Heatmap: Cluster_138 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Root (elongation zone)
Root (meristematic zone)
Root (stele)
Root (tip)
Root
Leaf (3rd leaf of seedling)
Leaf (3rd leaf)
Leaf (apex)
Leaf (bundle sheath)
Leaf (mesophyll)
Leaf (Seedling)
Leaf
Internode
Stalks
Shoot
Shoot (apex)
Tassels (primordia)
Tassels
Anther
Pollen
Ear (immature)
Ear (inflorescence)
Ear (leaf)
Ear (primordia)
Ear
Silks
Kernels (germinating)
Kernels
Maternal transfer zone
Nucellus
Embryo
Endosperm (transfer layer)
Endosperm
Seeds
Coleoptyle (5 day)
Seedling
Whole Plant
Zm00001d000094 (GRMZM5G825902)
- - 1.58 1.65 1.06 -1.0 -2.81 -5.76 -4.2 -5.02 -0.0 -1.49 - 0.9 -1.72 1.19 -5.46 -4.81 0.74 -0.75 - - -4.16 - -0.89 - 2.11 -5.84 - 2.83 0.01 - 0.15 - -5.01 -6.49 2.52
Zm00001d003226 (GRMZM2G021560)
-1.21 -0.94 0.82 -2.72 0.9 0.34 1.88 -2.45 -0.32 0.58 0.57 0.53 -1.99 0.13 0.02 -0.12 -0.28 0.35 -0.17 -7.18 -1.58 -0.43 1.35 -0.24 0.02 0.4 0.75 -0.5 - -0.2 -1.74 - -1.26 -0.45 1.08 0.1 -0.1
Zm00001d003774 (GRMZM2G007546)
-1.82 -1.06 1.75 0.65 2.22 -4.01 -2.78 -0.63 -0.5 -0.35 -0.39 0.16 0.23 -0.07 -0.44 1.43 0.53 0.31 -0.49 -4.23 -0.52 -0.5 0.5 -0.14 -0.88 1.06 -0.53 -0.9 -2.42 0.28 -1.69 -4.96 -1.42 -0.13 0.32 -0.14 -0.61
Zm00001d004018 (GRMZM2G071219)
- - - - 1.71 - - -1.3 - - -3.57 0.54 - - - 0.8 -5.27 -5.72 -1.04 - 0.36 2.32 3.9 - -3.18 - - - - - 2.13 - -0.57 -3.78 - -3.9 1.6
- 2.33 - - -1.91 - - - - - 3.42 - - - - 4.19 - - - 0.6 - - - - - - - - - - - - -0.43 - -1.15 - -
-4.33 -5.46 - - 0.33 -2.14 -2.22 -1.3 -5.39 -3.41 - -2.93 -2.62 - -0.97 -0.14 -1.15 -0.39 -2.22 3.28 3.68 0.63 -0.76 -0.41 -2.61 - -4.19 1.24 - -2.55 0.18 0.09 -1.25 -2.63 -3.47 -1.71 -2.02
- - - - 1.94 -2.28 -3.0 1.94 - - -0.97 -2.0 - 1.99 -3.1 2.33 -0.76 - 0.33 -4.71 -0.63 -0.36 - - - 0.64 - -1.77 - - - - 0.81 -1.21 3.48 -3.26 -1.01
Zm00001d008855 (GRMZM2G056912)
-4.74 -6.22 -1.16 2.55 -0.74 1.06 1.05 0.34 - -5.64 -0.1 -0.03 - -2.93 -5.53 1.34 2.33 -3.51 1.66 -6.93 -0.34 - - -5.77 0.67 1.47 -0.99 -1.11 - 0.13 -0.86 - -1.77 -4.06 -0.26 0.25 0.65
Zm00001d009267 (GRMZM2G167521)
- - - - 3.96 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 4.42 -
