Heatmap: Cluster_198 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Root (elongation zone)
Root (meristematic zone)
Root (stele)
Root (tip)
Root
Leaf (3rd leaf of seedling)
Leaf (3rd leaf)
Leaf (apex)
Leaf (bundle sheath)
Leaf (mesophyll)
Leaf (Seedling)
Leaf
Internode
Stalks
Shoot
Shoot (apex)
Tassels (primordia)
Tassels
Anther
Pollen
Ear (immature)
Ear (inflorescence)
Ear (leaf)
Ear (primordia)
Ear
Silks
Kernels (germinating)
Kernels
Maternal transfer zone
Nucellus
Embryo
Endosperm (transfer layer)
Endosperm
Seeds
Coleoptyle (5 day)
Seedling
Whole Plant
- - - - -4.96 - -4.03 - - - - -6.32 - - -6.17 -3.57 -3.12 - -5.68 -7.7 -2.83 5.18 - - -5.17 - - -9.3 - - - - -4.19 -8.31 -6.99 -6.39 -4.57
- - 0.13 - 0.56 -0.04 1.63 2.43 - - 1.21 -0.78 - - - 1.51 -1.89 - 2.64 -2.5 -1.25 - - -0.62 0.88 2.18 0.54 -1.31 - - - - -0.18 - -3.35 -1.53 0.93
- - - - 2.38 - - - - - - - - - - 2.83 - - - -2.61 - - - - - - - - - - - - -2.73 - - - 4.61
0.92 - - 2.42 -1.88 1.86 - - - - - -0.47 - 2.51 -3.8 1.98 -0.6 - 0.5 -1.44 -2.41 2.99 - - - - - -1.14 - - - - -3.28 0.41 0.22 -0.82 0.29
Zm00001d005839 (GRMZM2G114332)
- -2.33 - - 1.96 0.22 - - - - 1.28 -1.87 - - - 2.78 -1.81 - 2.5 - 1.52 - - - - - -1.19 -1.02 - - - 0.9 -0.68 -3.7 -1.84 -0.09 3.11
Zm00001d007971 (GRMZM2G402239)
2.58 - - 1.67 1.95 -3.33 -3.66 -2.5 - - - -4.83 - - - 1.26 - - -3.85 3.95 -1.81 1.07 - - -3.7 - - -2.57 - - -3.55 0.04 -2.38 -2.12 -2.36 -2.26 0.17
Zm00001d008332 (GRMZM2G017285)
- - -0.63 - 3.99 -1.44 3.22 - - - 1.62 -2.61 -1.2 - - -0.28 -1.84 0.13 -2.74 -2.19 - - - -4.39 -1.07 - 0.58 - - - -2.73 - - - 0.08 0.05 -1.66
- - - - -0.4 -0.38 -2.69 - - - 0.45 -1.63 - - -3.52 1.54 0.75 -1.13 -2.0 -3.08 1.13 - - -3.64 -0.3 - - 2.39 - 1.15 -0.14 1.83 1.54 -1.28 2.04 -2.28 2.46
-1.53 0.26 -0.07 - -0.4 -3.55 -1.14 1.03 -0.93 -0.2 -1.56 -0.36 -0.34 -6.49 -0.07 0.5 -0.13 0.58 -0.87 -1.69 1.21 0.46 -0.07 1.45 -0.64 -1.2 0.45 0.27 1.31 - 0.55 1.81 -0.08 0.43 -1.63 -0.2 -2.16
0.54 -0.84 - 1.06 1.1 -2.33 - - - - -0.72 1.99 - 1.89 -2.37 2.54 -0.99 -0.85 3.16 - 1.53 - - 0.15 - - - 0.02 - - -2.53 - -2.01 - -2.45 -2.49 -1.04
- - - - -2.14 - - - - - - -6.12 - - - -3.04 - - - - - 5.2 - - - - - - - - - - - - - - -
Zm00001d013533 (GRMZM2G170362)
- - - - 0.22 -2.04 2.49 - - - 1.76 0.11 - 0.05 - 2.32 -0.67 - 0.93 - - - - - 0.98 - - - - 3.31 1.54 - -0.43 - -0.75 -1.82 -0.98
Zm00001d015989 (GRMZM5G883138)
- - - 1.83 1.09 - - - - - - -3.14 - 1.99 -4.29 1.6 - - 2.52 - -1.46 - - - - - - -2.12 - - - - - - -3.34 - 4.15
Zm00001d016056 (GRMZM2G069332)
- - - - 3.31 - - - - - - -2.24 - - - -1.56 - - - -0.93 - - - - - - - - - - - - - - -1.66 2.08 4.42
