Heatmap: Cluster_277 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Root (elongation zone)
Root (meristematic zone)
Root (stele)
Root (tip)
Root
Leaf (3rd leaf of seedling)
Leaf (3rd leaf)
Leaf (apex)
Leaf (bundle sheath)
Leaf (mesophyll)
Leaf (Seedling)
Leaf
Internode
Stalks
Shoot
Shoot (apex)
Tassels (primordia)
Tassels
Anther
Pollen
Ear (immature)
Ear (inflorescence)
Ear (leaf)
Ear (primordia)
Ear
Silks
Kernels (germinating)
Kernels
Maternal transfer zone
Nucellus
Embryo
Endosperm (transfer layer)
Endosperm
Seeds
Coleoptyle (5 day)
Seedling
Whole Plant
Zm00001d002179 (GRMZM2G039097)
- - -0.95 - 1.97 -0.39 0.97 - -0.85 -0.87 - 0.7 - -1.15 -1.44 0.81 -1.26 0.77 1.55 0.4 -0.21 - 1.51 -1.62 0.32 - -1.1 2.15 - - - - -2.16 -1.08 1.86 0.09 1.36
Zm00001d002231 (GRMZM5G816240)
- - - 1.08 1.3 -0.29 2.09 -2.46 - - - 0.41 - -1.05 - 0.77 - - 2.47 1.38 -0.02 - - - - - - 1.72 - 2.09 -2.51 - 0.36 - 0.72 -1.25 1.78
Zm00001d002451 (GRMZM2G149556)
-1.28 -4.93 -3.06 -1.26 -0.4 -0.74 -0.63 -0.42 -1.59 -1.42 -3.16 -1.12 0.18 1.33 -1.06 0.94 0.34 -0.64 -0.35 -10.39 1.44 1.33 -4.13 -0.22 -0.34 -1.16 -2.54 1.49 1.0 2.03 -1.61 1.89 -0.99 -0.27 -3.64 -0.32 -0.83
-2.88 - -1.52 -0.02 -0.26 -0.83 -2.4 -1.94 -0.33 -1.17 - 0.3 0.27 2.02 1.03 1.06 -3.39 0.58 1.11 - -0.03 -0.45 - -3.82 0.98 -2.68 -5.21 2.31 - -1.07 -1.66 - -2.55 -2.76 1.49 1.64 1.11
Zm00001d002803 (GRMZM2G465188)
0.47 -5.21 -1.91 - -2.41 - -3.69 - -1.46 0.63 - -3.51 - - -1.37 -7.77 - 2.41 -8.01 -0.89 - - - - -4.07 - - 1.32 - 4.19 -5.58 2.39 -3.04 -4.49 -2.51 -2.08 -2.89
Zm00001d004581 (GRMZM2G100776)
- - -3.59 - 1.32 - -2.2 - -2.11 -1.87 0.98 -0.51 - - -0.07 -4.72 - - -6.85 -6.44 - - - - -5.1 - - 4.33 - - - - -3.48 3.15 - -3.2 -0.21
Zm00001d007174 (GRMZM2G473709)
-0.45 -0.27 -0.64 0.84 0.23 -1.35 -2.06 -0.07 -2.7 -3.12 -1.41 -1.37 -0.11 0.72 -1.74 0.85 0.54 -0.42 1.27 -0.06 0.48 0.02 -1.14 -1.74 -0.44 0.68 -1.42 1.63 0.72 0.82 -0.05 0.76 0.61 -0.24 -0.81 -0.76 -1.35
Zm00001d008509 (GRMZM2G569903)
- - - -0.88 0.81 -0.38 0.5 -0.4 - - -2.17 -1.17 - 2.96 -7.13 1.28 -2.73 -2.32 -5.5 - -5.06 -4.9 - - -5.63 -2.75 - 2.93 0.65 - -1.3 - -3.76 - 3.35 -2.38 -2.44
Zm00001d009128 (GRMZM2G121278)
- - 1.22 - -2.82 - - - - - - -3.93 - - - 0.39 - - 0.62 1.18 -1.02 - - 0.43 -0.79 - - 4.19 - - - - 2.74 0.98 - - -