Zm00001d009287 (GRMZM2G344039)
- - -1.2 - 1.24 -3.45 -3.81 - - - - -4.82 - -0.29 - 0.92 - - -3.12 -2.68 -3.82 - 2.27 - -4.68 - -1.15 0.86 - - - - -0.63 -3.68 -1.52 -5.66 4.51
Zm00001d011643 (GRMZM2G316907)
-1.82 0.39 -0.64 1.55 1.05 -2.07 -2.83 0.25 -0.9 -0.66 -1.6 -0.98 -0.1 1.63 -0.84 0.06 0.89 0.21 -0.67 -7.04 -0.29 1.13 -3.69 1.55 -0.15 -0.14 0.28 -0.96 - 0.52 -0.16 -2.69 -0.9 -0.38 1.03 -0.01 -0.83
-2.76 - 1.52 3.86 1.23 - - - - - 0.17 -1.74 - - -2.89 -1.48 - - -3.66 -0.03 - - 3.6 - -0.68 - - - - - - - -0.85 - - -0.73 -2.08
Zm00001d012138 (GRMZM5G817436)
-6.4 -4.23 1.49 - 2.48 -2.88 -2.15 - -4.11 - - -1.08 - -1.64 -0.3 1.65 - -2.4 -2.91 -6.63 -5.39 - 0.69 - -3.8 1.03 1.91 -1.43 3.69 - -2.38 -0.48 -3.08 -2.37 -3.78 -1.68 -0.59
- - -0.71 3.61 1.66 - - - - - - -0.55 - 1.38 - 1.88 - - 0.85 - -1.05 - - - -1.16 - - 2.87 - - -1.01 - 1.21 - -3.8 -0.55 -1.13
Zm00001d014629 (GRMZM2G307400)
- - - - 3.83 - - - - - - -1.43 - - 0.7 -2.13 - - - 0.88 - - - - - - 2.49 3.72 - - - - - - - - -
Zm00001d017658 (GRMZM2G428233)
-3.27 -1.02 -1.33 -1.13 1.73 1.21 0.96 -0.13 0.37 0.58 2.82 0.64 - -2.84 -0.71 -0.3 0.28 -2.05 0.56 -4.9 -1.59 - -0.13 -5.8 -0.62 -0.05 0.1 -2.21 - -2.24 -1.43 - -2.33 -1.96 -0.8 1.41 1.43
Zm00001d017668 (GRMZM2G058930)
- - - - 2.91 - - - - - 2.74 -1.5 - - - 2.98 - - - -0.44 - - - - 0.84 - - -0.26 - - - - -1.1 - -2.72 3.32 -0.9
Zm00001d018237 (GRMZM5G843892)
-2.16 -1.65 3.3 - 3.05 - - - -1.53 -2.69 - -2.53 0.35 -0.25 2.23 -1.76 - -1.39 2.47 - - - - - - - 1.03 - - - -2.49 - -3.65 - -4.31 -1.87 1.02
2.38 -2.24 2.24 - 4.28 - - - - - -0.83 -3.61 - - 1.05 -5.01 - - - - - - - - - - -0.64 -2.88 - - - - - -2.39 - -0.83 1.64
Zm00001d018320 (GRMZM5G848185)
2.6 -0.04 2.13 - 4.15 -4.61 - - -2.04 - -0.71 -3.97 - - 1.1 -3.8 - -3.22 -2.07 -4.66 - - - - - - -1.84 -3.29 - - - - -2.43 -2.81 -1.72 -0.27 1.26
Zm00001d019327 (GRMZM2G147560)
-5.51 -5.23 -3.35 3.31 2.73 -2.51 -0.04 -1.53 -1.98 -3.15 -4.07 -2.3 -0.28 -1.73 -2.8 -1.36 -2.27 -3.0 -5.55 -7.21 -3.53 -4.9 -0.83 -4.06 -2.43 0.29 2.28 -0.06 - -4.55 2.13 -3.78 -0.52 -0.77 -2.03 -0.4 0.49