Zm00001d016975 (GRMZM2G086246)
- - - - 1.5 - - - - - - -0.61 - 1.97 - 2.53 - - 4.47 - - - - - - - - -1.76 - - - - -1.04 - - -0.26 -
Zm00001d017222 (GRMZM2G043461)
- -0.09 -2.38 - -3.21 - - - -1.39 - - -4.32 - - -3.06 -2.72 - - -2.78 - -1.42 4.94 - -2.37 - - - -2.23 - - - 1.24 -0.56 -4.88 -3.05 -2.97 -3.17
- - - - - - - - - - - -8.71 - - - -1.09 -0.67 - - - 0.16 4.83 - - 1.93 - - - - - - - - - - -0.2 0.77
Zm00001d018307 (GRMZM2G110324)
- -3.37 -3.08 - -0.34 -3.87 -2.84 - - -1.27 -1.82 -2.53 - -1.46 - 1.04 - -2.95 1.85 -1.29 0.35 3.51 - - -0.79 - - 3.2 - - -2.05 1.54 -0.55 -4.75 -0.13 -0.93 -0.8
- - - - - 2.36 - - - - - - - - - -2.7 - - - - - 4.99 - - - - - - - - - - - - - - -
- - - - -0.14 - - - - - - -5.52 - - - 0.98 - - - 2.52 1.68 - - - - 4.06 - -0.3 - - - - - - 2.94 - -
- - - - -5.72 - - - 2.52 - - -5.82 - - 2.32 1.16 - 1.66 4.28 - - - - - - - - - - - - - - -0.61 -3.51 -0.63 -
- - - - 0.81 3.04 1.06 - - - - 0.92 - - - 0.98 2.11 - - -1.56 - - - - - - - -2.16 - 3.79 - - 0.74 - - -0.6 -
- - - - -3.8 -2.59 -3.1 - - - - -0.0 - - -1.8 0.8 -3.0 -2.3 -0.54 -6.39 - 2.58 - -5.72 -4.06 -1.43 - -6.61 - 4.63 -3.53 - - - -2.54 -0.11 -1.94
Zm00001d025006 (GRMZM2G466897)
- - - - -0.59 - - - - - - - - - - -1.29 - - -1.0 - -0.73 4.77 - - -0.03 - - - - - - - - - 2.71 - -
- - - - 2.85 - - - - - - - - - - 4.9 - - - - - - - - - - - - - - - - - - - - -
Zm00001d026488 (GRMZM2G308365)
-2.72 -5.45 -5.92 -1.3 1.07 -2.9 -6.9 - - - 1.17 -0.13 - - -4.25 1.25 2.69 -6.93 3.49 -6.79 - - -0.56 - -6.42 1.42 -3.04 -7.78 - - - - 1.03 -6.25 -6.64 -0.01 2.12
- - - - -1.19 - - - - - - -2.03 - - - 0.45 - - 4.08 4.05 -1.25 - - -0.25 - - - - - - - - -2.3 - - - -
Zm00001d027606 (GRMZM2G066805)
-0.11 0.86 2.25 - 0.45 - -3.64 -0.15 0.42 0.39 - 0.11 1.0 - 0.49 0.01 -1.15 1.05 0.25 -5.96 - 0.74 -0.15 1.38 -0.29 -3.47 0.84 -2.13 2.14 - -2.29 -0.45 -1.23 -5.77 - 0.01 -1.26
-1.59 - - 3.51 -3.1 -1.07 - - - - - -2.04 - - -1.82 -1.76 2.48 - 0.8 - -1.32 3.68 - -1.05 0.75 - - - - - - - -4.13 - - 0.14 -
Zm00001d029398 (GRMZM2G179789)
- - -1.69 - 0.1 -1.12 - - - - -0.94 -0.97 - 2.52 -2.75 3.1 1.4 - 1.96 -1.46 1.05 2.56 - - -4.08 - - 1.0 - - -3.93 - -0.79 -4.94 -5.13 -1.42 0.73
Zm00001d029458 (GRMZM2G423413)
-1.81 -1.92 - 2.33 -1.62 1.06 -1.43 0.62 - - - 0.23 - - - -0.82 - -0.05 0.38 - -0.4 3.55 - -0.67 -0.66 - - -1.17 - 2.81 - - - - -1.44 0.2 -1.41
0.5 0.26 1.55 - -0.28 -2.08 - -1.07 - - 2.15 -0.73 - - -0.86 1.98 0.74 - -0.15 -2.13 -2.33 - 1.53 -0.35 - 2.22 0.24 0.58 - - -1.08 - -0.87 -0.1 -3.06 -0.51 1.85