Zm00001d009130 (GRMZM2G328205)
- - - - -2.28 - - - 2.96 2.39 - 0.72 - - 2.67 -2.15 - - -2.01 -1.15 -0.36 - - - - - - 2.91 - - - - - 2.22 - 0.89 -
Zm00001d009438 (GRMZM2G054689)
- - -6.28 -1.84 -0.22 0.51 0.68 -1.48 -2.98 -5.95 - -0.2 - -3.2 -2.0 1.0 -2.72 -5.47 -0.32 0.33 -1.37 - 1.88 -1.31 -1.37 -2.96 - 2.68 - 0.07 3.76 - -4.12 -4.94 -7.65 -0.63 -2.42
- - - - 1.62 -0.63 -6.07 - - - -2.03 -1.65 - - -2.52 0.83 -0.72 -1.04 0.26 -4.99 -5.9 - - -4.26 -2.96 -2.34 -3.87 2.86 - -2.33 1.13 - 0.67 -3.98 3.49 -1.79 2.36
- - - - - - - - - - - 0.38 - - - - - - - - - - - - - - - 5.16 - - - - - - - - -
Zm00001d014485 (GRMZM2G026396)
2.14 1.02 - 3.33 0.92 - -0.39 2.39 -0.11 - - -1.64 - - - -2.59 - - - - - - - - - - - 1.61 - - 1.77 - 0.32 1.58 - -5.5 -1.18
- - - - 0.31 -2.17 - - - - -2.64 -3.38 - - - 1.35 2.39 - 0.91 - - 1.78 - -3.92 -1.43 3.05 -3.23 3.23 - - -0.72 - -0.07 -0.93 -2.86 0.78 -4.04
Zm00001d015071 (GRMZM2G180782)
- - - - 0.12 - - - - - - - - - - -1.68 3.25 - - - - - - - - - - 4.04 - - - - - 2.67 - 1.7 -
Zm00001d015073 (GRMZM2G013538)
- - - - -4.52 -3.04 - - - - - -5.42 - - - -3.13 -1.73 - -3.56 - 0.93 1.74 - - - - - 4.54 - - -0.49 - -0.67 2.63 - -1.85 -
- - -4.1 - -0.85 -0.29 -0.67 -0.08 - - -1.34 0.38 - -1.23 -4.44 2.12 -0.12 - 2.93 -0.74 -1.03 - 0.84 -3.81 - -0.6 - 3.71 - - -0.41 -1.5 -2.95 -5.46 -4.35 -1.19 -1.1
- - - 3.6 -0.14 0.01 1.09 0.54 - - - -1.0 - 1.16 - 0.47 - - -1.52 - - -0.82 0.49 - -1.75 - - 2.63 - - 1.82 - -0.6 - 0.86 -1.04 -
Zm00001d017477 (GRMZM5G842961)
-0.66 -2.07 1.15 -0.47 0.43 -2.56 -3.85 -1.12 -5.43 -4.41 - -2.36 -5.55 2.13 -2.26 2.42 -1.82 -1.23 -4.82 -7.93 -2.1 -2.96 -2.15 -3.23 -1.13 - -1.25 3.51 -0.82 1.42 0.16 - -1.79 0.36 -1.83 -0.65 -1.42
Zm00001d018191 (GRMZM2G021369)
-4.25 -7.11 -5.94 -4.89 -0.53 -1.56 -6.09 0.92 -5.77 -2.69 -5.27 -2.61 -3.14 3.78 -1.82 1.22 -3.53 -4.36 -0.48 -9.3 -3.29 -5.14 -2.39 -2.74 -1.77 -1.03 -3.67 2.83 1.3 0.42 1.06 -1.78 -2.43 -0.66 -2.69 -1.09 -2.25
Zm00001d018252 (GRMZM2G149930)
- - - - -5.59 1.23 -1.56 - - - -1.42 -1.01 - -2.24 - -4.75 -1.23 -0.81 0.03 - - - 2.23 - -1.22 - - 2.84 - 3.87 - 0.89 0.22 -0.98 - -0.45 -
- - - - 1.38 -3.41 - - - - - -4.12 - - -4.7 0.14 - -5.76 - - - - - - -5.6 - - 3.13 - 3.71 1.99 - -1.06 - 2.72 -2.39 -
Zm00001d018914 (GRMZM2G062911)