- - - - 1.38 -1.27 -3.36 - - - -0.4 -0.42 - - 0.96 1.76 - -4.2 1.13 -2.66 - - - - -1.17 4.32 - 0.88 - - 0.58 - -0.7 - -4.54 -3.16 -2.94
Zm00001d020177 (GRMZM2G027041)
- - 0.06 - 4.61 - - - - - - -5.43 - - -3.09 -0.8 - -0.02 - 1.14 - - - - - - - - - - - - - - - 0.3 2.68
Zm00001d020183 (GRMZM5G898887)
-2.13 1.08 -1.02 2.42 1.16 -2.64 -4.24 -0.52 -2.21 -2.63 -1.41 -1.99 0.04 0.66 -2.85 -0.2 0.89 -0.33 0.23 -2.51 0.57 0.47 -3.34 0.69 -0.29 0.36 -0.2 0.28 - 1.91 0.73 - -1.51 -0.22 -0.21 -0.86 -2.08
Zm00001d020383 (GRMZM2G136032)
-2.25 0.9 0.03 -2.62 3.51 0.39 1.75 1.25 -0.18 0.64 0.76 0.56 - - -1.8 -0.49 - -1.5 -9.54 -7.56 - - 0.24 - -4.98 - -3.93 - - - - - - -7.55 -7.3 0.08 2.57
Zm00001d020503 (GRMZM2G056851)
- - - - 4.93 - - - - - - -5.55 - - - -6.84 - - - -4.43 - - - - - - - - - - - - - - - 1.88 1.42
Zm00001d020504 (GRMZM2G359142)
- - - - 3.61 - - - - - - - - - - -6.68 - - - -0.75 - - - - - 0.89 - - 4.17 - - - - - - 1.74 -0.08
- - -1.9 4.41 3.32 -2.1 - - -4.16 -6.31 -1.34 -1.67 - -5.49 -4.84 -3.44 - - -4.53 -5.08 -6.85 - -0.88 - -6.96 -0.51 -0.6 -4.13 - - - - -6.55 -7.96 - 0.49 -0.25
- - 0.92 - 4.32 - - - - - - -2.52 - -0.76 -5.69 -4.74 - - - - - - - - - - 2.09 - - - - - - - - 2.92 1.3
Zm00001d024969 (GRMZM2G084054)
- - - 2.78 4.4 - -4.57 - - - - - - -1.52 - -6.66 - - - - - - 1.51 - - - - -4.1 - - - - - - -5.41 1.97 0.8
- - - - 4.91 - - - - - - -2.77 - - - 2.76 - - - - - - - - - - - - - - - - - - - - -
Zm00001d025385 (GRMZM2G398876)
-7.5 -4.85 0.6 0.91 0.22 0.32 0.77 -1.1 - - 0.2 -0.67 - 0.45 - 1.61 2.2 -4.34 1.11 -6.23 0.36 - - -5.43 -0.22 1.16 1.94 0.18 - 1.25 0.06 - -2.25 -4.78 -5.9 -0.04 0.96
- - - 1.55 2.61 1.45 -0.35 -4.71 - -2.3 0.06 -4.16 - - -2.38 2.79 1.72 -3.09 -2.49 -5.59 2.74 - - -3.7 -4.92 -2.67 - -4.25 - -1.17 -1.08 - -6.82 -5.66 -4.03 -0.07 1.75
- - - - 4.97 - - - - - - - - - - 2.5 - - - - - - - - - - - - - - - - - - - - -
Zm00001d028419 (GRMZM2G321033)
2.8 -1.36 -1.85 2.72 2.78 -2.29 -1.79 -3.11 -1.18 -1.85 1.52 0.9 - -1.82 -0.73 -0.08 - -2.85 -3.24 -7.8 -4.51 - 1.48 -5.55 -2.7 -2.25 -1.06 -1.49 - -2.15 -3.03 - -4.11 -4.26 0.3 -0.12 0.1
Zm00001d028445 (GRMZM2G097788)
