- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone | Immature male cones | Cambium and expanding xylem | Cambium | Expanding xylem | Expanding and mature xylem | Maturing xylem | Wood | Bark | Bark, healthy | S1 xylem tracheids | S1 whole sections | S2 ray cells | S2 xylem tracheids | S2 whole sections | Dead late wood | Phloem and cambium | Dear early and late wood | Bark, root and butt rot | Vegetative shoots - needles | Vegetative shoots - stem | Vegetative shoots | Girdled twig - stem | Dried twig - needles | Girdled twig - needles | Needles | Needles - dawn | Needles - later afternoon | Needles - midday | Needles - night | Light, 1 hour | Light, 3 hours | Light, 5 hours | Light, 7 hours | Light, 9 hours | Light, 13 hours | Light, 15 hours | Darkness, 1 hour | Darkness, 3 hours | Darkness, 5 hours | Darkness, 7 hours | Darkness, 11 hours | Vegetative buds | Female buds | Male buds | Buds | Pineapple galls | Somatic germinants - abnormal type | Somatic germinants - normal type | Cell culture - H20 - 5 days | Cell culture - KI added - 5 days | Cell culture - KI added - 20 days | Cell culture - KI removed - 4 days | Cell culture - KI removed - 12 days | Cell culture - solid medium | Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| -3.4 | -0.14 | -2.87 | -3.03 | -1.92 | -4.36 | -2.58 | 0.94 | -1.32 | -0.61 | - | - | -5.67 | - | - | -1.88 | - | -1.89 | -0.92 | 0.19 | -0.13 | - | 0.99 | 0.85 | 1.46 | -2.11 | 1.91 | 1.34 | 2.37 | 2.58 | -0.17 | -0.43 | -0.7 | -0.38 | -0.38 | -0.61 | -0.36 | 0.33 | 0.32 | 0.33 | 0.07 | -0.88 | -3.47 | -3.5 | -1.6 | 0.21 | -3.22 | -0.53 | -0.85 | 1.22 | 0.69 | 0.43 | 1.02 | 0.75 | 0.22 | -2.7 | |
| -0.07 | 0.78 | -2.05 | -1.29 | -2.53 | -4.97 | - | 0.23 | -0.85 | -0.13 | -1.39 | -1.71 | 0.17 | -1.63 | -1.12 | - | - | -2.65 | -1.94 | 0.78 | 0.75 | 0.1 | -0.89 | 1.41 | 1.52 | -0.83 | 1.42 | 1.91 | 2.01 | 1.24 | -1.01 | -0.55 | -0.71 | -0.67 | -0.98 | -1.24 | -0.29 | -1.14 | -0.92 | -0.93 | -1.01 | -1.78 | -2.97 | -3.09 | -0.71 | 0.25 | 0.03 | -0.33 | -0.57 | 0.78 | 1.0 | 1.15 | 0.98 | 0.21 | 1.2 | -0.94 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.