- - - - -10.01 -0.48 -3.57 2.04 - - - -2.47 2.01 -0.04 -3.6 2.06 4.15 -0.51 -1.93 - 0.91 -4.51 -0.74 -2.18 -2.71 -1.93 - - - - - - - - -1.91 -1.71 -2.52
Zm00001d030819 (GRMZM2G081151)
- - - - -7.03 - - 1.9 - - - -5.06 1.71 1.0 -3.48 2.6 4.28 -0.65 -4.29 -8.76 -0.0 - - -2.87 -1.35 - -3.81 - - - - - - - -4.07 -4.33 -5.42
- - - - -3.89 -1.85 - - - - -0.64 -1.31 - 2.38 - -1.1 - - - -4.27 - 4.73 - - -2.57 - - - - - - - -2.94 - -3.41 -1.92 1.42
- - - - -1.77 -1.44 - - - - - -3.79 - - - -1.49 - - 0.42 0.02 -1.48 4.83 - - - - - 1.41 - - - - -0.74 - -0.19 -0.68 -
- - - - 0.62 - - - - - - -2.87 - - - 1.31 - -0.04 - - - - - - -0.54 - 4.59 0.71 - - 2.19 - -0.23 - - -4.25 -
- - - 2.01 -1.52 - 0.79 - - - -1.81 -2.17 - 2.45 -3.72 2.1 1.86 -1.22 1.59 -5.81 3.24 - - -2.12 -5.79 -2.66 - - - - -0.85 - -1.08 -0.99 -2.39 -2.63 0.79
Zm00001d035165 (GRMZM2G018262)
- - - - 1.35 - 0.85 3.89 - - - -0.65 - - - 1.96 - - 1.07 - -2.35 - - 0.3 0.88 0.81 - -1.77 - - 0.98 - -0.77 - -4.08 0.75 0.71
-0.28 0.55 -1.38 - 1.4 0.63 -1.33 - - -3.23 1.36 -0.6 - -1.33 -3.51 1.8 -3.15 -1.74 -2.07 -1.87 -2.88 1.44 - -0.33 0.52 - -2.22 -3.48 3.4 - - - -1.34 -2.54 -1.62 -0.84 2.05
Zm00001d036173 (GRMZM2G032537)
- - - - -1.54 -0.06 - - - - - -2.1 - - -3.26 -2.1 0.46 - - 0.84 -1.71 4.85 - - - - - -2.06 - - - - - - -1.76 -3.34 1.06
-7.18 - -0.14 -0.93 1.56 -1.53 -0.96 -2.72 - - -0.89 -1.54 - 0.15 -8.17 0.5 -4.57 -2.96 0.8 -5.86 0.86 1.74 - -3.95 -0.64 1.49 1.1 -0.08 - 2.14 0.97 - -0.19 1.05 1.96 -1.48 -0.12
-4.77 -3.98 -1.75 - 1.26 -0.42 - -4.14 - -3.4 -0.66 -2.67 - -0.76 -3.83 0.99 0.35 - 2.51 -3.67 -2.92 2.9 - - -2.91 0.15 -2.83 1.27 - - - 2.98 0.5 -0.52 -5.41 -1.15 -0.11
- - - - - - - - - - - - - - 0.68 -0.9 - - - -0.1 - 5.08 - - - - - - - - - - - - - - -
- - - - -3.55 - -1.16 - - - - -0.96 - - - 0.06 -0.37 - -1.23 1.79 - 4.68 - - -1.96 - - -3.24 - - - - - - -0.05 -0.5 1.34
- - - - - - - - - - - - - - - -1.99 - - - - - 5.16 - - - - - - - - - - -0.19 - - - -
-3.4 -0.87 -4.53 3.01 -1.53 -1.69 -5.45 -2.07 -5.45 - -3.02 0.03 - - -1.71 0.65 2.21 -2.52 -0.45 -2.23 -2.01 0.97 0.76 -1.78 -0.89 -1.65 -2.42 0.65 - 1.8 -2.22 - -3.37 -4.55 0.79 -1.31 2.52
-2.65 -1.24 -0.39 1.79 0.24 -0.57 -0.23 -1.39 -1.96 -1.87 0.8 -1.14 -2.24 1.2 -1.82 1.24 1.56 -1.75 0.8 -6.0 -0.32 0.03 -2.56 -2.08 -0.2 0.57 0.08 -1.12 - 1.7 -0.18 - -2.05 -2.47 1.68 -0.2 0.59
Zm00001d043925 (GRMZM2G327999)
- - - - -0.69 -2.75 - -0.47 - - 2.89 -2.31 - 2.69 -5.49 2.06 - - 0.95 0.38 -0.78 - - - - - - -0.43 3.16 - -0.88 - -2.36 - -4.64 -1.35 1.36
- - - - - -0.98 - - - - - -3.61 - - - -3.6 - - -1.49 2.32 - 4.48 - - - - - 0.28 - - -0.36 - 2.16 -0.2 -0.01 -1.26 -