- - 1.77 0.52 4.44 -4.51 -3.58 -2.32 - - - -4.39 -3.05 - -0.17 2.78 - -4.8 - -6.5 - - - - -4.52 - -2.83 -4.79 - - - - -6.39 -5.55 -4.2 -1.47 0.6
- - - - - - - - - - - 2.18 - - - 4.67 - - - - - - - - - - - - - - - - - - - 2.81 -
-5.94 - 1.66 - 0.3 -4.43 - -0.01 - - -0.72 -1.01 - 2.15 -5.13 2.13 -4.8 -4.51 0.13 -3.32 0.9 - - - -1.49 0.36 3.21 1.71 - - 0.71 - -1.3 -6.32 - -3.52 1.15
- -4.85 -4.05 3.4 -0.0 -1.74 -1.33 -3.05 -1.98 -1.93 -1.05 -2.98 - -2.92 -2.18 -1.07 1.28 -4.24 0.11 -3.35 -2.21 1.56 - -1.17 -6.24 -0.19 - -2.5 2.49 2.23 -3.75 - -1.61 -4.79 1.32 -1.09 -1.02
- - -0.24 - 4.6 -0.51 - - - - 0.56 -1.72 - -1.49 2.0 0.81 - - - - -3.87 - - - -0.85 - - - - - - - - -3.04 - 0.85 -0.28
Zm00001d032210 (GRMZM5G842990)
-0.85 - - - 3.56 1.63 - - - - 2.11 1.31 1.59 - -1.31 0.91 - -0.36 -1.31 -3.79 - 0.22 - 1.19 -1.5 - - -4.39 - - 1.33 - 0.51 - -2.07 -2.29 -
-0.89 0.31 0.34 0.75 1.31 - - -0.42 - - 0.26 -4.08 - -0.54 -1.36 0.9 -1.13 0.85 2.06 -4.72 -0.19 -0.35 0.7 -1.59 -1.42 - - 0.57 3.28 - -0.97 - -1.11 0.51 - -1.44 -1.37
- - - - 2.56 -1.38 - - -1.43 - -1.27 -0.83 - 3.24 -5.71 2.33 -2.99 0.55 0.4 -3.93 2.06 0.08 - -2.74 0.25 0.42 -1.11 0.3 - - - - 0.06 - -4.76 -2.36 0.11
Zm00001d037121 (GRMZM2G091724)
- - - - 2.63 - - - - - - - - - - 3.51 4.16 - - - - - - - - - - - - - - - - - - 0.66 -
Zm00001d037628 (GRMZM2G341155)
- - -1.94 - 3.45 -1.97 -1.79 - - -1.68 -1.29 0.17 - - 0.37 0.62 - 2.66 -0.53 -0.91 -1.57 - - -1.4 1.48 - - -0.37 - - -0.81 - -0.79 -0.84 1.06 1.37 1.27
Zm00001d038759 (GRMZM2G401501)
- - - - 0.89 -5.18 - - - - -0.88 -4.62 - - -5.44 -4.26 - 2.06 -5.48 4.55 -3.76 -1.21 - - - - - -3.98 1.75 1.51 - - - - -5.37 - -
Zm00001d039742 (GRMZM2G003186)
- - - - 2.25 2.93 - -0.69 - - 1.03 1.44 - - - -0.29 -0.81 - 1.08 - -1.74 - - - - - - 2.9 - 2.71 -0.2 - - -1.9 -2.57 -2.67 -
-6.67 - - 2.2 2.41 - -6.35 -2.98 -5.48 - -0.85 -1.9 - - -0.27 -9.59 - -5.09 -3.76 - -7.5 - 3.7 - -6.4 - 2.98 -3.63 - -2.65 -0.12 - - -1.79 - -1.7 1.31
- - - 4.14 2.8 - - - - - - -0.9 - - -3.25 -7.91 - -3.16 -0.29 - -3.21 - -0.35 -3.74 - - -2.23 1.4 - - -3.91 - 1.68 -0.83 - -1.81 1.55
Zm00001d041574 (GRMZM2G332280)