- - - - 1.28 -3.23 - - - - - -3.3 - - - 0.14 - - - -7.43 - - - - - - - 0.39 - 4.22 1.54 - -3.5 - 3.27 -2.13 -1.38
- - - - 1.14 0.05 - - - - - -4.49 - - - -0.4 - - - - - 3.39 - - -0.91 - - 1.0 - - 2.48 - - - 3.85 -6.99 -
- - -0.9 - 0.21 0.54 - - - - - -0.81 - - - -0.6 - - 0.43 - - 3.61 - - -2.71 - - 1.85 3.57 - -1.87 - -1.43 -1.98 1.32 - -
- - - - - - - - - - - -7.33 - - - 0.06 1.68 1.1 - - 2.77 - - - 0.41 - - 2.66 - 3.64 - - 1.12 - -1.12 - 0.01
- - - - - - - - - - - -7.09 - - - -5.92 -3.74 - - -6.1 0.48 - - - -2.66 2.7 - 2.51 - 4.51 - - -1.92 -5.72 - - -
Zm00001d024900 (GRMZM2G018099)
- - - - -7.91 1.67 - -3.48 - - - 2.24 - -2.25 -3.76 -0.77 -3.03 -0.74 -1.3 -1.51 - - - - -1.03 0.15 -3.03 3.64 - - - - -6.05 - -0.08 2.18 2.8
- - - - 0.14 1.0 0.91 - - - - 0.85 - - -2.58 2.08 - - -2.84 - 2.08 - - - -0.08 1.98 - 2.72 - 2.08 - - -1.95 0.29 -0.88 1.12 0.61
Zm00001d027988 (GRMZM2G006676)
-0.26 -2.99 -5.73 -0.17 -0.49 -3.64 -5.7 -1.0 -3.75 -2.76 -4.78 -1.69 -2.0 2.27 -1.99 0.95 -1.52 -1.77 -0.47 -4.35 1.33 -0.51 -1.12 1.12 -0.61 -1.16 -3.08 2.42 1.8 0.35 1.91 1.01 -0.78 -1.76 -2.63 -1.89 -1.47
Zm00001d029913 (GRMZM2G176595)
-2.94 -7.05 -0.68 3.13 0.45 -1.42 -3.05 -2.88 -1.58 -1.27 -5.27 -2.02 -2.73 1.07 1.0 0.73 -10.49 0.69 -2.41 -7.49 -9.08 -6.11 -9.42 -9.6 -3.14 2.04 0.47 1.63 0.8 -5.2 -5.19 -1.6 -2.06 1.72 -0.56 -0.23 -0.24
Zm00001d030193 (GRMZM2G028389)
- - - - -2.05 0.15 -0.62 -0.61 - - - -1.04 - - - 0.8 -1.51 - 2.31 -4.43 - 3.06 - - 1.55 - - 2.76 - - 1.1 - -1.74 - 2.2 -2.59 0.62
-3.95 - -0.72 - 0.44 -2.42 - - -0.77 -3.93 -0.97 -0.61 - 2.0 -1.59 1.62 -2.6 -1.68 2.91 -4.69 -1.89 - - -3.5 - 1.66 - 1.37 - -0.92 -0.25 - -1.58 -3.61 -0.04 -0.13 2.95
- - -1.09 1.84 1.29 -0.69 0.24 - - - - -0.31 - -0.47 -0.65 0.86 2.76 - -1.12 -0.67 0.29 0.41 - - -1.91 - - -0.72 - 2.92 0.06 - -3.82 - 1.51 0.91 -
Zm00001d036320 (GRMZM2G119998)
- -3.56 -1.75 2.0 1.25 -1.28 - -1.12 - - -1.74 0.28 - 2.95 -2.17 0.49 -4.36 - 1.61 -6.81 -3.2 0.04 - -2.59 -0.97 1.34 - 1.02 - 0.93 -2.12 - -2.02 - 1.05 -0.69 1.97
- - - - 2.54 - - - - - 1.7 -0.13 - - - 0.55 - - - -1.22 - - - - - - - 4.27 - - - - 0.09 - -1.63 - 2.14
- - - - 0.52 - - - - - - -3.2 - - - 2.71 0.46 - -0.41 -1.66 2.43 - - 1.56 - -0.02 - 3.98 - - - - -1.8 -2.04 -1.98 -3.67 -0.87
Zm00001d039326 (GRMZM2G013010)