Zm00001d045702 (GRMZM2G164248)
- - - - -0.42 1.36 - - - - - -5.36 - - - -0.09 1.3 - - - -0.45 4.6 - - 0.64 - - -0.34 - - - - 1.02 -0.22 - - -
Zm00001d048974 (GRMZM2G020288)
-7.26 - -2.85 0.78 0.44 -1.34 -6.03 - - - 0.49 -3.91 - - - 0.55 0.83 -3.37 -0.9 -8.69 -0.37 2.38 0.68 -5.26 -1.6 - -3.74 -3.72 -0.71 3.55 1.03 - -2.77 -4.67 1.56 -1.56 1.04
- - -3.06 - 1.86 -1.41 - - - - -1.47 -0.71 - 1.33 -1.84 2.71 -2.85 - 3.08 -5.24 -0.39 1.12 - - - -1.26 - -0.36 - - -1.08 - -1.61 - 1.07 -1.14 2.69
- - - - 2.23 - 0.26 - - - 2.99 0.79 - - - 2.59 1.06 - 3.06 - -0.76 - - - 1.45 - - - - - - - - - - - 0.74
Zm00001d049434 (GRMZM2G155506)
- - - - 4.42 - - - - - - 0.45 - - - -0.65 - - - 3.76 - - - - - - - - - - - - - - - - -
- - -1.72 2.09 -2.63 -0.95 -1.38 -3.29 -1.69 -1.52 - -0.92 -0.81 - -1.6 -0.7 -1.8 0.56 -3.91 - - 1.21 -0.22 -3.15 -0.59 - -0.05 0.81 - 3.48 2.38 - -0.16 1.03 -0.83 -2.49 -
- - 0.81 -0.58 0.8 -2.25 -1.2 -2.38 - - -2.07 -1.06 - 1.69 -3.24 2.09 0.75 0.01 0.11 -2.88 0.94 - - - -1.3 2.11 1.98 2.4 - - -2.59 - -0.14 -4.18 0.28 -1.41 0.24
-1.03 0.4 -0.21 - -0.57 - - -2.06 -0.61 0.21 -0.38 -4.67 1.49 - -3.07 0.01 -1.37 - -2.27 -0.32 -0.73 4.4 -0.46 -0.8 - - - -1.85 - - -2.43 - -2.05 -0.03 -3.94 -0.6 -
- - - -1.72 -1.35 0.4 -2.44 -2.52 - - -1.24 -0.4 - -2.74 - 0.52 -5.76 -1.29 0.41 -5.25 -1.8 -0.71 - -6.99 -3.43 -4.23 -1.5 2.26 -0.2 3.98 -0.64 -1.05 1.33 0.93 0.44 -1.9 -3.49
Zm00001d051731 (GRMZM2G454184)
- - 4.93 - 1.85 - - - - - - 1.17 - - - -0.38 - - - - - - - - - - - - - - - - - - - - -
0.1 0.85 2.4 - -0.58 1.49 -1.06 -0.64 - - - -0.79 - - -1.91 1.46 - 1.14 -0.23 0.13 - - - -0.5 - - 1.67 3.05 - - - - 0.02 -2.01 -2.42 1.52 -
Zm00001d052934 (GRMZM2G001911)
- - -0.64 - -0.27 -1.88 -1.63 -0.35 - - - -0.09 - 1.27 0.21 1.19 1.08 -0.2 0.53 -1.7 -0.22 - - -0.8 - 1.05 - 0.99 - 3.68 1.62 - -2.16 -1.88 - -0.4 -
- - - - 0.88 - - - - - 2.68 0.97 - - - 2.54 2.86 - 0.4 2.7 - - - - 0.72 - - - - - - - - - 1.73 -0.1 -
- - - - 1.36 -2.58 - - - - 4.3 -2.41 - - - 2.74 - - 0.66 - -1.94 - - - -2.0 - - - - - - - -0.76 - -4.57 - 2.31
- - - -2.57 0.11 -0.91 -4.23 -4.28 - - -0.34 -1.04 - 2.22 -8.49 1.45 -5.26 -6.21 -0.6 -3.53 0.25 -5.71 - - -5.44 -1.63 - 2.09 - 3.9 0.03 -2.75 -1.15 -4.38 1.64 -2.93 -4.49
Zm00001d053809 (GRMZM2G339018)
- - 2.77 - 1.55 - - - - - - - - - 1.47 4.32 - - 0.05 - - - - - - - - - - - - - 0.45 - - 1.04 -
- - - 2.32 0.42 1.32 - 0.01 - - -1.02 -1.45 - -3.03 -10.08 0.63 2.62 - -6.6 -4.51 -3.54 -3.94 0.92 -6.02 -8.16 -1.06 -7.5 0.27 - -1.3 0.8 - -2.44 - 2.43 -0.31 2.63

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.