-3.93 -2.97 -4.51 3.58 2.71 - - -3.13 - - - -2.47 - - -3.44 -5.96 -4.93 -1.55 -0.74 -5.11 -5.56 -3.01 -2.11 -5.51 -3.7 - -0.99 2.03 2.62 -0.35 - - 0.73 -1.43 -5.56 -2.78 1.41
Zm00001d042983 (GRMZM2G440016)
- - - - 2.7 - - - - - - 0.52 - 3.68 - 0.88 - - - -0.17 - - - - - 1.88 - 1.26 - - - - - - - -0.99 2.79
Zm00001d043571 (GRMZM2G059801)
-6.4 -3.75 -2.39 -1.75 -1.21 3.2 -0.36 1.79 -1.84 -2.07 -0.38 0.83 -2.86 0.68 -1.65 0.4 -1.64 -0.78 -1.28 -1.81 -0.12 -0.14 1.01 -0.94 1.21 -5.33 -4.22 -2.55 -0.85 -1.89 -1.23 -0.23 -1.68 -0.55 -2.12 0.55 1.49
2.52 2.7 - - 3.95 2.22 - - - - - 1.48 - - - 0.22 - - -0.41 - - - - - - - - - - - - - - - - - -
Zm00001d045348 (GRMZM2G156044)
- - - - 2.44 - - - - - - 0.89 - - - 2.32 - - 3.42 - - - - - - - - -0.06 - - - - 3.26 - 1.81 - -
- - - - - - - - - - - - - - - 5.21 - - - - - - - - - - - - - - - - - - - - -
- - - 4.5 3.3 -0.95 1.77 - - - - -2.64 - - - -1.09 - - - - - - - - - - - - - - - - - - - - -
Zm00001d048255 (GRMZM2G128740)
-1.83 -0.61 - - 4.22 - - - - - - -2.05 0.24 - -2.97 2.61 -1.79 0.55 -0.1 - -0.97 - - 1.7 -1.0 - - -1.85 - - -1.61 - -1.67 -3.45 0.43 -2.7 -1.6
-3.42 - -2.75 - 3.63 -4.12 - - - - -0.55 -1.52 - 2.83 -3.44 0.01 -1.74 -1.55 -1.47 -3.04 -1.28 - 1.94 -1.29 -3.15 -1.89 -1.02 2.11 - 0.56 -1.79 - -3.71 -3.23 -1.16 -0.39 -0.07
- - - - 4.3 -3.71 0.0 - -3.29 - -0.74 -2.51 - - -2.43 -3.42 -2.1 -3.15 -3.5 -4.47 - - - - - - -2.43 -5.51 3.19 -1.43 - - -3.92 -2.29 -5.62 2.17 -3.25
Zm00001d049031 (GRMZM2G411177)
-1.61 -4.87 1.35 3.47 3.69 -5.23 -3.63 - -4.32 -3.74 -3.23 -4.17 -5.02 0.74 -0.9 0.5 - -0.1 -0.04 -5.08 -7.61 - - -6.56 -4.25 -5.45 -5.04 -2.69 0.16 - - -1.64 -3.57 -2.3 0.3 -0.73 -1.9
- - - - 2.71 - - - - - - -2.21 - - - -0.02 - - 4.04 - 0.76 - - - 2.67 - - -1.17 - - - - 1.83 -0.78 - -2.77 -
- - - - 3.36 0.58 0.19 - - - 0.16 0.67 - - - 0.63 - - 1.7 - - - - - - - - 3.27 - - 1.63 - 1.45 - 0.01 -4.65 -
Zm00001d053436 (GRMZM2G170446)
- - - - 0.96 - - - - - - -0.5 - - - 0.16 - - - 4.61 - - - - - - - 1.09 - - - - 1.11 1.84 -0.47 -2.19 -
- - - - 5.13 - - - - - - 1.06 - - - - - - - - - - - - - - - - - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.