- - -2.91 - 0.45 -3.29 - - - - -2.33 -1.82 -2.95 -4.02 1.18 -0.26 -3.82 -3.32 -1.56 -1.63 -1.92 -1.74 - -2.89 -3.25 - -2.98 2.31 - 4.36 -4.48 -1.89 1.38 -4.56 -4.38 0.17 -1.8
- - - - -1.43 - - - - - - - - - - 1.21 - - 1.3 -2.97 1.91 - - - - 1.18 - 4.68 - - - - - - - - -
- - - -0.55 1.09 -1.1 - -2.5 - - 1.15 -0.13 - 1.11 - 0.14 - - 1.51 - -3.03 -0.98 - - -2.63 -0.45 -2.63 -1.14 - 3.83 -0.11 - -2.51 - 1.48 0.34 1.48
- - - - 1.24 -0.04 1.05 - - - - -1.81 - 0.58 - -1.06 -3.27 - 1.76 - - - - - - - - 2.9 2.78 0.25 1.47 - 0.16 - 2.69 - -
- -0.48 - - 2.15 - - - - - 1.6 -0.12 - - - 2.03 - - 3.47 -2.7 -2.1 - - - 1.57 - - 2.85 - - - - 1.15 - - - -
Zm00001d045137 (GRMZM2G428020)
-0.26 0.68 -5.72 0.16 1.16 -2.94 - -5.82 -0.12 -3.2 -4.14 -0.73 - 0.4 -1.63 -1.32 -3.69 0.24 1.11 -3.36 -2.85 -3.86 - -1.81 -3.36 -0.94 -2.47 1.46 0.11 3.51 -2.26 -1.74 -0.23 -0.93 1.82 0.4 -0.92
Zm00001d045454 (GRMZM2G147319)
2.18 0.98 1.43 - 0.22 -2.83 -7.04 - -4.29 -5.44 - -3.7 2.35 -0.42 -1.54 1.46 - 0.57 -1.17 - -2.35 -3.45 - -3.2 1.17 0.76 -0.98 2.24 0.19 - -4.94 - -2.41 1.71 -1.8 -0.35 -2.49
Zm00001d045456 (GRMZM2G010740)
- - - - -6.23 - - -3.63 - - - -4.62 1.72 2.43 -3.14 -0.45 -0.47 -0.43 -0.63 -6.86 -0.58 -0.32 - 2.11 1.61 - -4.81 3.44 -1.2 - -2.41 1.28 -0.56 0.57 -4.47 -2.47 -6.25
Zm00001d045653 (GRMZM2G004824)
-3.49 -1.04 -2.3 0.65 0.13 -2.51 - - - - - -1.04 - 2.41 -5.32 0.93 -1.69 - -1.44 -3.4 1.99 - - - -4.69 - -1.44 2.62 - 0.06 1.53 - 0.21 1.17 0.73 -1.95 2.35
Zm00001d047644 (GRMZM2G066734)
-4.81 - - - 1.15 -1.58 - -0.57 - - - -2.55 - 3.47 -4.71 2.22 - - - - -4.34 -1.9 -1.26 - -2.04 - - 4.01 - - - - -3.53 -2.72 - -2.93 -1.47
Zm00001d047647 (GRMZM2G164283)
- - - 3.63 1.53 -4.48 0.42 - -3.04 - - 0.43 - - -1.81 -7.35 - -2.02 - -5.6 - - 2.76 - - - - 3.43 - - - - -4.51 - - -0.6 -3.23
- - 1.3 - 0.32 -3.45 -6.25 - - - -0.09 -0.44 - 2.69 - 1.86 -6.01 - 0.09 -7.95 -0.46 - - -1.94 -2.77 -2.6 2.72 1.76 - 1.95 -0.42 - -1.98 -4.61 -1.8 -1.22 1.77
Zm00001d049996 (GRMZM2G142366)
- - - - - - - - - - - - - - 3.22 0.01 - - - - - - - - - - - 4.74 - - - - - - - - -
Zm00001d052358 (GRMZM2G451035)
- - - - 1.28 -1.98 - - - - - -2.26 - - -5.83 0.71 - -0.52 - -2.07 - - 4.73 - -1.03 -1.1 - 0.92 - - - - -0.56 - -1.51 -5.21 0.08

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.