 - - - - - - - -3.52 -0.04
Zm00001d042561 (GRMZM2G346342)
- - - - - - - - - - - -2.25 - - - -2.15 0.16 2.79 0.97 -0.27 - - - - - 4.69 - - - - - - - - - - -
Zm00001d042578 (GRMZM2G471142)
-10.92 - -2.66 -1.34 -3.08 - -10.71 -0.41 -6.25 -7.18 - -6.53 -0.57 -0.34 -3.51 0.29 -2.3 -0.69 -2.56 -6.12 -0.79 0.39 - -0.91 0.45 4.63 -3.76 -0.54 -1.98 -0.27 -2.26 -4.12 -3.13 -0.55 -4.23 -3.08 -3.66
Zm00001d042888 (GRMZM2G355342)
- - -5.45 1.11 0.4 -1.76 -0.47 -0.72 - - -0.49 -0.9 - 0.9 -3.34 1.9 2.99 - -0.31 -6.87 0.55 0.47 -2.57 -6.42 -1.2 2.89 -4.91 -0.06 - 0.01 -1.53 - -0.58 -6.65 -0.75 -0.57 0.02
-3.99 -2.1 2.15 -0.83 -0.18 -3.53 -2.2 -2.69 -0.47 -1.15 -3.48 -3.02 -2.78 0.92 -3.05 -0.73 -0.28 0.49 -2.23 -6.58 -2.94 -2.09 -3.16 -1.89 -3.0 4.32 -2.08 -3.0 -2.51 -0.38 -2.28 -3.53 -3.81 -2.14 -4.03 -0.85 -1.4
Zm00001d044107 (GRMZM2G143328)
-6.45 - - -5.2 -5.6 -6.83 -8.0 - -7.11 - -6.45 -6.49 - -5.58 -6.46 -7.76 -9.31 -3.06 -3.31 -3.62 -9.87 -7.65 -7.01 - -0.58 4.89 -7.3 2.05 -2.01 0.45 - -5.22 -7.01 -1.47 -5.27 -7.05 -6.29
Zm00001d044867 (GRMZM2G058549)
- - - - - - - - - - - -1.25 - - - -0.13 - - - - - - - - - 5.01 - - - - - - 1.8 - - - -
Zm00001d044987 (GRMZM2G033805)
-0.32 -0.13 1.16 0.48 -0.18 -1.96 -1.74 -0.79 -1.79 -1.91 -1.66 -1.52 -0.06 1.22 -0.83 0.51 -0.17 0.82 0.58 0.49 -0.94 -0.72 -1.67 0.06 -0.36 2.35 0.17 -0.46 0.04 0.1 -0.1 -1.92 -2.39 -0.29 0.99 -0.89 -0.93
Zm00001d045079 (GRMZM2G151887)
-3.21 -0.31 -0.32 -0.91 -1.15 -6.67 -3.72 -1.71 -0.26 -1.03 -3.62 -2.12 -3.0 1.05 0.13 0.35 0.67 0.32 0.7 -0.41 1.01 -0.1 - -0.29 -0.42 3.09 0.04 -0.08 - 0.72 -1.13 0.53 -0.57 -0.52 0.55 -0.17 -2.32
Zm00001d045136 (GRMZM2G128515)
1.4 1.15 1.06 0.46 0.19 -0.9 -0.72 -1.28 -1.35 -1.43 -1.02 -0.45 -0.41 -0.44 -1.22 0.2 -0.52 1.01 1.0 -8.52 -0.73 0.34 0.03 0.12 0.93 1.73 -0.48 -0.48 -0.91 0.84 -1.16 -2.53 -2.16 -1.22 -0.78 -0.39 -0.68
Zm00001d045206 (GRMZM2G099363)
1.44 -2.67 2.06 1.15 0.78 -6.63 -3.15 - 0.06 -1.53 - -0.92 0.75 0.07 -2.16 0.26 -5.94 1.88 -0.17 -4.23 -3.24 -2.56 -0.82 -5.74 0.93 2.69 0.73 -0.99 0.43 -3.23 -3.12 -2.55 -1.01 -1.02 -1.22 -0.75 -4.52
- - - - - - - - - - - -2.92 - - - -0.09 - - - - - - - - - 4.72 - - - - 2.62 - 0.51 - 0.94 - -
Zm00001d045468 (GRMZM2G121333)
- - -2.71 1.07 -0.42 -7.64 - -7.45 -1.27 -1.46 - -1.73 -3.97 -0.02 0.85 -1.36 -8.42 1.39 0.71 -6.5 -7.15 - - -8.47 -2.81 4.09 -1.52 -0.17 - -0.7 -1.93 -1.58 -0.52 -1.56 0.8 1.12 -0.36
-0.53 -0.2 -1.03 - -0.8 -3.5 - -2.64 - -2.2 - -0.75 - - -3.73 -0.36 -0.26 -2.11 0.79 -2.52 -3.97 - - 1.0 1.18 4.29 - -2.51 - 1.86 -1.14 - -2.05 - -0.86 -0.95 -
Zm00001d045875 (GRMZM2G146308)
- - -10.77 - -11.82 - -11.21 - -9.77 - - -9.88 -5.89 - -9.29 -4.85 -7.89 -5.69 -9.99 -5.04 -0.37 -2.24 - -8.57 0.11 5.12 -7.91 -8.24 - -9.41 -7.91 - -8.14 -8.82 -4.92 -8.83 -8.47
- - - - -0.72 - 0.53 - - - - -1.96 - - 0.61 -2.83 - - - - - - - - - 4.99 - - - - - - - - -0.45 -1.13 -
- - -1.24 - 0.84 - - - - - - 0.15 - - -0.75 -0.0 -2.91 - -1.42 -4.85 - -0.51 - - 1.38 4.69 - -2.44 - - - - -1.03 - -1.65 0.5 -
0.38 - - - -0.08 - 0.11 - - - 1.1 0.08 - - -1.03 0.59 - 0.76 1.39 3.23 -1.95 - - - - - 0.8 1.4 - - - - 0.32 -1.86 2.6 -4.33 1.35
- 3.09 - - 0.28 - - - - - - 1.09 - - - 1.22 2.81 - 3.49 - - - - - - - - 1.87 - - - - - - -0.07 - -
- - - - - - - - - - - 2.08 - - - - - - - - - - - - 2.5 4.76 - - - - - - - - - - -
Zm00001d049897 (GRMZM2G012898)
- - - - - - - - - - - - - - - - - - - - 0.57 - - - -0.28 4.85 - 2.16 - - - - 0.5 - - - -
Zm00001d050876 (GRMZM2G157016)
- - - - - - - - - - - - - - - -3.28 3.54 -0.09 - - - - - - - 4.61 - - - - - - - - - - -
Zm00001d051211 (GRMZM5G850355)
-1.01 -0.3 -0.41 0.2 -0.6 -1.32 -1.54 -0.19 -1.09 -0.93 -1.69 -1.06 -4.69 0.39 0.21 -0.33 0.11 -0.32 -0.52 -3.32 -0.87 -0.71 -0.03 0.85 -1.31 2.56 -2.54 -1.04 1.52 0.12 -0.09 1.52 -0.41 -0.04 1.2 -0.3 -2.15
Zm00001d051710 (GRMZM2G112988)
- - - - - - - - - - - 1.22 - - - -1.06 - - - - 1.93 - - - - 4.29 - -0.27 - - - - - - - 0.7 3.06

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.